Wall clock time and date at job start Tue Mar 31 2020 19:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47060 * 2 1 4 4 C 1.50701 * 109.46792 * 119.99560 * 2 1 3 5 5 N 1.31076 * 126.66020 * 300.17514 * 4 2 1 6 6 N 1.28843 * 107.98916 * 180.24243 * 5 4 2 7 7 N 1.28744 * 109.39898 * 359.75523 * 6 5 4 8 8 N 1.29026 * 108.80530 * 359.97438 * 7 6 5 9 9 C 1.46494 * 126.43677 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46856 * 90.02544 * 9 8 7 11 11 O 1.21277 * 120.00230 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00069 * 179.97438 * 10 9 8 13 13 C 1.47021 * 125.64912 * 0.04548 * 12 10 9 14 14 C 1.54318 * 107.27456 * 178.90621 * 13 12 10 15 15 C 1.55160 * 102.94042 * 337.80359 * 14 13 12 16 16 H 1.08997 * 111.03686 * 277.41167 * 15 14 13 17 17 C 1.53000 * 111.00233 * 153.57818 * 15 14 13 18 18 C 1.53001 * 109.47355 * 72.80644 * 17 15 14 19 19 N 1.46490 * 109.47264 * 179.97438 * 18 17 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 C 1.47418 * 125.65078 * 180.02562 * 12 10 9 29 29 H 1.08997 * 109.47296 * 300.00523 * 1 2 3 30 30 H 1.08999 * 109.47035 * 60.00391 * 1 2 3 31 31 H 1.09004 * 109.47044 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47296 * 239.99476 * 2 1 3 33 33 H 1.08994 * 109.47513 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47122 * 299.99496 * 3 2 1 35 35 H 1.09005 * 109.47615 * 59.99397 * 3 2 1 36 36 H 1.08999 * 109.47165 * 330.03085 * 9 8 7 37 37 H 1.08991 * 109.47489 * 210.02432 * 9 8 7 38 38 H 1.09000 * 109.88131 * 298.32144 * 13 12 10 39 39 H 1.09000 * 109.88408 * 59.33069 * 13 12 10 40 40 H 1.09007 * 110.72069 * 219.44700 * 14 13 12 41 41 H 1.08993 * 110.72794 * 96.16771 * 14 13 12 42 42 H 1.09000 * 109.46966 * 312.80330 * 17 15 14 43 43 H 1.09002 * 109.46807 * 192.80353 * 17 15 14 44 44 H 1.09003 * 109.46836 * 59.99354 * 18 17 15 45 45 H 1.08999 * 109.47071 * 300.00393 * 18 17 15 46 46 H 0.97000 * 120.00577 * 0.02562 * 19 18 17 47 47 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 48 48 H 1.09002 * 110.37063 * 85.32471 * 28 12 10 49 49 H 1.09003 * 110.46182 * 323.04821 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7948 -0.3800 2.4766 6 7 2.4013 -1.2266 3.2352 7 7 3.0153 -2.0915 2.5054 8 7 2.8088 -1.8092 1.2634 9 6 3.3280 -2.5427 0.1065 10 6 2.3494 -3.6195 -0.2859 11 8 1.3196 -3.7601 0.3389 12 7 2.6182 -4.4258 -1.3320 13 6 3.8230 -4.3659 -2.1726 14 6 3.7072 -5.4929 -3.2204 15 6 2.7133 -6.4829 -2.5574 16 1 3.2249 -7.1368 -1.8512 17 6 1.9658 -7.2992 -3.6136 18 6 2.9159 -8.3282 -4.2296 19 7 2.2000 -9.1102 -5.2405 20 6 2.8516 -10.0974 -5.9304 21 1 3.8931 -10.2998 -5.7290 22 6 2.1734 -10.8381 -6.8888 23 7 0.9041 -10.5912 -7.1346 24 14 3.0621 -12.1853 -7.8294 25 1 2.1233 -12.8216 -8.7881 26 1 4.2056 -11.5981 -8.5729 27 1 3.5639 -13.2068 -6.8754 28 6 1.7532 -5.5140 -1.8226 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1299 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 4.2845 -2.9974 0.3640 37 1 3.4654 -1.8551 -0.7279 38 1 3.8782 -3.3990 -2.6728 39 1 4.7111 -4.5169 -1.5589 40 1 4.6742 -5.9687 -3.3835 41 1 3.3022 -5.1090 -4.1566 42 1 1.5965 -6.6331 -4.3934 43 1 1.1256 -7.8139 -3.1475 44 1 3.2852 -8.9942 -3.4498 45 1 3.7562 -7.8135 -4.6957 46 1 1.2646 -8.9283 -5.4218 47 1 0.4426 -9.8918 -6.6459 48 1 1.0065 -5.1229 -2.5137 49 1 1.2683 -6.0209 -0.9883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272581954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:26 Heat of formation + Delta-G solvation = 86.175724 kcal Electronic energy + Delta-G solvation = -28772.486400 eV Core-core repulsion = 24772.469460 eV Total energy + Delta-G solvation = -4000.016940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.53771 -40.67773 -38.38197 -36.64351 -35.75679 -35.52372 -33.47544 -31.87609 -31.17686 -29.98638 -29.51182 -27.74093 -27.20515 -24.82636 -24.37385 -23.41552 -23.20452 -21.91149 -21.18710 -20.44981 -20.02836 -18.39254 -17.99976 -17.35927 -16.85890 -16.61016 -16.30052 -15.64186 -15.25095 -15.08450 -14.72191 -14.51098 -14.01478 -13.87456 -13.79345 -13.66718 -13.56294 -13.39602 -13.13429 -12.87480 -12.72205 -12.51925 -12.46275 -12.17951 -11.96849 -11.88194 -11.72091 -11.69213 -11.52167 -11.31731 -11.06960 -10.83089 -10.76430 -10.61102 -10.52264 -10.50238 -10.27631 -10.01930 -9.24393 -9.19427 -8.93572 -7.06702 -6.15842 -3.15988 0.80323 1.36779 1.84674 1.95308 2.37616 3.40228 3.47642 3.51218 3.58845 3.62210 3.68904 3.91756 4.13546 4.17589 4.30514 4.41143 4.50389 4.52949 4.64513 4.66564 4.79145 4.93794 5.03444 5.09205 5.10426 5.20639 5.29023 5.33327 5.34476 5.36420 5.38447 5.49285 5.53041 5.56828 5.60743 5.64751 5.69933 5.75683 5.78758 5.86873 6.01857 6.06490 6.16153 6.64391 6.68905 6.84334 7.40599 7.74727 8.29432 8.70448 9.17562 10.03863 10.18214 11.32713 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.028316 B = 0.001766 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.597534 B =15853.208219 C =16104.543895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.203 3.797 5 N -0.299 5.299 6 N -0.071 5.071 7 N -0.085 5.085 8 N -0.296 5.296 9 C 0.098 3.902 10 C 0.515 3.485 11 O -0.519 6.519 12 N -0.609 5.609 13 C 0.091 3.909 14 C -0.126 4.126 15 C -0.094 4.094 16 H 0.088 0.912 17 C -0.117 4.117 18 C 0.161 3.839 19 N -0.746 5.746 20 C -0.333 4.333 21 H 0.064 0.936 22 C -0.046 4.046 23 N -0.943 5.943 24 Si 1.081 2.919 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.295 1.295 28 C 0.110 3.890 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.018 0.982 45 H 0.020 0.980 46 H 0.367 0.633 47 H 0.255 0.745 48 H 0.075 0.925 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.581 24.627 11.501 27.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.075 4.075 5 N -0.147 5.147 6 N -0.065 5.065 7 N -0.071 5.071 8 N -0.097 5.097 9 C -0.029 4.029 10 C 0.300 3.700 11 O -0.394 6.394 12 N -0.344 5.344 13 C -0.032 4.032 14 C -0.164 4.164 15 C -0.113 4.113 16 H 0.106 0.894 17 C -0.155 4.155 18 C 0.033 3.967 19 N -0.392 5.392 20 C -0.464 4.464 21 H 0.082 0.918 22 C -0.244 4.244 23 N -0.589 5.589 24 Si 0.911 3.089 25 H -0.210 1.210 26 H -0.222 1.222 27 H -0.222 1.222 28 C -0.011 4.011 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.200 0.800 47 H 0.066 0.934 48 H 0.094 0.906 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.201 23.214 12.226 26.960 hybrid contribution 0.128 1.002 0.157 1.022 sum 6.329 24.216 12.384 27.925 Atomic orbital electron populations 1.21838 0.91598 1.03305 1.03548 1.19806 0.97995 0.96076 0.89382 1.21858 1.01208 0.93299 1.03856 1.26121 0.94581 0.88759 0.98067 1.74964 1.19637 1.21832 0.98284 1.78621 1.06631 0.98904 1.22335 1.78910 1.20258 1.20755 0.87131 1.47871 1.34885 1.20106 1.06841 1.21943 0.99096 0.95438 0.86375 1.19863 0.87330 0.82649 0.80206 1.90842 1.26341 1.70295 1.51967 1.48427 1.22640 1.33629 1.29691 1.22299 0.87232 1.00620 0.93046 1.22748 1.01352 0.94685 0.97624 1.22351 0.95780 0.95637 0.97579 0.89390 1.21693 0.99010 0.97952 0.96866 1.20548 0.93623 0.91353 0.91163 1.42375 1.10884 1.41280 1.44624 1.20022 0.96036 1.12303 1.18084 0.91780 1.25814 0.97197 1.02707 0.98650 1.70892 1.09597 1.34159 1.44215 0.83235 0.74346 0.75324 0.75981 1.20973 1.22240 1.22233 1.22450 0.93233 0.86699 0.98731 0.90948 0.90759 0.91906 0.89268 0.92355 0.90650 0.90838 0.83916 0.84350 0.90839 0.90775 0.89188 0.89794 0.91555 0.91518 0.96412 0.96193 0.80043 0.93420 0.90628 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.18 37.16 0.34 -0.61 16 2 C -0.01 -0.07 3.26 -91.77 -0.30 -0.36 16 3 C -0.14 -0.64 9.17 37.15 0.34 -0.30 16 4 C 0.20 2.00 6.64 -155.43 -1.03 0.97 16 5 N -0.30 -3.84 12.36 32.70 0.40 -3.43 16 6 N -0.07 -1.03 13.43 60.35 0.81 -0.22 16 7 N -0.09 -1.11 13.29 60.35 0.80 -0.31 16 8 N -0.30 -2.95 2.83 -59.45 -0.17 -3.12 16 9 C 0.10 0.57 5.76 -5.20 -0.03 0.54 16 10 C 0.51 4.84 7.92 -10.98 -0.09 4.76 16 11 O -0.52 -7.45 16.69 5.56 0.09 -7.35 16 12 N -0.61 -4.94 3.33 -170.51 -0.57 -5.50 16 13 C 0.09 0.46 6.49 -3.07 -0.02 0.45 16 14 C -0.13 -0.95 5.90 -24.90 -0.15 -1.09 16 15 C -0.09 -0.93 3.01 -88.46 -0.27 -1.20 16 16 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.12 -1.59 4.84 -26.73 -0.13 -1.72 16 18 C 0.16 2.97 6.16 -4.05 -0.02 2.94 16 19 N -0.75 -18.29 5.60 -59.91 -0.34 -18.62 16 20 C -0.33 -9.29 9.99 -15.06 -0.15 -9.44 16 21 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 22 C -0.05 -1.33 5.50 -17.43 -0.10 -1.42 16 23 N -0.94 -28.86 13.70 55.49 0.76 -28.10 16 24 Si 1.08 25.48 29.92 -169.99 -5.09 20.39 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.11 1.08 6.37 -2.52 -0.02 1.07 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.35 6.84 -51.93 -0.36 -0.01 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.14 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.14 0.23 7.12 -51.93 -0.37 -0.14 16 38 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 42 H 0.07 0.90 7.97 -51.93 -0.41 0.48 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.37 7.75 -51.93 -0.40 -0.04 16 46 H 0.37 9.17 6.50 -40.82 -0.27 8.90 16 47 H 0.25 7.64 6.77 -40.82 -0.28 7.36 16 48 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 49 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 LS Contribution 403.27 15.07 6.08 6.08 Total: -1.00 -38.08 403.27 -6.86 -44.94 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.03 Total: 0.69 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -1.62 Total: -5.43 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 1.71 Total: -59.31 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.09 Total: -7.35 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.09 Total: 20.39 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.08 -6.86 -44.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272581954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.115 kcal (2) G-P(sol) polarization free energy of solvation -38.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds