Wall clock time and date at job start Tue Mar 31 2020 19:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47060 * 2 1 4 4 C 1.50701 * 109.46792 * 119.99560 * 2 1 3 5 5 N 1.31076 * 126.66020 * 300.17514 * 4 2 1 6 6 N 1.28843 * 107.98916 * 180.24243 * 5 4 2 7 7 N 1.28744 * 109.39898 * 359.75523 * 6 5 4 8 8 N 1.29026 * 108.80530 * 359.97438 * 7 6 5 9 9 C 1.46494 * 126.43677 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46856 * 90.02544 * 9 8 7 11 11 O 1.21277 * 120.00230 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00069 * 179.97438 * 10 9 8 13 13 C 1.47021 * 125.64912 * 0.04548 * 12 10 9 14 14 C 1.54318 * 107.27456 * 178.90621 * 13 12 10 15 15 C 1.55160 * 102.94042 * 337.80359 * 14 13 12 16 16 H 1.08997 * 111.03686 * 277.41167 * 15 14 13 17 17 C 1.53000 * 111.00233 * 153.57818 * 15 14 13 18 18 C 1.53001 * 109.47355 * 72.80644 * 17 15 14 19 19 N 1.46490 * 109.47264 * 179.97438 * 18 17 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 C 1.47418 * 125.65078 * 180.02562 * 12 10 9 29 29 H 1.08997 * 109.47296 * 300.00523 * 1 2 3 30 30 H 1.08999 * 109.47035 * 60.00391 * 1 2 3 31 31 H 1.09004 * 109.47044 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47296 * 239.99476 * 2 1 3 33 33 H 1.08994 * 109.47513 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47122 * 299.99496 * 3 2 1 35 35 H 1.09005 * 109.47615 * 59.99397 * 3 2 1 36 36 H 1.08999 * 109.47165 * 330.03085 * 9 8 7 37 37 H 1.08991 * 109.47489 * 210.02432 * 9 8 7 38 38 H 1.09000 * 109.88131 * 298.32144 * 13 12 10 39 39 H 1.09000 * 109.88408 * 59.33069 * 13 12 10 40 40 H 1.09007 * 110.72069 * 219.44700 * 14 13 12 41 41 H 1.08993 * 110.72794 * 96.16771 * 14 13 12 42 42 H 1.09000 * 109.46966 * 312.80330 * 17 15 14 43 43 H 1.09002 * 109.46807 * 192.80353 * 17 15 14 44 44 H 1.09003 * 109.46836 * 59.99354 * 18 17 15 45 45 H 1.08999 * 109.47071 * 300.00393 * 18 17 15 46 46 H 0.97000 * 120.00577 * 0.02562 * 19 18 17 47 47 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 48 48 H 1.09002 * 110.37063 * 85.32471 * 28 12 10 49 49 H 1.09003 * 110.46182 * 323.04821 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7948 -0.3800 2.4766 6 7 2.4013 -1.2266 3.2352 7 7 3.0153 -2.0915 2.5054 8 7 2.8088 -1.8092 1.2634 9 6 3.3280 -2.5427 0.1065 10 6 2.3494 -3.6195 -0.2859 11 8 1.3196 -3.7601 0.3389 12 7 2.6182 -4.4258 -1.3320 13 6 3.8230 -4.3659 -2.1726 14 6 3.7072 -5.4929 -3.2204 15 6 2.7133 -6.4829 -2.5574 16 1 3.2249 -7.1368 -1.8512 17 6 1.9658 -7.2992 -3.6136 18 6 2.9159 -8.3282 -4.2296 19 7 2.2000 -9.1102 -5.2405 20 6 2.8516 -10.0974 -5.9304 21 1 3.8931 -10.2998 -5.7290 22 6 2.1734 -10.8381 -6.8888 23 7 0.9041 -10.5912 -7.1346 24 14 3.0621 -12.1853 -7.8294 25 1 2.1233 -12.8216 -8.7881 26 1 4.2056 -11.5981 -8.5729 27 1 3.5639 -13.2068 -6.8754 28 6 1.7532 -5.5140 -1.8226 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1299 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 4.2845 -2.9974 0.3640 37 1 3.4654 -1.8551 -0.7279 38 1 3.8782 -3.3990 -2.6728 39 1 4.7111 -4.5169 -1.5589 40 1 4.6742 -5.9687 -3.3835 41 1 3.3022 -5.1090 -4.1566 42 1 1.5965 -6.6331 -4.3934 43 1 1.1256 -7.8139 -3.1475 44 1 3.2852 -8.9942 -3.4498 45 1 3.7562 -7.8135 -4.6957 46 1 1.2646 -8.9283 -5.4218 47 1 0.4426 -9.8918 -6.6459 48 1 1.0065 -5.1229 -2.5137 49 1 1.2683 -6.0209 -0.9883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272581954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:25 Heat of formation + Delta-G solvation = 58.997294 kcal Electronic energy + Delta-G solvation = -28773.664945 eV Core-core repulsion = 24772.469460 eV Total energy + Delta-G solvation = -4001.195485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.34882 -41.39189 -39.20441 -37.22980 -37.12983 -36.49012 -34.83307 -32.82495 -32.48443 -30.62812 -30.51189 -28.42743 -28.14960 -25.77000 -25.53336 -24.72883 -23.88981 -23.30700 -21.80516 -21.34720 -20.71511 -19.38338 -19.02795 -18.67735 -17.63848 -17.38354 -16.99662 -16.64491 -16.22117 -15.98292 -15.81767 -15.66222 -15.33569 -15.24081 -14.58107 -14.46655 -14.23750 -14.11780 -13.99645 -13.76266 -13.34670 -13.24208 -13.13075 -13.10984 -12.80606 -12.73890 -12.59361 -12.53500 -12.34416 -12.34145 -12.32235 -12.08857 -11.93908 -11.86507 -11.63280 -11.58344 -11.33591 -11.22260 -11.03502 -10.91429 -9.86935 -9.11911 -8.41042 -5.35178 0.02683 0.76272 1.08390 1.19579 1.58940 1.68876 1.73380 1.85288 2.71462 2.82653 3.03360 3.08565 3.38896 3.45719 3.52261 3.56539 3.72198 3.80234 3.97470 4.00570 4.01342 4.13395 4.26188 4.28827 4.32289 4.37349 4.48735 4.54299 4.58424 4.69045 4.73979 4.75562 4.78696 4.81571 4.87348 4.88763 4.91331 4.97577 5.10873 5.16055 5.22579 5.24186 5.29824 5.33565 5.38901 5.57878 6.22167 6.48585 6.74146 7.09161 7.43282 7.99804 8.09790 9.11133 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.028316 B = 0.001766 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.597534 B =15853.208219 C =16104.543895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 C -0.140 4.140 4 C 0.209 3.791 5 N -0.329 5.329 6 N -0.106 5.106 7 N -0.104 5.104 8 N -0.293 5.293 9 C 0.094 3.906 10 C 0.513 3.487 11 O -0.580 6.580 12 N -0.604 5.604 13 C 0.090 3.910 14 C -0.125 4.125 15 C -0.087 4.087 16 H 0.085 0.915 17 C -0.103 4.103 18 C 0.159 3.841 19 N -0.763 5.763 20 C -0.336 4.336 21 H 0.068 0.932 22 C -0.108 4.108 23 N -0.976 5.976 24 Si 1.128 2.872 25 H -0.294 1.294 26 H -0.274 1.274 27 H -0.279 1.279 28 C 0.113 3.887 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.036 0.964 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.174 0.826 37 H 0.192 0.808 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.013 0.987 45 H 0.032 0.968 46 H 0.360 0.640 47 H 0.244 0.756 48 H 0.075 0.925 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.319 26.280 9.942 29.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 C -0.198 4.198 4 C -0.069 4.069 5 N -0.178 5.178 6 N -0.100 5.100 7 N -0.090 5.090 8 N -0.094 5.094 9 C -0.030 4.030 10 C 0.300 3.700 11 O -0.460 6.460 12 N -0.336 5.336 13 C -0.031 4.031 14 C -0.163 4.163 15 C -0.107 4.107 16 H 0.104 0.896 17 C -0.142 4.142 18 C 0.033 3.967 19 N -0.407 5.407 20 C -0.467 4.467 21 H 0.086 0.914 22 C -0.299 4.299 23 N -0.624 5.624 24 Si 0.953 3.047 25 H -0.220 1.220 26 H -0.200 1.200 27 H -0.205 1.205 28 C -0.010 4.010 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.056 0.944 32 H 0.140 0.860 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.191 0.809 37 H 0.209 0.791 38 H 0.130 0.870 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.031 0.969 45 H 0.050 0.950 46 H 0.191 0.809 47 H 0.054 0.946 48 H 0.093 0.907 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.008 24.895 10.679 28.547 hybrid contribution -0.730 0.471 0.621 1.068 sum 8.278 25.366 11.299 28.976 Atomic orbital electron populations 1.21828 0.92323 1.01774 1.04200 1.20123 0.97301 0.97117 0.88667 1.21855 1.01763 0.91945 1.04201 1.26824 0.93330 0.88431 0.98324 1.74870 1.20539 1.22539 0.99807 1.78573 1.07913 0.99899 1.23630 1.78789 1.20747 1.20866 0.88617 1.48126 1.34446 1.20065 1.06778 1.22477 0.98488 0.95430 0.86570 1.20445 0.87074 0.82999 0.79513 1.90832 1.29115 1.72070 1.53967 1.48446 1.23153 1.32459 1.29578 1.22575 0.86530 1.01503 0.92485 1.22761 1.00582 0.94721 0.98200 1.22172 0.96159 0.95757 0.96588 0.89649 1.21513 0.97918 0.97084 0.97644 1.20741 0.94505 0.91702 0.89790 1.42665 1.10918 1.41524 1.45625 1.20410 0.96313 1.12404 1.17594 0.91382 1.27272 0.97266 1.05123 1.00200 1.71001 1.10885 1.35035 1.45471 0.82625 0.73767 0.73257 0.75082 1.22009 1.19980 1.20492 1.22244 0.93525 0.87348 0.97865 0.92433 0.88016 0.94435 0.86020 0.91427 0.88180 0.92630 0.80898 0.79106 0.86964 0.88084 0.88522 0.89872 0.91338 0.92927 0.96944 0.95037 0.80861 0.94571 0.90697 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.18 71.98 0.66 -1.05 16 2 C -0.01 -0.10 3.26 -11.54 -0.04 -0.14 16 3 C -0.14 -0.83 9.17 71.98 0.66 -0.17 16 4 C 0.21 3.88 6.64 138.13 0.92 4.80 16 5 N -0.33 -8.60 12.36 -50.45 -0.62 -9.23 16 6 N -0.11 -3.17 13.43 37.01 0.50 -2.67 16 7 N -0.10 -2.70 13.29 37.02 0.49 -2.21 16 8 N -0.29 -5.32 2.83 -341.99 -0.97 -6.29 16 9 C 0.09 0.73 5.76 85.63 0.49 1.22 16 10 C 0.51 8.48 7.92 87.66 0.69 9.17 16 11 O -0.58 -16.65 16.69 -3.02 -0.05 -16.70 16 12 N -0.60 -8.02 3.33 -811.78 -2.70 -10.72 16 13 C 0.09 0.47 6.49 86.73 0.56 1.03 16 14 C -0.12 -1.43 5.90 31.78 0.19 -1.24 16 15 C -0.09 -1.60 3.01 -9.39 -0.03 -1.63 16 16 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 17 C -0.10 -2.77 4.84 30.59 0.15 -2.62 16 18 C 0.16 5.75 6.16 86.38 0.53 6.28 16 19 N -0.76 -37.57 5.60 -343.47 -1.92 -39.50 16 20 C -0.34 -18.62 9.99 84.03 0.84 -17.78 16 21 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 22 C -0.11 -6.19 5.50 84.86 0.47 -5.72 16 23 N -0.98 -60.62 13.70 21.65 0.30 -60.32 16 24 Si 1.13 50.83 29.92 68.60 2.05 52.89 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 28 C 0.11 2.11 6.37 86.86 0.55 2.66 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.12 0.36 6.84 -2.39 -0.02 0.34 16 33 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.10 0.13 8.14 -2.38 -0.02 0.11 16 35 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.17 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.19 -0.60 7.12 -2.39 -0.02 -0.62 16 38 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.10 0.09 8.14 -2.39 -0.02 0.08 16 40 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.08 1.01 7.91 -2.39 -0.02 0.99 16 42 H 0.07 1.81 7.97 -2.39 -0.02 1.79 16 43 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.03 1.09 7.75 -2.39 -0.02 1.07 16 46 H 0.36 18.41 6.50 -92.71 -0.60 17.81 16 47 H 0.24 15.05 6.77 -92.71 -0.63 14.42 16 48 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 49 H 0.06 1.36 8.04 -2.39 -0.02 1.34 16 Total: -1.00 -88.63 403.27 4.21 -84.42 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.49 Total: 15.51 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 6.65 Total: -5.18 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -4.93 Total: -130.93 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.05 Total: -16.70 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.05 Total: 52.89 kcal Total: -88.63 4.21 -84.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272581954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.422 kcal (2) G-P(sol) polarization free energy of solvation -88.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds