Wall clock time and date at job start Tue Mar 31 2020 19:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47156 * 2 1 4 4 C 1.50700 * 109.47038 * 119.99947 * 2 1 3 5 5 N 1.31075 * 126.65839 * 300.03947 * 4 2 1 6 6 N 1.28843 * 107.98922 * 179.97438 * 5 4 2 7 7 N 1.28739 * 109.39673 * 359.73618 * 6 5 4 8 8 N 1.29022 * 108.81015 * 0.43955 * 7 6 5 9 9 C 1.46494 * 126.44141 * 179.83605 * 8 7 6 10 10 C 1.50700 * 109.47010 * 269.68783 * 9 8 7 11 11 O 1.21284 * 120.00164 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99963 * 180.02562 * 10 9 8 13 13 C 1.46932 * 120.62883 * 180.02562 * 12 10 9 14 14 C 1.53192 * 108.77844 * 126.36628 * 13 12 10 15 15 C 1.53045 * 109.30943 * 54.63390 * 14 13 12 16 16 C 1.53003 * 109.45779 * 178.62811 * 15 14 13 17 17 N 1.46490 * 109.46384 * 58.65283 * 15 14 13 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 C 1.53044 * 109.52582 * 298.63661 * 15 14 13 27 27 C 1.46920 * 120.63159 * 359.96999 * 12 10 9 28 28 H 1.09004 * 109.46785 * 299.99961 * 1 2 3 29 29 H 1.08998 * 109.47116 * 60.00361 * 1 2 3 30 30 H 1.08997 * 109.46972 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47148 * 239.99578 * 2 1 3 32 32 H 1.09000 * 109.47161 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46813 * 299.99825 * 3 2 1 34 34 H 1.08996 * 109.47002 * 60.00054 * 3 2 1 35 35 H 1.08994 * 109.47518 * 149.68688 * 9 8 7 36 36 H 1.09009 * 109.46985 * 29.67863 * 9 8 7 37 37 H 1.08996 * 109.58846 * 6.57565 * 13 12 10 38 38 H 1.09003 * 109.57689 * 246.15068 * 13 12 10 39 39 H 1.08995 * 109.49437 * 294.68286 * 14 13 12 40 40 H 1.08996 * 109.52274 * 174.59662 * 14 13 12 41 41 H 1.08997 * 109.46965 * 300.02851 * 16 15 14 42 42 H 1.09002 * 109.46920 * 60.02578 * 16 15 14 43 43 H 1.08994 * 109.46997 * 180.02562 * 16 15 14 44 44 H 0.97000 * 120.00577 * 359.97352 * 17 15 14 45 45 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 46 46 H 1.09000 * 109.49970 * 181.31217 * 26 15 14 47 47 H 1.09001 * 109.50257 * 301.41366 * 26 15 14 48 48 H 1.08998 * 109.58779 * 353.42447 * 27 12 10 49 49 H 1.09004 * 109.58787 * 113.70161 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7969 -0.3787 2.4765 6 7 2.3980 -1.2292 3.2351 7 7 3.0062 -2.0980 2.5052 8 7 2.8095 -1.8089 1.2633 9 6 3.3289 -2.5421 0.1063 10 6 4.6670 -1.9731 -0.2896 11 8 5.1404 -1.0466 0.3337 12 7 5.3376 -2.4937 -1.3363 13 6 6.6435 -1.9500 -1.7340 14 6 7.6585 -3.0961 -1.7899 15 6 7.1287 -4.1967 -2.7119 16 6 8.1553 -5.3280 -2.7973 17 7 6.8986 -3.6446 -4.0491 18 6 6.4220 -4.4492 -5.0494 19 1 6.2154 -5.4907 -4.8525 20 6 6.2045 -3.9261 -6.3168 21 7 6.4568 -2.6568 -6.5570 22 14 5.5537 -5.0236 -7.6811 23 1 5.4101 -4.2304 -8.9283 24 1 6.5035 -6.1415 -7.9126 25 1 4.2308 -5.5714 -7.2873 26 6 5.8131 -4.7433 -2.1527 27 6 4.7775 -3.6165 -2.1006 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 2.6326 -2.4467 -0.7268 36 1 3.4440 -3.5948 0.3650 37 1 6.9686 -1.2092 -1.0036 38 1 6.5618 -1.4859 -2.7169 39 1 7.8064 -3.5002 -0.7885 40 1 8.6074 -2.7237 -2.1759 41 1 9.0922 -4.9391 -3.1959 42 1 8.3266 -5.7390 -1.8023 43 1 7.7784 -6.1118 -3.4542 44 1 7.0838 -2.7090 -4.2261 45 1 6.7944 -2.0869 -5.8484 46 1 5.4482 -5.5430 -2.7971 47 1 5.9784 -5.1319 -1.1478 48 1 3.8716 -3.9752 -1.6121 49 1 4.5411 -3.2878 -3.1127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274382884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:35 Heat of formation + Delta-G solvation = 71.162603 kcal Electronic energy + Delta-G solvation = -30715.298991 eV Core-core repulsion = 26714.631033 eV Total energy + Delta-G solvation = -4000.667957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.33536 -41.57520 -39.53181 -37.21075 -36.52386 -36.31747 -34.45013 -32.74160 -32.30304 -30.73755 -30.21260 -28.90724 -28.15363 -25.77640 -25.51695 -24.95615 -24.37858 -23.78031 -21.89709 -21.24687 -20.04627 -19.12342 -18.89972 -18.50937 -17.64241 -17.15283 -16.85680 -16.63053 -16.29520 -15.81238 -15.63377 -15.34506 -15.07981 -14.95369 -14.85539 -14.36465 -14.23901 -14.19158 -13.84346 -13.60319 -13.31366 -13.21728 -13.12880 -12.82934 -12.75979 -12.73319 -12.58261 -12.50600 -12.34615 -12.32279 -12.27400 -12.14598 -11.93870 -11.90920 -11.76857 -11.47730 -11.21931 -10.97919 -10.93871 -10.78086 -9.82013 -8.96770 -8.20528 -5.15558 0.05009 0.76096 1.09299 1.21712 1.65267 1.72669 1.80045 1.88047 2.79426 2.82566 3.03325 3.09132 3.51256 3.54467 3.68033 3.75235 3.85770 3.88412 3.97384 4.01321 4.06223 4.14151 4.19674 4.31310 4.33064 4.53875 4.58582 4.60450 4.69202 4.73929 4.74809 4.78881 4.86739 4.89141 4.92911 4.96249 4.99989 5.09066 5.10680 5.20042 5.23291 5.31049 5.31751 5.48872 5.56789 5.80123 6.19148 6.65303 6.78393 7.23470 7.44738 8.14497 8.27376 9.30672 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.003199 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.505808 B = 8750.610934 C = 9677.240337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.014 4.014 3 C -0.141 4.141 4 C 0.209 3.791 5 N -0.325 5.325 6 N -0.105 5.105 7 N -0.102 5.102 8 N -0.291 5.291 9 C 0.089 3.911 10 C 0.502 3.498 11 O -0.576 6.576 12 N -0.584 5.584 13 C 0.123 3.877 14 C -0.122 4.122 15 C 0.193 3.807 16 C -0.145 4.145 17 N -0.735 5.735 18 C -0.298 4.298 19 H 0.070 0.930 20 C -0.104 4.104 21 N -0.984 5.984 22 Si 1.114 2.886 23 H -0.305 1.305 24 H -0.288 1.288 25 H -0.274 1.274 26 C -0.132 4.132 27 C 0.113 3.887 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.036 0.964 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.181 0.819 36 H 0.174 0.826 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.034 0.966 42 H 0.066 0.934 43 H 0.042 0.958 44 H 0.357 0.643 45 H 0.243 0.757 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.116 0.884 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 -1.261 10.231 14.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 C -0.199 4.199 4 C -0.069 4.069 5 N -0.174 5.174 6 N -0.098 5.098 7 N -0.088 5.088 8 N -0.091 5.091 9 C -0.035 4.035 10 C 0.289 3.711 11 O -0.456 6.456 12 N -0.316 5.316 13 C 0.000 4.000 14 C -0.161 4.161 15 C 0.103 3.897 16 C -0.205 4.205 17 N -0.378 5.378 18 C -0.430 4.430 19 H 0.088 0.912 20 C -0.295 4.295 21 N -0.633 5.633 22 Si 0.942 3.058 23 H -0.232 1.232 24 H -0.215 1.215 25 H -0.200 1.200 26 C -0.172 4.172 27 C -0.008 4.008 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.130 0.870 32 H 0.056 0.944 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.198 0.802 36 H 0.191 0.809 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.190 0.810 45 H 0.053 0.947 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.134 0.866 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.165 -1.270 10.438 14.625 hybrid contribution 1.349 0.443 0.393 1.473 sum -8.816 -0.827 10.831 13.990 Atomic orbital electron populations 1.21844 0.90116 1.03409 1.04265 1.20097 0.98704 0.96074 0.88664 1.21810 1.00289 0.93600 1.04224 1.26717 0.93647 0.88250 0.98264 1.74863 1.21573 1.21439 0.99519 1.78542 1.08030 0.99725 1.23521 1.78776 1.19402 1.22174 0.88403 1.48083 1.33329 1.20992 1.06744 1.22511 0.95149 0.99412 0.86441 1.20671 0.87085 0.83190 0.80180 1.90780 1.69857 1.30760 1.54231 1.48045 1.20027 1.34161 1.29360 1.21435 0.82392 0.96336 0.99854 1.22034 0.98027 0.95757 1.00267 1.19769 0.93479 0.92168 0.84234 1.22141 0.98689 0.98928 1.00693 1.42691 1.79177 1.09107 1.06821 1.20138 1.36933 0.94033 0.91886 0.91173 1.26697 1.02909 0.99264 1.00624 1.71002 1.50934 1.06339 1.35036 0.82756 0.76381 0.72980 0.73660 1.23193 1.21511 1.19964 1.22221 0.96169 0.97738 1.01033 1.21893 0.97016 0.85358 0.96567 0.92103 0.88429 0.91605 0.86998 0.94427 0.88330 0.91907 0.80162 0.80860 0.90186 0.92410 0.89961 0.91099 0.94667 0.91518 0.93899 0.81028 0.94653 0.90976 0.90359 0.86563 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.18 71.98 0.66 -0.94 16 2 C -0.01 -0.22 3.26 -11.54 -0.04 -0.26 16 3 C -0.14 -2.44 9.18 71.98 0.66 -1.78 16 4 C 0.21 4.94 6.64 138.13 0.92 5.86 16 5 N -0.33 -9.66 12.36 -50.45 -0.62 -10.28 16 6 N -0.10 -3.43 13.43 37.01 0.50 -2.93 16 7 N -0.10 -3.02 13.29 37.02 0.49 -2.52 16 8 N -0.29 -6.83 2.83 -341.98 -0.97 -7.80 16 9 C 0.09 1.39 4.91 85.63 0.42 1.81 16 10 C 0.50 12.12 7.77 87.66 0.68 12.80 16 11 O -0.58 -19.33 15.84 -3.04 -0.05 -19.38 16 12 N -0.58 -14.07 2.97 -819.02 -2.43 -16.51 16 13 C 0.12 3.48 6.16 86.36 0.53 4.01 16 14 C -0.12 -3.35 4.96 30.67 0.15 -3.20 16 15 C 0.19 5.94 0.74 3.64 0.00 5.94 16 16 C -0.15 -4.43 8.44 71.98 0.61 -3.82 16 17 N -0.74 -29.92 4.14 -303.23 -1.25 -31.17 16 18 C -0.30 -13.91 8.68 84.03 0.73 -13.18 16 19 H 0.07 3.18 6.70 -2.91 -0.02 3.16 16 20 C -0.10 -5.33 5.50 84.86 0.47 -4.87 16 21 N -0.98 -56.28 13.70 21.65 0.30 -55.98 16 22 Si 1.11 47.23 29.92 68.60 2.05 49.29 16 23 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.29 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 26 C -0.13 -3.27 4.70 30.65 0.14 -3.13 16 27 C 0.11 2.47 6.08 86.34 0.52 3.00 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.11 1.31 6.85 -2.39 -0.02 1.29 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 33 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.18 1.30 6.93 -2.39 -0.02 1.28 16 36 H 0.17 1.67 7.69 -2.38 -0.02 1.66 16 37 H 0.08 2.38 7.00 -2.39 -0.02 2.36 16 38 H 0.06 1.87 6.94 -2.39 -0.02 1.85 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.04 1.42 7.27 -2.39 -0.02 1.40 16 44 H 0.36 15.95 5.29 -92.71 -0.49 15.45 16 45 H 0.24 13.83 6.77 -92.71 -0.63 13.20 16 46 H 0.07 1.96 7.31 -2.39 -0.02 1.94 16 47 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.12 1.40 5.93 -2.39 -0.01 1.38 16 49 H 0.07 1.94 7.75 -2.38 -0.02 1.92 16 Total: -1.00 -73.43 387.99 5.09 -68.34 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.62 Total: 26.71 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 6.46 Total: 2.25 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -4.00 Total: -127.20 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.05 Total: -19.38 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.05 Total: 49.29 kcal Total: -73.43 5.09 -68.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274382884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.505 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds