Wall clock time and date at job start Tue Mar 31 2020 19:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47177 * 2 1 4 4 C 1.50700 * 109.46829 * 120.00485 * 2 1 3 5 5 N 1.31080 * 126.65841 * 299.67626 * 4 2 1 6 6 N 1.28840 * 107.98720 * 179.89981 * 5 4 2 7 7 N 1.28735 * 109.39820 * 0.38159 * 6 5 4 8 8 N 1.29016 * 108.80932 * 359.76395 * 7 6 5 9 9 C 1.46509 * 126.43815 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47107 * 269.98064 * 9 8 7 11 11 O 1.21281 * 120.00108 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99741 * 180.02562 * 10 9 8 13 13 C 1.47425 * 125.64822 * 355.60950 * 12 10 9 14 14 C 1.54908 * 104.83164 * 155.83394 * 13 12 10 15 15 C 1.55167 * 101.57715 * 37.01223 * 14 13 12 16 16 C 1.47020 * 125.64835 * 175.30585 * 12 10 9 17 17 H 1.09002 * 109.87956 * 300.51346 * 16 12 10 18 18 C 1.52998 * 109.88084 * 61.67641 * 16 12 10 19 19 N 1.46502 * 109.46980 * 185.55943 * 18 16 12 20 20 C 1.46502 * 119.99616 * 85.97362 * 19 18 16 21 21 C 1.36934 * 120.00153 * 265.97063 * 19 18 16 22 22 H 1.08003 * 119.99698 * 12.51484 * 21 19 18 23 23 C 1.38808 * 119.99946 * 192.51478 * 21 19 18 24 24 N 1.31615 * 120.00422 * 15.10904 * 23 21 19 25 25 Si 1.86800 * 119.99926 * 195.10509 * 23 21 19 26 26 H 1.48510 * 109.47096 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47310 * 119.99989 * 25 23 21 28 28 H 1.48505 * 109.47179 * 240.00175 * 25 23 21 29 29 H 1.09003 * 109.47156 * 300.00222 * 1 2 3 30 30 H 1.08999 * 109.47115 * 59.99674 * 1 2 3 31 31 H 1.08996 * 109.47424 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46599 * 239.99701 * 2 1 3 33 33 H 1.08998 * 109.46998 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47364 * 300.00174 * 3 2 1 35 35 H 1.09006 * 109.46957 * 60.00266 * 3 2 1 36 36 H 1.09005 * 109.46671 * 29.97888 * 9 8 7 37 37 H 1.08998 * 109.46699 * 149.97833 * 9 8 7 38 38 H 1.08994 * 110.37055 * 274.67856 * 13 12 10 39 39 H 1.09005 * 110.36611 * 37.00278 * 13 12 10 40 40 H 1.09002 * 111.00264 * 155.08160 * 14 13 12 41 41 H 1.09000 * 111.00915 * 278.94317 * 14 13 12 42 42 H 1.09002 * 110.71751 * 82.86003 * 15 14 13 43 43 H 1.09001 * 110.71718 * 206.12792 * 15 14 13 44 44 H 1.09000 * 109.47437 * 305.55989 * 18 16 12 45 45 H 1.08993 * 109.47471 * 65.55925 * 18 16 12 46 46 H 1.08998 * 109.47797 * 354.67764 * 20 19 18 47 47 H 1.08998 * 109.47021 * 114.68261 * 20 19 18 48 48 H 1.09004 * 109.46804 * 234.67630 * 20 19 18 49 49 H 0.97003 * 120.00428 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8023 -0.3751 2.4765 6 7 2.3999 -1.2281 3.2350 7 7 3.0117 -2.0943 2.5051 8 7 2.8091 -1.8091 1.2632 9 6 3.3269 -2.5436 0.1061 10 6 4.6647 -1.9754 -0.2920 11 8 5.1387 -1.0479 0.3292 12 7 5.3338 -2.4972 -1.3392 13 6 4.9202 -3.6761 -2.1219 14 6 5.6049 -3.4973 -3.4999 15 6 6.9682 -2.8786 -3.0922 16 6 6.5938 -1.9814 -1.8940 17 1 6.4583 -0.9524 -2.2270 18 6 7.6948 -2.0476 -0.8338 19 7 8.9090 -1.4111 -1.3504 20 6 9.0905 0.0365 -1.2174 21 6 9.8743 -2.1693 -1.9574 22 1 9.6619 -3.1904 -2.2378 23 6 11.1257 -1.6254 -2.2124 24 7 11.4906 -0.5078 -1.6207 25 14 12.2920 -2.4798 -3.3953 26 1 11.6485 -3.7097 -3.9232 27 1 12.6125 -1.5660 -4.5211 28 1 13.5425 -2.8434 -2.6815 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 3.4418 -3.5961 0.3656 37 1 2.6295 -2.4486 -0.7262 38 1 5.2670 -4.5910 -1.6417 39 1 3.8363 -3.6942 -2.2364 40 1 5.7444 -4.4586 -3.9945 41 1 5.0387 -2.8130 -4.1317 42 1 7.6702 -3.6565 -2.7917 43 1 7.3788 -2.2804 -3.9056 44 1 7.3656 -1.5262 0.0651 45 1 7.9051 -3.0895 -0.5929 46 1 8.1869 0.4791 -0.7984 47 1 9.9337 0.2378 -0.5566 48 1 9.2862 0.4698 -2.1983 49 1 12.3652 -0.1279 -1.7986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275150752.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:54 Heat of formation + Delta-G solvation = 113.789353 kcal Electronic energy + Delta-G solvation = -30494.170976 eV Core-core repulsion = 26495.351454 eV Total energy + Delta-G solvation = -3998.819523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.28548 -40.32029 -37.79547 -36.40905 -35.49425 -35.35695 -32.13364 -31.52677 -31.48157 -29.59458 -28.62448 -27.54565 -25.92839 -25.39214 -24.58814 -23.92152 -22.76311 -21.43366 -21.03238 -20.44234 -19.17065 -18.04341 -17.54324 -16.96668 -16.47937 -16.16027 -16.00198 -15.32605 -14.85038 -14.77849 -14.65984 -13.81220 -13.61778 -13.59430 -13.44988 -13.29310 -13.06193 -12.96475 -12.68716 -12.53206 -12.31440 -12.21292 -11.99741 -11.95020 -11.67713 -11.50005 -11.45926 -11.35573 -11.18650 -11.08350 -10.88130 -10.78472 -10.57824 -10.47317 -10.18378 -10.12878 -10.02654 -9.80324 -9.67529 -8.85489 -8.52911 -6.85320 -5.63367 -3.13794 1.06869 1.65828 2.19244 2.29439 2.80391 3.35520 3.41115 3.44280 3.63742 3.89097 3.98287 4.16030 4.40630 4.46336 4.51526 4.61237 4.73732 4.81983 4.90005 4.93280 5.23596 5.26002 5.29090 5.31918 5.38765 5.48753 5.50497 5.53745 5.55377 5.60722 5.64508 5.77954 5.82748 5.86095 5.92975 5.98828 6.12120 6.16459 6.40023 6.49907 6.64482 6.82075 6.87606 7.37783 7.43026 7.73862 7.89477 7.94021 8.38910 8.54271 9.23140 9.87877 10.33263 11.32519 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017486 B = 0.002931 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.917342 B = 9552.343180 C =10024.081810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.010 4.010 3 C -0.145 4.145 4 C 0.202 3.798 5 N -0.301 5.301 6 N -0.074 5.074 7 N -0.084 5.084 8 N -0.293 5.293 9 C 0.096 3.904 10 C 0.510 3.490 11 O -0.511 6.511 12 N -0.604 5.604 13 C 0.092 3.908 14 C -0.137 4.137 15 C -0.109 4.109 16 C 0.117 3.883 17 H 0.071 0.929 18 C 0.146 3.854 19 N -0.599 5.599 20 C 0.153 3.847 21 C -0.249 4.249 22 H 0.073 0.927 23 C -0.004 4.004 24 N -0.907 5.907 25 Si 0.903 3.097 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.292 1.292 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.000 1.000 47 H 0.067 0.933 48 H 0.016 0.984 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.090 -4.956 -4.917 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 C -0.203 4.203 4 C -0.076 4.076 5 N -0.149 5.149 6 N -0.068 5.068 7 N -0.069 5.069 8 N -0.094 5.094 9 C -0.030 4.030 10 C 0.294 3.706 11 O -0.386 6.386 12 N -0.339 5.339 13 C -0.031 4.031 14 C -0.175 4.175 15 C -0.147 4.147 16 C 0.012 3.988 17 H 0.089 0.911 18 C 0.017 3.983 19 N -0.321 5.321 20 C 0.008 3.992 21 C -0.378 4.378 22 H 0.091 0.909 23 C -0.202 4.202 24 N -0.554 5.554 25 Si 0.734 3.266 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.219 1.219 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.019 0.981 47 H 0.086 0.914 48 H 0.035 0.965 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -22.554 -4.480 -3.067 23.198 hybrid contribution 0.875 -0.592 -1.752 2.046 sum -21.678 -5.072 -4.819 22.780 Atomic orbital electron populations 1.21850 0.91998 1.02567 1.03703 1.19781 0.97202 0.96688 0.89520 1.21834 1.02249 0.92887 1.03332 1.26056 0.95005 0.88600 0.97976 1.74936 1.20951 1.20726 0.98319 1.78598 1.06870 0.98898 1.22397 1.78898 1.18741 1.22069 0.87180 1.47874 1.33633 1.21020 1.06872 1.22000 0.96397 0.98567 0.86036 1.19761 0.85819 0.84235 0.80737 1.90854 1.67908 1.28505 1.51294 1.48656 1.24877 1.30065 1.30301 1.22468 0.99108 0.88825 0.92667 1.22835 0.97562 1.01897 0.95180 1.22593 0.95467 0.99386 0.97286 1.22810 0.82457 0.97501 0.96019 0.91069 1.21030 0.86294 0.97332 0.93692 1.43925 1.16170 1.03916 1.68103 1.21109 0.96693 0.81788 0.99577 1.19270 0.91208 0.96122 1.31221 0.90892 1.24873 0.96984 0.97801 1.00496 1.70103 1.19853 1.21668 1.43740 0.86201 0.81026 0.78564 0.80856 1.20456 1.21709 1.21893 0.90906 0.90807 0.92463 0.89280 0.91668 0.90923 0.91031 0.84242 0.84705 0.90712 0.91076 0.89931 0.90909 0.89915 0.89777 0.93199 0.93517 0.98107 0.91445 0.96532 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.18 37.16 0.34 -0.54 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -1.30 9.18 37.16 0.34 -0.96 16 4 C 0.20 2.47 6.64 -155.43 -1.03 1.44 16 5 N -0.30 -4.55 12.36 32.70 0.40 -4.14 16 6 N -0.07 -1.24 13.43 60.35 0.81 -0.43 16 7 N -0.08 -1.31 13.29 60.35 0.80 -0.50 16 8 N -0.29 -3.69 2.83 -59.43 -0.17 -3.85 16 9 C 0.10 0.84 5.51 -5.19 -0.03 0.81 16 10 C 0.51 6.76 7.73 -10.98 -0.08 6.68 16 11 O -0.51 -9.51 15.23 5.56 0.08 -9.43 16 12 N -0.60 -7.46 3.07 -163.03 -0.50 -7.96 16 13 C 0.09 0.73 6.73 -2.53 -0.02 0.72 16 14 C -0.14 -1.22 7.08 -24.58 -0.17 -1.39 16 15 C -0.11 -1.53 5.70 -24.90 -0.14 -1.67 16 16 C 0.12 1.89 3.14 -66.96 -0.21 1.68 16 17 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 18 C 0.15 3.03 5.07 -4.04 -0.02 3.01 16 19 N -0.60 -14.89 2.85 -181.12 -0.52 -15.41 16 20 C 0.15 3.92 9.07 59.85 0.54 4.46 16 21 C -0.25 -6.55 8.98 -15.06 -0.14 -6.69 16 22 H 0.07 1.82 6.89 -52.48 -0.36 1.46 16 23 C 0.00 -0.12 5.27 -17.43 -0.09 -0.21 16 24 N -0.91 -26.41 10.15 55.49 0.56 -25.85 16 25 Si 0.90 21.36 29.58 -169.99 -5.03 16.33 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.56 6.85 -51.93 -0.36 0.20 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.14 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.14 0.57 6.93 -51.93 -0.36 0.21 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.31 7.47 -51.93 -0.39 -0.08 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.28 6.70 -51.93 -0.35 0.94 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.05 1.14 6.47 -51.93 -0.34 0.81 16 45 H 0.05 0.97 7.87 -51.93 -0.41 0.56 16 46 H 0.00 0.01 7.89 -51.93 -0.41 -0.40 16 47 H 0.07 1.92 6.34 -51.93 -0.33 1.59 16 48 H 0.02 0.43 7.96 -51.93 -0.41 0.02 16 49 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -35.67 394.04 -6.54 -42.20 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -7.92 Total: -3.85 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -1.01 Total: 6.95 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 1.40 Total: -58.15 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.67 -6.54 -42.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275150752.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.992 kcal (2) G-P(sol) polarization free energy of solvation -35.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds