Wall clock time and date at job start Tue Mar 31 2020 19:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47177 * 2 1 4 4 C 1.50700 * 109.46829 * 120.00485 * 2 1 3 5 5 N 1.31080 * 126.65841 * 299.67626 * 4 2 1 6 6 N 1.28840 * 107.98720 * 179.89981 * 5 4 2 7 7 N 1.28735 * 109.39820 * 0.38159 * 6 5 4 8 8 N 1.29016 * 108.80932 * 359.76395 * 7 6 5 9 9 C 1.46509 * 126.43815 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47107 * 269.98064 * 9 8 7 11 11 O 1.21281 * 120.00108 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99741 * 180.02562 * 10 9 8 13 13 C 1.47425 * 125.64822 * 355.60950 * 12 10 9 14 14 C 1.54908 * 104.83164 * 155.83394 * 13 12 10 15 15 C 1.55167 * 101.57715 * 37.01223 * 14 13 12 16 16 C 1.47020 * 125.64835 * 175.30585 * 12 10 9 17 17 H 1.09002 * 109.87956 * 300.51346 * 16 12 10 18 18 C 1.52998 * 109.88084 * 61.67641 * 16 12 10 19 19 N 1.46502 * 109.46980 * 185.55943 * 18 16 12 20 20 C 1.46502 * 119.99616 * 85.97362 * 19 18 16 21 21 C 1.36934 * 120.00153 * 265.97063 * 19 18 16 22 22 H 1.08003 * 119.99698 * 12.51484 * 21 19 18 23 23 C 1.38808 * 119.99946 * 192.51478 * 21 19 18 24 24 N 1.31615 * 120.00422 * 15.10904 * 23 21 19 25 25 Si 1.86800 * 119.99926 * 195.10509 * 23 21 19 26 26 H 1.48510 * 109.47096 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47310 * 119.99989 * 25 23 21 28 28 H 1.48505 * 109.47179 * 240.00175 * 25 23 21 29 29 H 1.09003 * 109.47156 * 300.00222 * 1 2 3 30 30 H 1.08999 * 109.47115 * 59.99674 * 1 2 3 31 31 H 1.08996 * 109.47424 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46599 * 239.99701 * 2 1 3 33 33 H 1.08998 * 109.46998 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47364 * 300.00174 * 3 2 1 35 35 H 1.09006 * 109.46957 * 60.00266 * 3 2 1 36 36 H 1.09005 * 109.46671 * 29.97888 * 9 8 7 37 37 H 1.08998 * 109.46699 * 149.97833 * 9 8 7 38 38 H 1.08994 * 110.37055 * 274.67856 * 13 12 10 39 39 H 1.09005 * 110.36611 * 37.00278 * 13 12 10 40 40 H 1.09002 * 111.00264 * 155.08160 * 14 13 12 41 41 H 1.09000 * 111.00915 * 278.94317 * 14 13 12 42 42 H 1.09002 * 110.71751 * 82.86003 * 15 14 13 43 43 H 1.09001 * 110.71718 * 206.12792 * 15 14 13 44 44 H 1.09000 * 109.47437 * 305.55989 * 18 16 12 45 45 H 1.08993 * 109.47471 * 65.55925 * 18 16 12 46 46 H 1.08998 * 109.47797 * 354.67764 * 20 19 18 47 47 H 1.08998 * 109.47021 * 114.68261 * 20 19 18 48 48 H 1.09004 * 109.46804 * 234.67630 * 20 19 18 49 49 H 0.97003 * 120.00428 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8023 -0.3751 2.4765 6 7 2.3999 -1.2281 3.2350 7 7 3.0117 -2.0943 2.5051 8 7 2.8091 -1.8091 1.2632 9 6 3.3269 -2.5436 0.1061 10 6 4.6647 -1.9754 -0.2920 11 8 5.1387 -1.0479 0.3292 12 7 5.3338 -2.4972 -1.3392 13 6 4.9202 -3.6761 -2.1219 14 6 5.6049 -3.4973 -3.4999 15 6 6.9682 -2.8786 -3.0922 16 6 6.5938 -1.9814 -1.8940 17 1 6.4583 -0.9524 -2.2270 18 6 7.6948 -2.0476 -0.8338 19 7 8.9090 -1.4111 -1.3504 20 6 9.0905 0.0365 -1.2174 21 6 9.8743 -2.1693 -1.9574 22 1 9.6619 -3.1904 -2.2378 23 6 11.1257 -1.6254 -2.2124 24 7 11.4906 -0.5078 -1.6207 25 14 12.2920 -2.4798 -3.3953 26 1 11.6485 -3.7097 -3.9232 27 1 12.6125 -1.5660 -4.5211 28 1 13.5425 -2.8434 -2.6815 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 3.4418 -3.5961 0.3656 37 1 2.6295 -2.4486 -0.7262 38 1 5.2670 -4.5910 -1.6417 39 1 3.8363 -3.6942 -2.2364 40 1 5.7444 -4.4586 -3.9945 41 1 5.0387 -2.8130 -4.1317 42 1 7.6702 -3.6565 -2.7917 43 1 7.3788 -2.2804 -3.9056 44 1 7.3656 -1.5262 0.0651 45 1 7.9051 -3.0895 -0.5929 46 1 8.1869 0.4791 -0.7984 47 1 9.9337 0.2378 -0.5566 48 1 9.2862 0.4698 -2.1983 49 1 12.3652 -0.1279 -1.7986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275150752.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:53 Heat of formation + Delta-G solvation = 88.874486 kcal Electronic energy + Delta-G solvation = -30495.251366 eV Core-core repulsion = 26495.351454 eV Total energy + Delta-G solvation = -3999.899912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.30505 -41.39363 -38.96330 -37.20560 -37.15956 -36.43331 -33.63743 -32.89599 -32.44956 -30.88665 -29.69280 -28.12443 -28.03148 -26.82494 -25.49722 -25.06941 -23.85006 -22.91411 -21.99096 -21.52123 -20.29275 -19.02252 -18.82074 -18.48234 -17.63889 -17.29693 -16.83223 -16.65453 -16.21638 -15.80160 -15.53991 -15.42939 -15.14254 -14.70024 -14.47426 -14.27985 -14.20866 -13.92985 -13.81695 -13.67780 -13.51353 -13.23053 -13.10845 -12.92572 -12.79375 -12.70712 -12.65839 -12.46241 -12.32889 -12.31725 -12.28784 -12.07139 -11.97413 -11.91003 -11.87700 -11.59413 -11.47920 -11.17930 -10.90918 -10.75137 -9.84064 -8.88863 -7.72736 -5.26172 0.07222 0.83077 1.12654 1.32028 1.47513 1.47867 1.58660 1.83715 2.52040 2.86697 3.13225 3.15095 3.33309 3.56186 3.62013 3.80956 3.84429 3.86700 4.00411 4.04324 4.07033 4.17833 4.33407 4.36508 4.45494 4.50226 4.63049 4.69586 4.71361 4.75865 4.80885 4.85274 4.90730 4.94607 4.95911 5.09337 5.12003 5.14453 5.21440 5.25571 5.26243 5.36258 5.43590 5.46210 5.65249 5.72847 6.28474 6.41420 6.90932 7.12046 7.47455 7.83606 8.27945 9.23373 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017486 B = 0.002931 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.917342 B = 9552.343180 C =10024.081810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.010 4.010 3 C -0.143 4.143 4 C 0.209 3.791 5 N -0.330 5.330 6 N -0.108 5.108 7 N -0.105 5.105 8 N -0.292 5.292 9 C 0.097 3.903 10 C 0.506 3.494 11 O -0.577 6.577 12 N -0.600 5.600 13 C 0.087 3.913 14 C -0.121 4.121 15 C -0.110 4.110 16 C 0.130 3.870 17 H 0.045 0.955 18 C 0.150 3.850 19 N -0.614 5.614 20 C 0.174 3.826 21 C -0.245 4.245 22 H 0.088 0.912 23 C -0.068 4.068 24 N -0.947 5.947 25 Si 0.972 3.028 26 H -0.256 1.256 27 H -0.294 1.294 28 H -0.299 1.299 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.031 0.969 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.174 0.826 37 H 0.195 0.805 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.021 0.979 45 H 0.045 0.955 46 H 0.009 0.991 47 H 0.036 0.964 48 H 0.000 1.000 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.270 -7.924 -8.109 28.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.069 4.069 5 N -0.178 5.178 6 N -0.101 5.101 7 N -0.091 5.091 8 N -0.093 5.093 9 C -0.027 4.027 10 C 0.293 3.707 11 O -0.457 6.457 12 N -0.333 5.333 13 C -0.034 4.034 14 C -0.159 4.159 15 C -0.148 4.148 16 C 0.024 3.976 17 H 0.063 0.937 18 C 0.022 3.978 19 N -0.337 5.337 20 C 0.029 3.971 21 C -0.374 4.374 22 H 0.106 0.894 23 C -0.261 4.261 24 N -0.596 5.596 25 Si 0.801 3.199 26 H -0.180 1.180 27 H -0.221 1.221 28 H -0.227 1.227 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.050 0.950 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.191 0.809 37 H 0.212 0.788 38 H 0.106 0.894 39 H 0.145 0.855 40 H 0.127 0.873 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.039 0.961 45 H 0.064 0.936 46 H 0.027 0.973 47 H 0.054 0.946 48 H 0.019 0.981 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -25.800 -7.528 -6.288 27.601 hybrid contribution 1.851 0.349 -0.734 2.022 sum -23.949 -7.179 -7.022 25.969 Atomic orbital electron populations 1.21845 0.89931 1.03553 1.04197 1.20121 0.98731 0.95648 0.88675 1.21825 1.00047 0.94087 1.04196 1.26813 0.93713 0.88048 0.98319 1.74845 1.21960 1.21213 0.99817 1.78551 1.08076 0.99845 1.23675 1.78782 1.19072 1.22513 0.88693 1.48129 1.33138 1.21271 1.06765 1.22494 0.94467 0.99193 0.86499 1.20597 0.87100 0.83237 0.79808 1.90847 1.69795 1.31572 1.53454 1.48631 1.23157 1.31094 1.30426 1.22898 1.02481 0.86943 0.91068 1.22840 0.93843 1.02991 0.96223 1.22469 0.98523 0.98365 0.95490 1.22157 0.82999 0.97328 0.95100 0.93692 1.21072 0.86361 0.96122 0.94215 1.44119 1.17696 1.03486 1.68407 1.20717 0.95667 0.82913 0.97837 1.19675 0.91209 0.96657 1.29902 0.89438 1.25754 0.98951 0.98875 1.02511 1.70312 1.20047 1.23608 1.45610 0.85113 0.78410 0.78173 0.78253 1.17974 1.22141 1.22703 0.92655 0.88096 0.91233 0.86071 0.94975 0.87897 0.92399 0.80899 0.78819 0.89416 0.85465 0.87333 0.89432 0.91517 0.91649 0.96076 0.93618 0.97274 0.94590 0.98140 0.94645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.18 71.98 0.66 -0.54 16 2 C -0.01 -0.14 3.26 -11.54 -0.04 -0.18 16 3 C -0.14 -2.42 9.18 71.98 0.66 -1.76 16 4 C 0.21 4.84 6.64 138.13 0.92 5.75 16 5 N -0.33 -10.09 12.36 -50.45 -0.62 -10.72 16 6 N -0.11 -3.72 13.43 37.01 0.50 -3.22 16 7 N -0.10 -3.25 13.29 37.02 0.49 -2.76 16 8 N -0.29 -6.77 2.83 -341.95 -0.97 -7.74 16 9 C 0.10 1.26 5.51 85.63 0.47 1.73 16 10 C 0.51 12.33 7.73 87.66 0.68 13.01 16 11 O -0.58 -21.94 15.23 -3.03 -0.05 -21.99 16 12 N -0.60 -13.10 3.07 -788.09 -2.42 -15.51 16 13 C 0.09 0.87 6.73 86.85 0.58 1.45 16 14 C -0.12 -1.55 7.08 31.99 0.23 -1.32 16 15 C -0.11 -2.89 5.70 31.78 0.18 -2.71 16 16 C 0.13 4.15 3.14 45.33 0.14 4.30 16 17 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 18 C 0.15 6.41 5.07 86.38 0.44 6.85 16 19 N -0.61 -31.65 2.85 -726.94 -2.07 -33.72 16 20 C 0.17 9.45 9.07 127.77 1.16 10.61 16 21 C -0.24 -13.07 8.98 84.03 0.75 -12.31 16 22 H 0.09 4.33 6.89 -2.91 -0.02 4.31 16 23 C -0.07 -3.78 5.27 84.86 0.45 -3.34 16 24 N -0.95 -57.41 10.15 21.65 0.22 -57.19 16 25 Si 0.97 44.40 29.58 68.60 2.03 46.43 16 26 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 27 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 28 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.12 0.88 6.85 -2.39 -0.02 0.86 16 33 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.17 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.19 0.18 6.93 -2.39 -0.02 0.16 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.13 -0.02 7.47 -2.38 -0.02 -0.03 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.96 6.70 -2.39 -0.02 1.94 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.02 1.02 6.47 -2.39 -0.02 1.00 16 45 H 0.05 1.92 7.87 -2.39 -0.02 1.90 16 46 H 0.01 0.44 7.89 -2.39 -0.02 0.42 16 47 H 0.04 2.19 6.34 -2.39 -0.02 2.17 16 48 H 0.00 0.00 7.96 -2.38 -0.02 -0.02 16 49 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -88.17 394.04 5.34 -82.82 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 0.94 Total: 2.06 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 7.29 Total: 21.53 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -4.87 Total: -130.85 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -88.17 5.34 -82.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275150752.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.699 kcal (2) G-P(sol) polarization free energy of solvation -88.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds