Wall clock time and date at job start Tue Mar 31 2020 19:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47296 * 2 1 4 4 C 1.52995 * 109.47116 * 239.99586 * 2 1 3 5 5 N 1.46502 * 109.46689 * 119.99651 * 2 1 3 6 6 N 1.28777 * 125.45031 * 359.97438 * 5 2 1 7 7 N 1.28998 * 108.73006 * 180.02562 * 6 5 2 8 8 C 1.33319 * 107.34734 * 359.97438 * 7 6 5 9 9 C 1.50701 * 126.54504 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47355 * 90.02910 * 9 8 7 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 9 14 14 C 1.53781 * 113.61116 * 253.85697 * 13 12 10 15 15 C 1.54051 * 86.98683 * 270.83631 * 14 13 12 16 16 C 1.52994 * 113.62435 * 220.02060 * 15 14 13 17 17 N 1.46507 * 109.47140 * 272.49936 * 16 15 14 18 18 C 1.36938 * 119.99592 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00280 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99352 * 179.97438 * 18 17 16 21 21 N 1.31609 * 120.00114 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99697 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47148 * 89.99783 * 22 20 18 24 24 H 1.48496 * 109.46810 * 210.00217 * 22 20 18 25 25 H 1.48504 * 109.46675 * 330.00029 * 22 20 18 26 26 C 1.53777 * 87.07809 * 334.57018 * 15 14 13 27 27 N 1.28879 * 125.44623 * 180.31093 * 5 2 1 28 28 H 1.09001 * 109.46995 * 300.00375 * 1 2 3 29 29 H 1.09000 * 109.46725 * 60.00075 * 1 2 3 30 30 H 1.08995 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47495 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47172 * 299.99651 * 3 2 1 33 33 H 1.09007 * 109.46972 * 59.99884 * 3 2 1 34 34 H 1.08995 * 109.47661 * 300.00498 * 4 2 1 35 35 H 1.09000 * 109.47047 * 60.00536 * 4 2 1 36 36 H 1.09008 * 109.46967 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.47477 * 330.02755 * 9 8 7 38 38 H 1.09002 * 109.47412 * 210.03014 * 9 8 7 39 39 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 40 40 H 1.09001 * 112.85160 * 25.05344 * 13 12 10 41 41 H 1.08993 * 113.61427 * 25.43567 * 14 13 12 42 42 H 1.09003 * 113.61197 * 156.33752 * 14 13 12 43 43 H 1.09004 * 113.68470 * 89.12632 * 15 14 13 44 44 H 1.08998 * 109.46830 * 32.49335 * 16 15 14 45 45 H 1.08994 * 109.47607 * 152.49714 * 16 15 14 46 46 H 0.97001 * 119.99780 * 0.02562 * 17 16 15 47 47 H 0.97010 * 120.00017 * 180.02562 * 21 20 18 48 48 H 1.08996 * 113.61421 * 270.87692 * 26 15 14 49 49 H 1.09008 * 113.61672 * 139.97160 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1963 6 7 1.2781 -1.2170 2.1092 7 7 2.0397 -1.7372 3.0110 8 6 3.3015 -1.5227 2.6378 9 6 4.5418 -1.9501 3.3795 10 6 4.9552 -3.3236 2.9172 11 8 4.3063 -3.8989 2.0693 12 7 6.0455 -3.9131 3.4468 13 6 6.4508 -5.2457 2.9930 14 6 6.1543 -6.3596 4.0109 15 6 7.5487 -6.0786 4.6023 16 6 8.3075 -7.3427 5.0109 17 7 7.9521 -7.7028 6.3858 18 6 8.5113 -8.8076 6.9705 19 1 9.2139 -9.4138 6.4180 20 6 8.1749 -9.1484 8.2735 21 7 7.3191 -8.4094 8.9469 22 14 8.9371 -10.6560 9.0709 23 1 10.1942 -10.2692 9.7602 24 1 7.9866 -11.2274 10.0585 25 1 9.2363 -11.6698 8.0278 26 6 7.9429 -5.5448 3.2151 27 7 3.2572 -0.8630 1.5064 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 4.3353 -1.9738 4.4495 38 1 5.3464 -1.2423 3.1803 39 1 6.5642 -3.4531 4.1252 40 1 6.1055 -5.4727 1.9844 41 1 5.3348 -6.1239 4.6898 42 1 6.0619 -7.3484 3.5615 43 1 7.5486 -5.3150 5.3802 44 1 8.0399 -8.1596 4.3407 45 1 9.3800 -7.1587 4.9492 46 1 7.3202 -7.1589 6.8817 47 1 7.0843 -8.6474 9.8576 48 1 8.3385 -6.3111 2.5486 49 1 8.5664 -4.6514 3.2520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275232800.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:57 Heat of formation + Delta-G solvation = 116.011671 kcal Electronic energy + Delta-G solvation = -28317.798713 eV Core-core repulsion = 24319.075557 eV Total energy + Delta-G solvation = -3998.723156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.51860 -40.22804 -38.45151 -37.94389 -34.52591 -33.77859 -33.44162 -33.06170 -30.89390 -29.69483 -28.13167 -28.00914 -26.71175 -25.48061 -24.81708 -23.64324 -22.79924 -21.41417 -21.01533 -20.73061 -19.08003 -17.78931 -17.40821 -17.06384 -16.82282 -16.12750 -15.44946 -15.17382 -14.78514 -14.74421 -14.54305 -14.37685 -13.99597 -13.84303 -13.65297 -13.51652 -13.31192 -13.06800 -12.91353 -12.85573 -12.52589 -12.42750 -12.28958 -12.16696 -12.06908 -12.03971 -11.62416 -11.58288 -11.06715 -11.01161 -10.99860 -10.80772 -10.51916 -10.42733 -10.32658 -10.06173 -9.90545 -9.79731 -9.58284 -9.02020 -8.81477 -6.86960 -5.72823 -3.00905 1.09291 1.59438 1.96047 2.48856 3.04660 3.45972 3.50955 3.52909 3.54686 3.83190 3.96418 4.06695 4.30059 4.57329 4.60802 4.70633 4.80993 4.84171 4.85215 4.90463 4.93229 5.00601 5.05598 5.08640 5.13013 5.16357 5.21309 5.36651 5.43443 5.50728 5.56281 5.61340 5.72536 5.75505 5.87751 5.96121 6.03174 6.04744 6.13558 6.26979 6.33796 6.45500 6.64683 6.81232 6.96627 7.39137 7.73282 8.09979 8.24259 8.46382 9.57374 10.16796 10.51230 11.50111 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.028494 B = 0.001708 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.420744 B =16385.846760 C =16853.834807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 C -0.157 4.157 4 C -0.159 4.159 5 N -0.131 5.131 6 N -0.062 5.062 7 N -0.274 5.274 8 C 0.186 3.814 9 C -0.045 4.045 10 C 0.524 3.476 11 O -0.533 6.533 12 N -0.706 5.706 13 C 0.117 3.883 14 C -0.139 4.139 15 C -0.113 4.113 16 C 0.162 3.838 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.137 4.137 27 N -0.296 5.296 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.404 0.596 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.020 0.980 45 H 0.018 0.982 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.094 0.906 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.692 23.961 -21.533 33.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.098 3.902 3 C -0.216 4.216 4 C -0.217 4.217 5 N -0.044 5.044 6 N -0.054 5.054 7 N -0.145 5.145 8 C -0.097 4.097 9 C -0.088 4.088 10 C 0.308 3.692 11 O -0.409 6.409 12 N -0.357 5.357 13 C 0.012 3.988 14 C -0.177 4.177 15 C -0.131 4.131 16 C 0.034 3.966 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.176 4.176 27 N -0.147 5.147 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.238 0.762 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.037 0.963 45 H 0.036 0.964 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.113 0.887 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.744 23.482 -22.283 34.108 hybrid contribution 0.984 -0.599 1.218 1.676 sum -9.760 22.883 -21.065 32.598 Atomic orbital electron populations 1.22091 0.90090 1.04728 1.04204 1.21376 0.96455 0.92635 0.79745 1.22225 1.03268 0.92124 1.03977 1.22232 1.03337 1.01238 0.94923 1.50415 1.01112 1.34873 1.18019 1.78910 1.21932 1.09115 0.95460 1.75838 1.00717 1.17843 1.20094 1.24560 0.94847 0.98560 0.91770 1.19864 0.92084 0.95708 1.01149 1.20106 0.80532 0.86833 0.81747 1.90738 1.52758 1.65348 1.32038 1.45575 1.28628 1.18556 1.42931 1.21942 0.95928 0.81978 0.98986 1.23457 0.97985 0.98367 0.97931 1.22808 0.95780 0.99061 0.95499 1.20639 0.95715 0.92400 0.87817 1.42347 1.53388 1.31731 1.10098 1.19248 1.19655 1.02403 0.95731 0.91254 1.24738 0.99958 0.99308 0.97092 1.69658 1.37203 1.40169 1.11202 0.86193 0.78281 0.82647 0.79104 1.21771 1.21794 1.20804 1.23305 0.94596 1.01331 0.98334 1.74508 1.03361 1.20556 1.16225 0.90596 0.89288 0.90524 0.90433 0.89200 0.91424 0.91263 0.89237 0.90425 0.85326 0.85876 0.76159 0.88472 0.91184 0.89178 0.89328 0.96256 0.96423 0.78316 0.93566 0.88739 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 7.91 37.16 0.29 -0.46 16 2 C 0.18 1.17 1.30 -131.82 -0.17 1.00 16 3 C -0.16 -0.70 8.66 37.16 0.32 -0.38 16 4 C -0.16 -0.90 8.67 37.15 0.32 -0.58 16 5 N -0.13 -1.42 3.73 0.48 0.00 -1.42 16 6 N -0.06 -0.81 12.24 60.35 0.74 -0.07 16 7 N -0.27 -4.00 12.50 32.45 0.41 -3.59 16 8 C 0.19 2.36 6.86 -156.63 -1.07 1.29 16 9 C -0.05 -0.42 6.33 -29.03 -0.18 -0.61 16 10 C 0.52 6.55 7.82 -10.98 -0.09 6.46 16 11 O -0.53 -9.11 15.65 5.55 0.09 -9.03 16 12 N -0.71 -7.66 5.26 -53.01 -0.28 -7.94 16 13 C 0.12 1.47 4.30 -67.12 -0.29 1.18 16 14 C -0.14 -2.09 7.45 -25.78 -0.19 -2.29 16 15 C -0.11 -1.72 3.64 -89.67 -0.33 -2.05 16 16 C 0.16 3.22 6.10 -4.04 -0.02 3.20 16 17 N -0.73 -18.69 5.60 -59.91 -0.34 -19.02 16 18 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.58 13.06 55.49 0.72 -27.85 16 22 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.14 -1.62 7.38 -25.92 -0.19 -1.81 16 27 N -0.30 -3.57 11.83 32.47 0.38 -3.18 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.40 3.28 8.70 -40.82 -0.36 2.92 16 40 H 0.10 1.33 7.50 -51.93 -0.39 0.94 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 47 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 49 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 408.64 15.07 6.16 6.16 Total: -1.00 -37.59 408.64 -7.17 -44.76 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.18 Total: 6.06 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -1.85 Total: -2.53 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: 1.64 Total: -63.09 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.59 -7.17 -44.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275232800.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.767 kcal (2) G-P(sol) polarization free energy of solvation -37.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds