Wall clock time and date at job start Tue Mar 31 2020 19:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47296 * 2 1 4 4 C 1.52995 * 109.47116 * 239.99586 * 2 1 3 5 5 N 1.46502 * 109.46689 * 119.99651 * 2 1 3 6 6 N 1.28777 * 125.45031 * 359.97438 * 5 2 1 7 7 N 1.28998 * 108.73006 * 180.02562 * 6 5 2 8 8 C 1.33319 * 107.34734 * 359.97438 * 7 6 5 9 9 C 1.50701 * 126.54504 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47355 * 90.02910 * 9 8 7 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 9 14 14 C 1.53781 * 113.61116 * 253.85697 * 13 12 10 15 15 C 1.54051 * 86.98683 * 270.83631 * 14 13 12 16 16 C 1.52994 * 113.62435 * 220.02060 * 15 14 13 17 17 N 1.46507 * 109.47140 * 272.49936 * 16 15 14 18 18 C 1.36938 * 119.99592 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00280 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99352 * 179.97438 * 18 17 16 21 21 N 1.31609 * 120.00114 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99697 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47148 * 89.99783 * 22 20 18 24 24 H 1.48496 * 109.46810 * 210.00217 * 22 20 18 25 25 H 1.48504 * 109.46675 * 330.00029 * 22 20 18 26 26 C 1.53777 * 87.07809 * 334.57018 * 15 14 13 27 27 N 1.28879 * 125.44623 * 180.31093 * 5 2 1 28 28 H 1.09001 * 109.46995 * 300.00375 * 1 2 3 29 29 H 1.09000 * 109.46725 * 60.00075 * 1 2 3 30 30 H 1.08995 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47495 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47172 * 299.99651 * 3 2 1 33 33 H 1.09007 * 109.46972 * 59.99884 * 3 2 1 34 34 H 1.08995 * 109.47661 * 300.00498 * 4 2 1 35 35 H 1.09000 * 109.47047 * 60.00536 * 4 2 1 36 36 H 1.09008 * 109.46967 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.47477 * 330.02755 * 9 8 7 38 38 H 1.09002 * 109.47412 * 210.03014 * 9 8 7 39 39 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 40 40 H 1.09001 * 112.85160 * 25.05344 * 13 12 10 41 41 H 1.08993 * 113.61427 * 25.43567 * 14 13 12 42 42 H 1.09003 * 113.61197 * 156.33752 * 14 13 12 43 43 H 1.09004 * 113.68470 * 89.12632 * 15 14 13 44 44 H 1.08998 * 109.46830 * 32.49335 * 16 15 14 45 45 H 1.08994 * 109.47607 * 152.49714 * 16 15 14 46 46 H 0.97001 * 119.99780 * 0.02562 * 17 16 15 47 47 H 0.97010 * 120.00017 * 180.02562 * 21 20 18 48 48 H 1.08996 * 113.61421 * 270.87692 * 26 15 14 49 49 H 1.09008 * 113.61672 * 139.97160 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1963 6 7 1.2781 -1.2170 2.1092 7 7 2.0397 -1.7372 3.0110 8 6 3.3015 -1.5227 2.6378 9 6 4.5418 -1.9501 3.3795 10 6 4.9552 -3.3236 2.9172 11 8 4.3063 -3.8989 2.0693 12 7 6.0455 -3.9131 3.4468 13 6 6.4508 -5.2457 2.9930 14 6 6.1543 -6.3596 4.0109 15 6 7.5487 -6.0786 4.6023 16 6 8.3075 -7.3427 5.0109 17 7 7.9521 -7.7028 6.3858 18 6 8.5113 -8.8076 6.9705 19 1 9.2139 -9.4138 6.4180 20 6 8.1749 -9.1484 8.2735 21 7 7.3191 -8.4094 8.9469 22 14 8.9371 -10.6560 9.0709 23 1 10.1942 -10.2692 9.7602 24 1 7.9866 -11.2274 10.0585 25 1 9.2363 -11.6698 8.0278 26 6 7.9429 -5.5448 3.2151 27 7 3.2572 -0.8630 1.5064 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 4.3353 -1.9738 4.4495 38 1 5.3464 -1.2423 3.1803 39 1 6.5642 -3.4531 4.1252 40 1 6.1055 -5.4727 1.9844 41 1 5.3348 -6.1239 4.6898 42 1 6.0619 -7.3484 3.5615 43 1 7.5486 -5.3150 5.3802 44 1 8.0399 -8.1596 4.3407 45 1 9.3800 -7.1587 4.9492 46 1 7.3202 -7.1589 6.8817 47 1 7.0843 -8.6474 9.8576 48 1 8.3385 -6.3111 2.5486 49 1 8.5664 -4.6514 3.2520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275232800.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:56 Heat of formation + Delta-G solvation = 88.212823 kcal Electronic energy + Delta-G solvation = -28319.004162 eV Core-core repulsion = 24319.075557 eV Total energy + Delta-G solvation = -3999.928604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.39929 -41.29127 -39.55151 -38.57154 -36.33201 -34.71472 -34.46659 -34.10375 -32.78638 -30.58842 -28.56016 -28.51970 -28.25310 -26.61032 -25.65585 -25.30027 -23.96671 -22.86349 -21.88950 -21.51201 -20.30799 -19.05794 -18.67874 -18.02802 -17.78572 -17.12233 -16.72676 -16.40862 -16.02847 -15.73193 -15.40963 -15.24936 -15.17164 -15.07474 -14.82662 -14.62710 -14.49480 -14.05627 -13.69350 -13.44845 -13.43409 -13.23880 -13.22079 -13.09322 -12.90081 -12.85976 -12.83678 -12.67142 -12.57103 -12.17572 -12.16252 -11.95691 -11.91867 -11.87317 -11.73026 -11.38516 -11.33563 -11.14311 -10.88319 -10.82105 -10.05888 -8.96240 -7.93966 -5.22007 0.20643 0.91697 1.03867 1.47393 1.49303 1.52615 1.57698 2.14393 2.56986 2.80152 3.15679 3.38974 3.51864 3.58351 3.60929 3.61810 3.66338 3.75742 3.96420 3.97389 4.20319 4.35380 4.40338 4.45684 4.51541 4.52569 4.58332 4.60045 4.67978 4.71188 4.72467 4.76209 4.79607 4.86680 4.93163 4.94492 5.01293 5.01389 5.10938 5.17392 5.21150 5.29292 5.35039 5.38189 5.50344 5.68976 6.28852 6.50355 7.18793 7.32582 7.34861 8.13484 8.35643 9.29549 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.028494 B = 0.001708 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.420744 B =16385.846760 C =16853.834807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 C -0.151 4.151 4 C -0.155 4.155 5 N -0.119 5.119 6 N -0.080 5.080 7 N -0.313 5.313 8 C 0.173 3.827 9 C -0.040 4.040 10 C 0.523 3.477 11 O -0.585 6.585 12 N -0.693 5.693 13 C 0.127 3.873 14 C -0.146 4.146 15 C -0.109 4.109 16 C 0.158 3.842 17 N -0.745 5.745 18 C -0.246 4.246 19 H 0.075 0.925 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.973 3.027 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.271 1.271 26 C -0.113 4.113 27 N -0.302 5.302 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.127 0.873 36 H 0.065 0.935 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.420 0.580 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.017 0.983 45 H 0.024 0.976 46 H 0.373 0.627 47 H 0.251 0.749 48 H 0.104 0.896 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.503 25.606 -23.090 35.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.082 3.918 3 C -0.209 4.209 4 C -0.213 4.213 5 N -0.035 5.035 6 N -0.072 5.072 7 N -0.183 5.183 8 C -0.110 4.110 9 C -0.082 4.082 10 C 0.309 3.691 11 O -0.464 6.464 12 N -0.345 5.345 13 C 0.021 3.979 14 C -0.185 4.185 15 C -0.128 4.128 16 C 0.032 3.968 17 N -0.387 5.387 18 C -0.378 4.378 19 H 0.093 0.907 20 C -0.270 4.270 21 N -0.620 5.620 22 Si 0.802 3.198 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.196 1.196 26 C -0.152 4.152 27 N -0.153 5.153 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.143 0.857 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.145 0.855 36 H 0.084 0.916 37 H 0.168 0.832 38 H 0.180 0.820 39 H 0.258 0.742 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.035 0.965 45 H 0.042 0.958 46 H 0.205 0.795 47 H 0.059 0.941 48 H 0.122 0.878 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.519 25.144 -23.853 35.942 hybrid contribution 0.588 -1.086 1.576 2.002 sum -8.931 24.058 -22.278 33.983 Atomic orbital electron populations 1.22138 0.88874 1.04103 1.05670 1.22013 0.97575 0.93643 0.78552 1.22244 1.02712 0.90578 1.05411 1.22257 1.02520 1.00545 0.95982 1.50974 1.00711 1.33571 1.18232 1.78821 1.22336 1.09932 0.96114 1.75782 1.01819 1.19248 1.21408 1.25140 0.95273 0.98459 0.92118 1.20058 0.92012 0.94348 1.01827 1.20629 0.79973 0.87651 0.80805 1.90720 1.54383 1.66839 1.34483 1.45467 1.28343 1.17785 1.42877 1.21733 0.96523 0.81952 0.97660 1.23474 0.97357 0.99129 0.98515 1.22738 0.95394 0.97186 0.97474 1.20841 0.96534 0.94404 0.84998 1.42581 1.53037 1.31018 1.12101 1.19673 1.19150 1.03004 0.96015 0.90735 1.25573 1.01002 1.02470 0.97914 1.69816 1.38940 1.42002 1.11262 0.85140 0.77237 0.79349 0.78042 1.21182 1.22306 1.19555 1.23205 0.94199 1.02402 0.95351 1.74478 1.03975 1.20777 1.16082 0.91246 0.85645 0.92184 0.91257 0.85733 0.91972 0.93243 0.85477 0.91634 0.83156 0.82031 0.74207 0.89329 0.93125 0.90126 0.89106 0.96499 0.95843 0.79515 0.94069 0.87796 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.91 71.98 0.57 -0.73 16 2 C 0.16 1.94 1.30 3.60 0.00 1.94 16 3 C -0.15 -1.05 8.66 71.98 0.62 -0.43 16 4 C -0.15 -1.58 8.67 71.98 0.62 -0.95 16 5 N -0.12 -2.60 3.73 -152.40 -0.57 -3.17 16 6 N -0.08 -2.17 12.24 37.02 0.45 -1.72 16 7 N -0.31 -9.38 12.50 -51.26 -0.64 -10.02 16 8 C 0.17 4.38 6.86 138.55 0.95 5.33 16 9 C -0.04 -0.70 6.33 29.10 0.18 -0.51 16 10 C 0.52 12.66 7.82 87.66 0.69 13.35 16 11 O -0.58 -20.28 15.65 -3.04 -0.05 -20.33 16 12 N -0.69 -13.88 5.26 -440.03 -2.32 -16.20 16 13 C 0.13 3.05 4.30 45.52 0.20 3.25 16 14 C -0.15 -4.41 7.45 31.21 0.23 -4.18 16 15 C -0.11 -3.21 3.64 -10.18 -0.04 -3.24 16 16 C 0.16 6.19 6.10 86.38 0.53 6.71 16 17 N -0.74 -38.22 5.60 -343.45 -1.92 -40.15 16 18 C -0.25 -14.00 9.99 84.03 0.84 -13.17 16 19 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 21 N -0.97 -60.19 13.06 21.65 0.28 -59.90 16 22 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 26 C -0.11 -2.37 7.38 31.12 0.23 -2.14 16 27 N -0.30 -7.21 11.83 -51.20 -0.61 -7.82 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.15 1.92 8.14 -2.39 -0.02 1.91 16 38 H 0.16 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.42 5.69 8.70 -92.71 -0.81 4.88 16 40 H 0.09 2.37 7.50 -2.39 -0.02 2.35 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.08 2.56 7.90 -2.39 -0.02 2.54 16 43 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 44 H 0.02 0.68 7.85 -2.39 -0.02 0.66 16 45 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.37 20.36 7.67 -92.71 -0.71 19.65 16 47 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 48 H 0.10 2.05 8.10 -2.39 -0.02 2.03 16 49 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -84.48 408.64 2.20 -82.28 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.56 Total: 27.05 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 6.10 Total: 1.18 kcal Atomic # 7 Polarization: -133.66 SS G_CDS: -5.32 Total: -138.98 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -84.48 2.20 -82.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275232800.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.489 kcal (2) G-P(sol) polarization free energy of solvation -84.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds