Wall clock time and date at job start Tue Mar 31 2020 19:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47345 * 275.72995 * 3 2 1 5 5 H 1.48504 * 109.47064 * 35.73485 * 3 2 1 6 6 H 1.48507 * 109.46803 * 155.73000 * 3 2 1 7 7 C 1.38809 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99867 * 337.92356 * 7 2 1 9 9 N 1.36937 * 120.00242 * 157.93051 * 7 2 1 10 10 C 1.46498 * 119.99958 * 322.69518 * 9 7 2 11 11 C 1.53005 * 109.46976 * 264.05073 * 10 9 7 12 12 N 1.46498 * 109.46976 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99591 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00329 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99756 * 179.97438 * 13 12 11 16 16 N 1.46496 * 109.47324 * 179.97438 * 15 13 12 17 17 N 1.28886 * 125.44456 * 90.00121 * 16 15 13 18 18 C 1.31047 * 107.91103 * 180.02562 * 17 16 15 19 19 N 1.33311 * 106.90294 * 359.97438 * 18 17 16 20 20 N 1.28783 * 125.45344 * 269.70201 * 16 15 13 21 21 C 1.46500 * 120.00324 * 142.69162 * 9 7 2 22 22 C 1.50476 * 109.62609 * 300.96824 * 21 9 7 23 23 C 1.54073 * 112.49554 * 213.85467 * 22 21 9 24 24 C 1.54068 * 112.81740 * 318.27805 * 23 22 21 25 25 C 1.50474 * 112.49753 * 318.28783 * 24 23 22 26 26 C 1.54241 * 108.51436 * 94.15416 * 25 24 23 27 27 C 1.45535 * 112.40721 * 280.00187 * 26 25 24 28 28 H 0.96994 * 119.99966 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47533 * 24.04697 * 10 9 7 30 30 H 1.08997 * 109.47525 * 144.05320 * 10 9 7 31 31 H 1.08996 * 109.47408 * 300.00317 * 11 10 9 32 32 H 1.08998 * 109.47162 * 60.00191 * 11 10 9 33 33 H 0.97002 * 120.00157 * 359.97438 * 12 11 10 34 34 H 1.08996 * 109.47360 * 300.00163 * 15 13 12 35 35 H 1.09005 * 109.47425 * 59.99636 * 15 13 12 36 36 H 1.08006 * 126.54416 * 179.97438 * 18 17 16 37 37 H 1.08994 * 109.62760 * 180.38394 * 21 9 7 38 38 H 1.08998 * 108.87521 * 334.62751 * 22 21 9 39 39 H 1.08997 * 108.88099 * 93.17999 * 22 21 9 40 40 H 1.09003 * 108.81297 * 197.42273 * 23 22 21 41 41 H 1.08996 * 108.81312 * 79.14244 * 23 22 21 42 42 H 1.09001 * 108.87804 * 197.50718 * 24 23 22 43 43 H 1.09002 * 108.87389 * 79.06364 * 24 23 22 44 44 H 1.08998 * 109.62478 * 213.86426 * 25 24 23 45 45 H 1.08994 * 109.63126 * 334.24924 * 25 24 23 46 46 H 1.09001 * 108.89284 * 40.75143 * 26 25 24 47 47 H 1.08997 * 108.89198 * 159.24380 * 26 25 24 48 48 H 1.09008 * 108.89416 * 182.68918 * 27 26 25 49 49 H 1.09007 * 108.89800 * 301.27649 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3766 2.1164 -1.3930 5 1 1.5134 2.6147 0.8177 6 1 3.6030 1.4083 0.5755 7 6 2.0103 -1.2021 -0.0005 8 1 1.5297 -2.1033 0.3506 9 7 3.3044 -1.2453 -0.4461 10 6 3.7144 -0.4218 -1.5863 11 6 3.6524 -1.2568 -2.8669 12 7 4.0619 -0.4331 -4.0071 13 6 4.0842 -0.9618 -5.2468 14 8 3.7658 -2.1194 -5.4182 15 6 4.5048 -0.1144 -6.4198 16 7 4.4455 -0.9138 -7.6460 17 7 3.4180 -1.0264 -8.4159 18 6 3.7423 -1.8198 -9.4072 19 7 5.0090 -2.1865 -9.2118 20 7 5.4133 -1.6121 -8.1299 21 6 4.2790 -2.1150 0.2173 22 6 4.3906 -1.7340 1.6688 23 6 5.8166 -1.9246 2.2203 24 6 6.4759 -3.2293 1.7337 25 6 5.5238 -4.3944 1.7444 26 6 4.8951 -4.5261 0.3421 27 6 3.8085 -3.5814 0.1303 28 1 -0.4850 0.8400 0.0004 29 1 3.0441 0.4328 -1.6770 30 1 4.7341 -0.0690 -1.4317 31 1 4.3228 -2.1115 -2.7763 32 1 2.6328 -1.6096 -3.0216 33 1 4.3162 0.4929 -3.8701 34 1 3.8340 0.7400 -6.5099 35 1 5.5244 0.2390 -6.2658 36 1 3.1049 -2.1194 -10.2261 37 1 5.2501 -2.0128 -0.2668 38 1 4.1057 -0.6880 1.7817 39 1 3.7043 -2.3507 2.2491 40 1 5.7734 -1.9376 3.3094 41 1 6.4310 -1.0814 1.9050 42 1 7.3222 -3.4595 2.3810 43 1 6.8415 -3.0819 0.7175 44 1 6.0656 -5.3077 1.9901 45 1 4.7424 -4.2220 2.4844 46 1 5.6662 -4.3511 -0.4082 47 1 4.5109 -5.5389 0.2212 48 1 3.3764 -3.7555 -0.8552 49 1 3.0416 -3.7501 0.8864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277375332.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:32 Heat of formation + Delta-G solvation = 112.436675 kcal Electronic energy + Delta-G solvation = -29855.300065 eV Core-core repulsion = 25856.421885 eV Total energy + Delta-G solvation = -3998.878179 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.43547 -39.81357 -38.78054 -36.13197 -35.06844 -34.38956 -33.18759 -32.02649 -31.87225 -30.86772 -29.58688 -27.56902 -24.77843 -24.11680 -24.07560 -23.87249 -22.77177 -21.35095 -20.80578 -20.01219 -18.72259 -18.26100 -18.07151 -16.60574 -16.20084 -16.12216 -15.87003 -15.62325 -15.18334 -14.87780 -14.46002 -14.24751 -14.07458 -13.84046 -13.76828 -13.63991 -13.16382 -12.80930 -12.59092 -12.52712 -12.15604 -12.07795 -11.97974 -11.71992 -11.55386 -11.26964 -11.12598 -11.08999 -10.76387 -10.74352 -10.43682 -10.41541 -10.30660 -10.08139 -10.06842 -9.96663 -9.88405 -9.56664 -9.51939 -8.99736 -8.62408 -6.98415 -6.09464 -3.52379 1.05553 1.61718 2.14501 2.34860 3.02260 3.13879 3.35503 3.38047 3.90943 4.23750 4.32174 4.39560 4.46206 4.74203 4.79752 4.98098 5.15524 5.17388 5.25066 5.53972 5.56879 5.58435 5.60783 5.61897 5.67388 5.68886 5.78343 5.90911 5.96057 5.97916 6.05359 6.11458 6.25982 6.30163 6.38983 6.44592 6.47139 6.53242 6.56033 6.60966 6.68271 6.84947 6.87472 7.06416 7.13348 7.35046 7.93667 8.01940 8.23610 8.32263 8.87194 9.60007 9.98119 11.05898 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.003213 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.716679 B = 8713.062638 C =10364.061410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.037 3.963 3 Si 0.873 3.127 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.264 4.264 8 H 0.082 0.918 9 N -0.594 5.594 10 C 0.127 3.873 11 C 0.099 3.901 12 N -0.713 5.713 13 C 0.499 3.501 14 O -0.522 6.522 15 C 0.107 3.893 16 N -0.124 5.124 17 N -0.300 5.300 18 C 0.143 3.857 19 N -0.287 5.287 20 N -0.051 5.051 21 C 0.185 3.815 22 C -0.123 4.123 23 C -0.115 4.115 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.110 4.110 27 C -0.129 4.129 28 H 0.263 0.737 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.400 0.600 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.236 0.764 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.059 0.941 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.090 0.924 -7.238 14.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.164 4.164 3 Si 0.703 3.297 4 H -0.217 1.217 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.393 4.393 8 H 0.100 0.900 9 N -0.315 5.315 10 C 0.000 4.000 11 C -0.026 4.026 12 N -0.365 5.365 13 C 0.281 3.719 14 O -0.397 6.397 15 C -0.017 4.017 16 N -0.035 5.035 17 N -0.149 5.149 18 C -0.160 4.160 19 N -0.158 5.158 20 N -0.045 5.045 21 C 0.079 3.921 22 C -0.162 4.162 23 C -0.153 4.153 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.148 4.148 27 C -0.168 4.168 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.234 0.766 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.252 0.748 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.204 0.217 -6.905 14.023 hybrid contribution -0.182 1.425 -0.227 1.455 sum 12.022 1.643 -7.132 14.074 Atomic orbital electron populations 1.69869 1.06001 1.26721 1.51024 1.25490 0.95028 0.97616 0.98275 0.87013 0.80891 0.85004 0.76743 1.21709 1.22936 1.19118 1.18730 0.86011 0.94413 1.40131 0.90000 1.44154 1.08334 1.49640 1.29323 1.21416 0.98234 0.94134 0.86188 1.22518 1.01166 0.94666 0.84258 1.46004 1.67836 1.16000 1.06685 1.20160 0.79391 0.88190 0.84201 1.90822 1.47304 1.17066 1.84552 1.22083 1.08022 0.93299 0.78333 1.49490 1.05072 1.30744 1.18219 1.74736 1.14346 1.21614 1.04203 1.27341 0.93205 0.96276 0.99176 1.75859 1.11535 1.19598 1.08857 1.78976 1.15638 1.04581 1.05320 1.20084 0.90976 0.89355 0.91698 1.21781 0.94457 1.02584 0.97400 1.21927 0.97155 0.96502 0.99708 1.21334 0.97862 0.95101 1.01073 1.21338 0.98955 0.97281 0.97885 1.20458 0.98744 0.99231 0.96346 1.20886 0.97827 0.95867 1.02240 0.92661 0.91779 0.93935 0.91847 0.90419 0.76586 0.83651 0.83589 0.74815 0.92859 0.91401 0.92370 0.93005 0.93092 0.93203 0.92388 0.92851 0.91510 0.92929 0.93119 0.92243 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.81 13.97 55.49 0.78 -25.04 16 2 C 0.04 0.97 5.27 -17.43 -0.09 0.88 16 3 Si 0.87 20.05 25.00 -169.99 -4.25 15.80 16 4 H -0.29 -6.25 6.69 56.52 0.38 -5.87 16 5 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.26 -6.66 8.91 -15.06 -0.13 -6.80 16 8 H 0.08 2.29 7.53 -52.49 -0.40 1.90 16 9 N -0.59 -12.34 1.91 -166.36 -0.32 -12.65 16 10 C 0.13 2.33 4.34 -4.04 -0.02 2.31 16 11 C 0.10 1.69 5.99 -4.04 -0.02 1.66 16 12 N -0.71 -9.20 5.56 -60.29 -0.33 -9.54 16 13 C 0.50 6.81 7.90 -10.98 -0.09 6.72 16 14 O -0.52 -9.91 16.43 5.56 0.09 -9.82 16 15 C 0.11 0.97 7.08 -5.20 -0.04 0.94 16 16 N -0.12 -1.58 3.49 -11.72 -0.04 -1.62 16 17 N -0.30 -3.92 12.13 29.34 0.36 -3.57 16 18 C 0.14 1.64 13.26 -91.58 -1.21 0.43 16 19 N -0.29 -3.98 12.50 29.33 0.37 -3.61 16 20 N -0.05 -0.73 13.25 60.35 0.80 0.07 16 21 C 0.19 3.28 2.31 -68.54 -0.16 3.12 16 22 C -0.12 -2.13 4.46 -27.43 -0.12 -2.25 16 23 C -0.11 -1.58 5.86 -25.61 -0.15 -1.73 16 24 C -0.12 -1.43 5.31 -27.44 -0.15 -1.58 16 25 C -0.12 -1.48 5.60 -27.34 -0.15 -1.63 16 26 C -0.11 -1.54 5.26 -29.60 -0.16 -1.69 16 27 C -0.13 -2.20 4.20 -29.60 -0.12 -2.33 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.06 1.29 3.53 -51.93 -0.18 1.11 16 30 H 0.04 0.68 8.05 -51.93 -0.42 0.26 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 33 H 0.40 3.71 8.47 -40.82 -0.35 3.37 16 34 H 0.15 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.15 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.24 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.05 0.88 6.73 -51.93 -0.35 0.53 16 38 H 0.07 1.34 7.87 -51.93 -0.41 0.93 16 39 H 0.06 1.04 6.63 -51.93 -0.34 0.70 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.72 6.64 -51.93 -0.34 0.37 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.90 6.99 -51.93 -0.36 0.53 16 46 H 0.05 0.72 7.47 -51.93 -0.39 0.33 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.06 1.12 8.12 -51.92 -0.42 0.69 16 49 H 0.06 1.10 7.20 -51.93 -0.37 0.73 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -34.15 385.79 -7.08 -41.22 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.72 Total: 4.88 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.62 Total: -1.94 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 1.60 Total: -55.96 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.25 Total: 15.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.15 -7.08 -41.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277375332.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.661 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds