Wall clock time and date at job start Tue Mar 31 2020 19:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47345 * 275.72995 * 3 2 1 5 5 H 1.48504 * 109.47064 * 35.73485 * 3 2 1 6 6 H 1.48507 * 109.46803 * 155.73000 * 3 2 1 7 7 C 1.38809 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99867 * 337.92356 * 7 2 1 9 9 N 1.36937 * 120.00242 * 157.93051 * 7 2 1 10 10 C 1.46498 * 119.99958 * 322.69518 * 9 7 2 11 11 C 1.53005 * 109.46976 * 264.05073 * 10 9 7 12 12 N 1.46498 * 109.46976 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99591 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00329 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99756 * 179.97438 * 13 12 11 16 16 N 1.46496 * 109.47324 * 179.97438 * 15 13 12 17 17 N 1.28886 * 125.44456 * 90.00121 * 16 15 13 18 18 C 1.31047 * 107.91103 * 180.02562 * 17 16 15 19 19 N 1.33311 * 106.90294 * 359.97438 * 18 17 16 20 20 N 1.28783 * 125.45344 * 269.70201 * 16 15 13 21 21 C 1.46500 * 120.00324 * 142.69162 * 9 7 2 22 22 C 1.50476 * 109.62609 * 300.96824 * 21 9 7 23 23 C 1.54073 * 112.49554 * 213.85467 * 22 21 9 24 24 C 1.54068 * 112.81740 * 318.27805 * 23 22 21 25 25 C 1.50474 * 112.49753 * 318.28783 * 24 23 22 26 26 C 1.54241 * 108.51436 * 94.15416 * 25 24 23 27 27 C 1.45535 * 112.40721 * 280.00187 * 26 25 24 28 28 H 0.96994 * 119.99966 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47533 * 24.04697 * 10 9 7 30 30 H 1.08997 * 109.47525 * 144.05320 * 10 9 7 31 31 H 1.08996 * 109.47408 * 300.00317 * 11 10 9 32 32 H 1.08998 * 109.47162 * 60.00191 * 11 10 9 33 33 H 0.97002 * 120.00157 * 359.97438 * 12 11 10 34 34 H 1.08996 * 109.47360 * 300.00163 * 15 13 12 35 35 H 1.09005 * 109.47425 * 59.99636 * 15 13 12 36 36 H 1.08006 * 126.54416 * 179.97438 * 18 17 16 37 37 H 1.08994 * 109.62760 * 180.38394 * 21 9 7 38 38 H 1.08998 * 108.87521 * 334.62751 * 22 21 9 39 39 H 1.08997 * 108.88099 * 93.17999 * 22 21 9 40 40 H 1.09003 * 108.81297 * 197.42273 * 23 22 21 41 41 H 1.08996 * 108.81312 * 79.14244 * 23 22 21 42 42 H 1.09001 * 108.87804 * 197.50718 * 24 23 22 43 43 H 1.09002 * 108.87389 * 79.06364 * 24 23 22 44 44 H 1.08998 * 109.62478 * 213.86426 * 25 24 23 45 45 H 1.08994 * 109.63126 * 334.24924 * 25 24 23 46 46 H 1.09001 * 108.89284 * 40.75143 * 26 25 24 47 47 H 1.08997 * 108.89198 * 159.24380 * 26 25 24 48 48 H 1.09008 * 108.89416 * 182.68918 * 27 26 25 49 49 H 1.09007 * 108.89800 * 301.27649 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3766 2.1164 -1.3930 5 1 1.5134 2.6147 0.8177 6 1 3.6030 1.4083 0.5755 7 6 2.0103 -1.2021 -0.0005 8 1 1.5297 -2.1033 0.3506 9 7 3.3044 -1.2453 -0.4461 10 6 3.7144 -0.4218 -1.5863 11 6 3.6524 -1.2568 -2.8669 12 7 4.0619 -0.4331 -4.0071 13 6 4.0842 -0.9618 -5.2468 14 8 3.7658 -2.1194 -5.4182 15 6 4.5048 -0.1144 -6.4198 16 7 4.4455 -0.9138 -7.6460 17 7 3.4180 -1.0264 -8.4159 18 6 3.7423 -1.8198 -9.4072 19 7 5.0090 -2.1865 -9.2118 20 7 5.4133 -1.6121 -8.1299 21 6 4.2790 -2.1150 0.2173 22 6 4.3906 -1.7340 1.6688 23 6 5.8166 -1.9246 2.2203 24 6 6.4759 -3.2293 1.7337 25 6 5.5238 -4.3944 1.7444 26 6 4.8951 -4.5261 0.3421 27 6 3.8085 -3.5814 0.1303 28 1 -0.4850 0.8400 0.0004 29 1 3.0441 0.4328 -1.6770 30 1 4.7341 -0.0690 -1.4317 31 1 4.3228 -2.1115 -2.7763 32 1 2.6328 -1.6096 -3.0216 33 1 4.3162 0.4929 -3.8701 34 1 3.8340 0.7400 -6.5099 35 1 5.5244 0.2390 -6.2658 36 1 3.1049 -2.1194 -10.2261 37 1 5.2501 -2.0128 -0.2668 38 1 4.1057 -0.6880 1.7817 39 1 3.7043 -2.3507 2.2491 40 1 5.7734 -1.9376 3.3094 41 1 6.4310 -1.0814 1.9050 42 1 7.3222 -3.4595 2.3810 43 1 6.8415 -3.0819 0.7175 44 1 6.0656 -5.3077 1.9901 45 1 4.7424 -4.2220 2.4844 46 1 5.6662 -4.3511 -0.4082 47 1 4.5109 -5.5389 0.2212 48 1 3.3764 -3.7555 -0.8552 49 1 3.0416 -3.7501 0.8864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277375332.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:31 Heat of formation + Delta-G solvation = 88.136786 kcal Electronic energy + Delta-G solvation = -29856.353787 eV Core-core repulsion = 25856.421885 eV Total energy + Delta-G solvation = -3999.931902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.36075 -40.99151 -40.12720 -37.53359 -36.03726 -35.74476 -34.12872 -33.77632 -33.23234 -32.14206 -30.71113 -28.97257 -26.41616 -25.33908 -25.11129 -24.96968 -23.94567 -22.84734 -21.92505 -21.35583 -20.05055 -19.35537 -18.96716 -18.21852 -17.44402 -17.34773 -17.16389 -16.84875 -16.42539 -16.10435 -15.71999 -15.52534 -15.34221 -15.05775 -14.91250 -14.90029 -14.57250 -14.10573 -14.02817 -13.82093 -13.59991 -13.52545 -13.05253 -12.98519 -12.91494 -12.58435 -12.40834 -12.27887 -12.05491 -11.98241 -11.82748 -11.74721 -11.66511 -11.53599 -11.41347 -11.21217 -11.09273 -11.00466 -10.86163 -10.58776 -10.25682 -8.77537 -8.14664 -5.55127 0.08561 0.81923 1.24512 1.29435 1.30075 1.47043 1.57117 1.98120 2.45272 3.06262 3.17027 3.28885 3.46732 3.52253 3.80820 3.90132 3.93842 4.01412 4.10941 4.15166 4.19546 4.39018 4.43997 4.46100 4.53271 4.58711 4.69905 4.71144 4.73530 4.77626 4.89491 4.99943 5.02969 5.04760 5.12423 5.18874 5.23140 5.28673 5.37111 5.44872 5.45324 5.51477 5.61886 5.65385 5.66428 6.00587 6.26570 6.31450 6.98221 7.03913 7.29452 7.66986 8.05798 9.05379 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.003213 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.716679 B = 8713.062638 C =10364.061410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.024 4.024 3 Si 0.941 3.059 4 H -0.261 1.261 5 H -0.319 1.319 6 H -0.248 1.248 7 C -0.245 4.245 8 H 0.034 0.966 9 N -0.605 5.605 10 C 0.126 3.874 11 C 0.118 3.882 12 N -0.699 5.699 13 C 0.499 3.501 14 O -0.582 6.582 15 C 0.109 3.891 16 N -0.125 5.125 17 N -0.320 5.320 18 C 0.148 3.852 19 N -0.312 5.312 20 N -0.069 5.069 21 C 0.183 3.817 22 C -0.118 4.118 23 C -0.109 4.109 24 C -0.114 4.114 25 C -0.114 4.114 26 C -0.108 4.108 27 C -0.117 4.117 28 H 0.260 0.740 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.031 0.969 33 H 0.423 0.577 34 H 0.184 0.816 35 H 0.193 0.807 36 H 0.275 0.725 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.032 0.968 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.894 2.516 -8.103 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.220 4.220 3 Si 0.769 3.231 4 H -0.187 1.187 5 H -0.248 1.248 6 H -0.171 1.171 7 C -0.375 4.375 8 H 0.052 0.948 9 N -0.327 5.327 10 C 0.000 4.000 11 C -0.009 4.009 12 N -0.353 5.353 13 C 0.283 3.717 14 O -0.462 6.462 15 C -0.014 4.014 16 N -0.037 5.037 17 N -0.170 5.170 18 C -0.155 4.155 19 N -0.183 5.183 20 N -0.063 5.063 21 C 0.078 3.922 22 C -0.157 4.157 23 C -0.147 4.147 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.146 4.146 27 C -0.156 4.156 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.261 0.739 34 H 0.201 0.799 35 H 0.211 0.789 36 H 0.290 0.710 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.050 0.950 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 16.082 1.841 -7.786 17.962 hybrid contribution -1.435 0.792 0.036 1.640 sum 14.647 2.633 -7.750 16.779 Atomic orbital electron populations 1.70033 1.08105 1.27331 1.54327 1.26136 0.95552 1.01447 0.98852 0.85909 0.79714 0.79601 0.77919 1.18736 1.24822 1.17148 1.18459 0.87704 0.92720 1.38604 0.94820 1.44266 1.07279 1.50389 1.30723 1.21491 0.99793 0.93192 0.85507 1.21935 0.98552 0.94904 0.85468 1.45704 1.67235 1.16678 1.05648 1.20911 0.77797 0.87792 0.85160 1.90806 1.49896 1.19997 1.85479 1.22492 1.11655 0.92261 0.74999 1.49795 1.04647 1.30540 1.18746 1.74726 1.14821 1.22533 1.04898 1.28172 0.92823 0.94976 0.99517 1.75827 1.12819 1.20339 1.09280 1.78904 1.16431 1.05199 1.05794 1.20260 0.91085 0.88693 0.92175 1.21689 0.96889 1.00296 0.96805 1.21873 0.94560 0.98073 1.00160 1.21325 0.98124 0.93697 1.01941 1.21318 0.98848 0.98846 0.96109 1.20424 0.97860 0.98313 0.98034 1.20779 0.98341 0.96849 0.99672 0.93075 0.93172 0.89925 0.92238 0.95052 0.73913 0.79918 0.78947 0.71005 0.90342 0.93976 0.94414 0.92124 0.91833 0.90721 0.91834 0.90537 0.92901 0.91650 0.92710 0.94964 0.94983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.96 13.97 21.65 0.30 -57.66 16 2 C -0.02 -1.33 5.27 84.86 0.45 -0.88 16 3 Si 0.94 41.51 25.00 68.60 1.72 43.23 16 4 H -0.26 -10.24 6.69 99.48 0.67 -9.58 16 5 H -0.32 -14.96 7.11 99.48 0.71 -14.25 16 6 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.24 -13.00 8.91 84.03 0.75 -12.25 16 8 H 0.03 2.07 7.53 -2.91 -0.02 2.05 16 9 N -0.61 -25.37 1.91 -680.25 -1.30 -26.67 16 10 C 0.13 4.40 4.34 86.38 0.38 4.78 16 11 C 0.12 3.97 5.99 86.38 0.52 4.49 16 12 N -0.70 -16.41 5.56 -463.06 -2.57 -18.99 16 13 C 0.50 12.72 7.90 87.66 0.69 13.41 16 14 O -0.58 -22.15 16.43 -3.02 -0.05 -22.20 16 15 C 0.11 1.59 7.08 85.63 0.61 2.20 16 16 N -0.12 -2.93 3.49 -191.00 -0.67 -3.59 16 17 N -0.32 -7.83 12.13 -61.09 -0.74 -8.57 16 18 C 0.15 3.15 13.26 180.68 2.40 5.54 16 19 N -0.31 -8.28 12.50 -61.10 -0.76 -9.05 16 20 N -0.07 -1.87 13.25 37.02 0.49 -1.38 16 21 C 0.18 6.42 2.31 44.60 0.10 6.52 16 22 C -0.12 -4.01 4.46 30.14 0.13 -3.88 16 23 C -0.11 -2.69 5.86 31.32 0.18 -2.51 16 24 C -0.11 -2.38 5.31 30.14 0.16 -2.22 16 25 C -0.11 -2.62 5.60 30.20 0.17 -2.45 16 26 C -0.11 -2.93 5.26 28.74 0.15 -2.78 16 27 C -0.12 -4.14 4.20 28.74 0.12 -4.02 16 28 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.05 1.91 3.53 -2.39 -0.01 1.90 16 30 H 0.08 2.28 8.05 -2.39 -0.02 2.26 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.42 6.12 8.47 -92.71 -0.79 5.33 16 34 H 0.18 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.19 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.27 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.08 2.38 6.73 -2.39 -0.02 2.36 16 38 H 0.04 1.64 7.87 -2.39 -0.02 1.62 16 39 H 0.04 1.40 6.63 -2.39 -0.02 1.39 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.06 1.29 6.64 -2.39 -0.02 1.28 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.37 6.99 -2.39 -0.02 1.36 16 46 H 0.06 1.63 7.47 -2.39 -0.02 1.61 16 47 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.03 1.28 8.12 -2.38 -0.02 1.26 16 49 H 0.03 1.27 7.20 -2.38 -0.02 1.26 16 Total: -1.00 -82.09 385.79 3.36 -78.72 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.14 Total: 20.19 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 6.81 Total: 5.96 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -5.25 Total: -125.90 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.20 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.72 Total: 43.23 kcal Total: -82.09 3.36 -78.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277375332.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.861 kcal (2) G-P(sol) polarization free energy of solvation -82.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds