Wall clock time and date at job start Tue Mar 31 2020 20:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 N 1.46506 * 109.46940 * 119.99442 * 2 1 3 6 6 N 1.28721 * 125.31881 * 239.69086 * 5 2 1 7 7 N 1.28990 * 108.98155 * 179.82916 * 6 5 2 8 8 C 1.34185 * 107.25438 * 0.42966 * 7 6 5 9 9 C 1.48005 * 126.69739 * 179.75732 * 8 7 6 10 10 O 1.21538 * 119.99903 * 179.97438 * 9 8 7 11 11 N 1.34774 * 119.99721 * 359.97438 * 9 8 7 12 12 C 1.46504 * 119.99685 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.01435 * 34.93879 * 12 11 9 14 14 C 1.53874 * 110.03637 * 273.54580 * 12 11 9 15 15 C 1.54258 * 106.59816 * 240.71581 * 14 12 11 16 16 C 1.54895 * 104.19984 * 23.60847 * 15 14 12 17 17 H 1.09001 * 110.75284 * 80.55103 * 16 15 14 18 18 C 1.52998 * 110.75612 * 203.74462 * 16 15 14 19 19 N 1.46499 * 109.46858 * 293.54030 * 18 16 15 20 20 C 1.36938 * 119.99546 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00622 * 0.02562 * 20 19 18 22 22 C 1.38823 * 119.99868 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99867 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00026 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47339 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47214 * 119.99918 * 24 22 20 27 27 H 1.48498 * 109.47144 * 240.00339 * 24 22 20 28 28 C 1.54266 * 110.03356 * 156.37709 * 12 11 9 29 29 N 1.28875 * 125.31784 * 60.00299 * 5 2 1 30 30 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 31 31 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 32 32 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 35 35 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 36 36 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 37 37 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 38 38 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 39 39 H 0.96993 * 120.00298 * 359.97438 * 11 9 8 40 40 H 1.09004 * 110.02947 * 359.97438 * 14 12 11 41 41 H 1.08996 * 110.03032 * 121.42692 * 14 12 11 42 42 H 1.09005 * 110.48628 * 142.28731 * 15 14 12 43 43 H 1.09003 * 110.48758 * 264.92559 * 15 14 12 44 44 H 1.08995 * 109.47133 * 53.54394 * 18 16 15 45 45 H 1.09001 * 109.46683 * 173.54160 * 18 16 15 46 46 H 0.96997 * 120.00636 * 0.02562 * 19 18 16 47 47 H 0.96994 * 120.00194 * 179.97438 * 23 22 20 48 48 H 1.08998 * 110.48790 * 214.35701 * 28 12 11 49 49 H 1.09005 * 110.48267 * 336.99412 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 7 2.7661 -0.1677 2.1042 7 7 3.0030 -1.0518 3.0131 8 6 2.3777 -2.1800 2.6434 9 6 2.3697 -3.4670 3.3743 10 8 1.7585 -4.4169 2.9256 11 7 3.0402 -3.5855 4.5374 12 6 3.0318 -4.8593 5.2612 13 1 3.0233 -5.6896 4.5550 14 6 1.7994 -4.9357 6.1794 15 6 2.3317 -5.0754 7.6205 16 6 3.7589 -4.4768 7.5581 17 1 3.7236 -3.3884 7.6044 18 6 4.6317 -5.0375 8.6828 19 7 4.1212 -4.5726 9.9749 20 6 4.7465 -4.9489 11.1336 21 1 5.6162 -5.5879 11.0949 22 6 4.2625 -4.5088 12.3580 23 7 3.2023 -3.7304 12.4052 24 14 5.1160 -5.0215 13.9385 25 1 6.2755 -5.8912 13.6154 26 1 5.5901 -3.8130 14.6596 27 1 4.1612 -5.7675 14.7971 28 6 4.2699 -4.9552 6.1764 29 7 1.7709 -1.9180 1.5011 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6766 -1.7490 -1.2491 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 3.5282 -2.8276 4.8953 40 1 1.2078 -4.0249 6.0869 41 1 1.1934 -5.8036 5.9194 42 1 1.7101 -4.5082 8.3134 43 1 2.3705 -6.1248 7.9129 44 1 4.6072 -6.1267 8.6530 45 1 5.6577 -4.6933 8.5523 46 1 3.3403 -3.9983 10.0097 47 1 2.8639 -3.4232 13.2607 48 1 4.6218 -5.9851 6.2355 49 1 5.0629 -4.3003 5.8152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278563631.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:39 Heat of formation + Delta-G solvation = 90.039595 kcal Electronic energy + Delta-G solvation = -28641.310437 eV Core-core repulsion = 24641.461047 eV Total energy + Delta-G solvation = -3999.849390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.74635 -40.09777 -38.25172 -37.87839 -34.86787 -33.90429 -33.42506 -32.65249 -31.03852 -28.76904 -28.37381 -28.22363 -27.93634 -25.49567 -24.82863 -24.23444 -22.18536 -21.48191 -21.07873 -20.09868 -19.61512 -18.31275 -17.72761 -17.12691 -17.02961 -16.44348 -15.34772 -15.06911 -14.88199 -14.77274 -14.64947 -14.32413 -14.19147 -13.97244 -13.56382 -13.36697 -13.16979 -13.02745 -12.94986 -12.78407 -12.55810 -12.51127 -12.19908 -12.16334 -11.86736 -11.80516 -11.38150 -11.32045 -11.16838 -11.08017 -10.84743 -10.77337 -10.68498 -10.50471 -10.42893 -10.26695 -10.18637 -9.89442 -9.62687 -9.21545 -8.82602 -6.85918 -5.72141 -2.99968 0.71411 1.19215 1.29318 2.60726 2.89793 3.46242 3.51763 3.53716 3.54057 3.75875 3.84481 3.95714 4.26588 4.60719 4.67734 4.75866 4.76804 4.77935 4.79527 4.93734 4.96235 4.97950 4.99759 5.07911 5.24199 5.34574 5.41961 5.51289 5.54275 5.56881 5.63530 5.70287 5.73827 5.76097 5.87162 5.92978 6.08329 6.15488 6.29228 6.35964 6.45709 6.62690 6.65442 6.85164 6.98908 7.20901 7.74864 7.80212 7.95510 8.47223 9.58331 10.17866 10.52349 11.50963 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023351 B = 0.001864 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.826303 B =15021.002330 C =15574.587991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.154 4.154 4 C -0.160 4.160 5 N -0.125 5.125 6 N -0.054 5.054 7 N -0.255 5.255 8 C 0.126 3.874 9 C 0.616 3.384 10 O -0.511 6.511 11 N -0.695 5.695 12 C 0.143 3.857 13 H 0.093 0.907 14 C -0.134 4.134 15 C -0.112 4.112 16 C -0.099 4.099 17 H 0.076 0.924 18 C 0.160 3.840 19 N -0.732 5.732 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.123 4.123 29 N -0.246 5.246 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.411 0.589 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.020 0.980 45 H 0.017 0.983 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.085 0.915 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 8.620 -31.261 32.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 C -0.212 4.212 4 C -0.219 4.219 5 N -0.040 5.040 6 N -0.046 5.046 7 N -0.129 5.129 8 C -0.158 4.158 9 C 0.396 3.604 10 O -0.383 6.383 11 N -0.348 5.348 12 C 0.039 3.961 13 H 0.111 0.889 14 C -0.173 4.173 15 C -0.149 4.149 16 C -0.118 4.118 17 H 0.094 0.906 18 C 0.033 3.967 19 N -0.376 5.376 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.162 4.162 29 N -0.099 5.099 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.248 0.752 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.104 0.896 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.513 8.422 -31.603 33.015 hybrid contribution 0.256 -0.031 1.229 1.256 sum -4.257 8.391 -30.373 31.797 Atomic orbital electron populations 1.22268 0.90492 1.04851 1.04314 1.21547 0.96456 0.93141 0.79291 1.22119 1.03282 0.91223 1.04562 1.22265 1.02530 1.02138 0.94948 1.50779 1.29571 1.05409 1.18237 1.78906 1.08264 1.21960 0.95510 1.76170 1.19527 0.98114 1.19113 1.25367 0.99797 0.97272 0.93388 1.16114 0.80218 0.83250 0.80832 1.90848 1.42565 1.37438 1.67418 1.45957 1.51402 1.16070 1.21344 1.21825 0.96332 0.84532 0.93409 0.88912 1.22629 0.96854 1.02334 0.95470 1.22346 0.96041 1.01755 0.94803 1.22340 0.95363 1.00346 0.93722 0.90558 1.20642 0.94712 0.96087 0.85267 1.42352 1.35132 1.60001 1.00090 1.19292 1.08430 1.24357 0.84711 0.91188 1.24738 0.98305 1.00528 0.97620 1.69667 1.25148 1.39073 1.24385 0.86125 0.78570 0.77612 0.83950 1.20594 1.21947 1.21936 1.22685 0.95854 1.02866 0.94768 1.74980 1.20831 0.98897 1.15179 0.91192 0.88870 0.90191 0.90433 0.89006 0.90396 0.90207 0.88877 0.91250 0.75232 0.91516 0.91172 0.91038 0.91187 0.96260 0.96469 0.78255 0.93636 0.89631 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 8.66 37.16 0.32 -0.37 16 2 C 0.18 0.96 1.30 -131.82 -0.17 0.79 16 3 C -0.15 -0.56 7.90 37.16 0.29 -0.27 16 4 C -0.16 -0.65 8.66 37.16 0.32 -0.33 16 5 N -0.13 -1.23 3.72 0.52 0.00 -1.23 16 6 N -0.05 -0.61 12.21 60.35 0.74 0.12 16 7 N -0.25 -3.26 12.26 32.10 0.39 -2.87 16 8 C 0.13 1.66 8.14 -156.25 -1.27 0.39 16 9 C 0.62 8.48 7.83 -12.26 -0.10 8.39 16 10 O -0.51 -8.34 16.77 5.33 0.09 -8.25 16 11 N -0.70 -8.35 4.94 -53.61 -0.26 -8.62 16 12 C 0.14 1.74 3.23 -66.81 -0.22 1.52 16 13 H 0.09 1.15 7.61 -51.93 -0.39 0.75 16 14 C -0.13 -1.78 6.59 -25.62 -0.17 -1.94 16 15 C -0.11 -1.71 5.97 -25.07 -0.15 -1.86 16 16 C -0.10 -1.54 2.96 -88.63 -0.26 -1.80 16 17 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 18 C 0.16 3.18 5.69 -4.04 -0.02 3.16 16 19 N -0.73 -18.55 5.45 -59.91 -0.33 -18.88 16 20 C -0.24 -6.69 9.99 -15.05 -0.15 -6.84 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 23 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 24 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 C -0.12 -1.50 5.88 -25.07 -0.15 -1.64 16 29 N -0.25 -3.01 11.85 32.11 0.38 -2.63 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.33 8.13 -51.93 -0.42 -0.09 16 34 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.41 4.52 8.30 -40.82 -0.34 4.18 16 40 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.11 8.01 -51.93 -0.42 0.70 16 44 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.38 10.22 7.53 -40.82 -0.31 9.92 16 47 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 49 H 0.07 0.81 7.98 -51.93 -0.41 0.40 16 LS Contribution 404.89 15.07 6.10 6.10 Total: -1.00 -34.53 404.89 -7.16 -41.69 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -8.16 Total: 6.12 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.81 Total: -1.38 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: 1.65 Total: -61.93 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.53 -7.16 -41.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278563631.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.729 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds