Wall clock time and date at job start Tue Mar 31 2020 20:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 N 1.46506 * 109.46940 * 119.99442 * 2 1 3 6 6 N 1.28721 * 125.31881 * 239.69086 * 5 2 1 7 7 N 1.28990 * 108.98155 * 179.82916 * 6 5 2 8 8 C 1.34185 * 107.25438 * 0.42966 * 7 6 5 9 9 C 1.48005 * 126.69739 * 179.75732 * 8 7 6 10 10 O 1.21538 * 119.99903 * 179.97438 * 9 8 7 11 11 N 1.34774 * 119.99721 * 359.97438 * 9 8 7 12 12 C 1.46504 * 119.99685 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.01435 * 34.93879 * 12 11 9 14 14 C 1.53874 * 110.03637 * 273.54580 * 12 11 9 15 15 C 1.54258 * 106.59816 * 240.71581 * 14 12 11 16 16 C 1.54895 * 104.19984 * 23.60847 * 15 14 12 17 17 H 1.09001 * 110.75284 * 80.55103 * 16 15 14 18 18 C 1.52998 * 110.75612 * 203.74462 * 16 15 14 19 19 N 1.46499 * 109.46858 * 293.54030 * 18 16 15 20 20 C 1.36938 * 119.99546 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00622 * 0.02562 * 20 19 18 22 22 C 1.38823 * 119.99868 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99867 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00026 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47339 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47214 * 119.99918 * 24 22 20 27 27 H 1.48498 * 109.47144 * 240.00339 * 24 22 20 28 28 C 1.54266 * 110.03356 * 156.37709 * 12 11 9 29 29 N 1.28875 * 125.31784 * 60.00299 * 5 2 1 30 30 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 31 31 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 32 32 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 35 35 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 36 36 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 37 37 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 38 38 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 39 39 H 0.96993 * 120.00298 * 359.97438 * 11 9 8 40 40 H 1.09004 * 110.02947 * 359.97438 * 14 12 11 41 41 H 1.08996 * 110.03032 * 121.42692 * 14 12 11 42 42 H 1.09005 * 110.48628 * 142.28731 * 15 14 12 43 43 H 1.09003 * 110.48758 * 264.92559 * 15 14 12 44 44 H 1.08995 * 109.47133 * 53.54394 * 18 16 15 45 45 H 1.09001 * 109.46683 * 173.54160 * 18 16 15 46 46 H 0.96997 * 120.00636 * 0.02562 * 19 18 16 47 47 H 0.96994 * 120.00194 * 179.97438 * 23 22 20 48 48 H 1.08998 * 110.48790 * 214.35701 * 28 12 11 49 49 H 1.09005 * 110.48267 * 336.99412 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 7 2.7661 -0.1677 2.1042 7 7 3.0030 -1.0518 3.0131 8 6 2.3777 -2.1800 2.6434 9 6 2.3697 -3.4670 3.3743 10 8 1.7585 -4.4169 2.9256 11 7 3.0402 -3.5855 4.5374 12 6 3.0318 -4.8593 5.2612 13 1 3.0233 -5.6896 4.5550 14 6 1.7994 -4.9357 6.1794 15 6 2.3317 -5.0754 7.6205 16 6 3.7589 -4.4768 7.5581 17 1 3.7236 -3.3884 7.6044 18 6 4.6317 -5.0375 8.6828 19 7 4.1212 -4.5726 9.9749 20 6 4.7465 -4.9489 11.1336 21 1 5.6162 -5.5879 11.0949 22 6 4.2625 -4.5088 12.3580 23 7 3.2023 -3.7304 12.4052 24 14 5.1160 -5.0215 13.9385 25 1 6.2755 -5.8912 13.6154 26 1 5.5901 -3.8130 14.6596 27 1 4.1612 -5.7675 14.7971 28 6 4.2699 -4.9552 6.1764 29 7 1.7709 -1.9180 1.5011 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6766 -1.7490 -1.2491 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 3.5282 -2.8276 4.8953 40 1 1.2078 -4.0249 6.0869 41 1 1.1934 -5.8036 5.9194 42 1 1.7101 -4.5082 8.3134 43 1 2.3705 -6.1248 7.9129 44 1 4.6072 -6.1267 8.6530 45 1 5.6577 -4.6933 8.5523 46 1 3.3403 -3.9983 10.0097 47 1 2.8639 -3.4232 13.2607 48 1 4.6218 -5.9851 6.2355 49 1 5.0629 -4.3003 5.8152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278563631.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:38 Heat of formation + Delta-G solvation = 65.930022 kcal Electronic energy + Delta-G solvation = -28642.355906 eV Core-core repulsion = 24641.461047 eV Total energy + Delta-G solvation = -4000.894859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.61934 -41.18353 -39.26319 -38.60549 -36.50183 -35.00273 -34.59894 -33.61999 -32.82089 -30.16438 -29.34356 -28.56963 -28.54494 -26.69210 -25.80508 -25.61771 -23.94462 -22.47802 -21.78300 -21.17215 -20.96747 -19.20957 -19.07974 -18.57038 -17.74371 -17.54263 -16.71863 -16.41216 -16.02040 -15.80915 -15.43577 -15.27888 -15.16224 -15.11840 -14.97508 -14.53582 -14.40464 -14.06038 -13.55841 -13.49175 -13.29002 -13.23811 -13.09750 -12.97278 -12.85603 -12.81912 -12.65161 -12.38794 -12.29656 -12.13219 -12.12451 -12.11530 -12.04826 -11.90247 -11.60232 -11.54145 -11.50445 -11.49138 -11.43106 -10.90172 -10.27641 -8.94918 -7.92795 -5.20502 -0.18464 0.23121 0.62642 1.48281 1.49001 1.59148 1.66146 1.85319 2.57882 2.77868 2.93486 3.40848 3.47579 3.52962 3.58055 3.59382 3.64427 3.91312 3.98949 4.18941 4.28250 4.40145 4.43668 4.51808 4.52566 4.54249 4.58285 4.59632 4.62472 4.71896 4.72174 4.72817 4.78576 4.86768 5.01303 5.04007 5.09405 5.10222 5.16359 5.17519 5.21201 5.24347 5.37336 5.48964 5.52218 5.59003 6.19593 6.30243 6.80586 7.02141 7.36284 8.14957 8.37097 9.31174 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023351 B = 0.001864 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.826303 B =15021.002330 C =15574.587991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 C -0.151 4.151 4 C -0.157 4.157 5 N -0.109 5.109 6 N -0.059 5.059 7 N -0.269 5.269 8 C 0.111 3.889 9 C 0.619 3.381 10 O -0.541 6.541 11 N -0.685 5.685 12 C 0.149 3.851 13 H 0.100 0.900 14 C -0.126 4.126 15 C -0.108 4.108 16 C -0.092 4.092 17 H 0.070 0.930 18 C 0.158 3.842 19 N -0.745 5.745 20 C -0.241 4.241 21 H 0.076 0.924 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.973 3.027 25 H -0.265 1.265 26 H -0.294 1.294 27 H -0.294 1.294 28 C -0.109 4.109 29 N -0.257 5.257 30 H 0.060 0.940 31 H 0.129 0.871 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.127 0.873 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.129 0.871 38 H 0.062 0.938 39 H 0.418 0.582 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.024 0.976 45 H 0.021 0.979 46 H 0.373 0.627 47 H 0.250 0.750 48 H 0.099 0.901 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 8.963 -33.314 34.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.081 3.919 3 C -0.209 4.209 4 C -0.215 4.215 5 N -0.026 5.026 6 N -0.051 5.051 7 N -0.143 5.143 8 C -0.172 4.172 9 C 0.400 3.600 10 O -0.415 6.415 11 N -0.337 5.337 12 C 0.045 3.955 13 H 0.118 0.882 14 C -0.164 4.164 15 C -0.146 4.146 16 C -0.111 4.111 17 H 0.088 0.912 18 C 0.032 3.968 19 N -0.387 5.387 20 C -0.373 4.373 21 H 0.094 0.906 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.802 3.198 25 H -0.190 1.190 26 H -0.222 1.222 27 H -0.222 1.222 28 C -0.148 4.148 29 N -0.112 5.112 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.145 0.855 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.147 0.853 38 H 0.081 0.919 39 H 0.255 0.745 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.041 0.959 45 H 0.039 0.961 46 H 0.205 0.795 47 H 0.059 0.941 48 H 0.117 0.883 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.766 8.767 -33.678 35.004 hybrid contribution 0.012 -0.084 1.739 1.741 sum -3.754 8.683 -31.939 33.311 Atomic orbital electron populations 1.22312 0.89399 1.04253 1.05650 1.22224 0.97378 0.94036 0.78296 1.22184 1.02877 0.89934 1.05859 1.22306 1.02125 1.01591 0.95474 1.51341 1.28066 1.04672 1.18494 1.78835 1.08734 1.21770 0.95779 1.76129 1.20097 0.98158 1.19888 1.25265 1.00731 0.97285 0.93951 1.16177 0.79773 0.83128 0.80944 1.90825 1.43949 1.38437 1.68266 1.45904 1.50798 1.16260 1.20746 1.21756 0.95700 0.84792 0.93242 0.88241 1.22538 0.97340 1.02428 0.94132 1.22254 0.95780 1.00863 0.95700 1.22220 0.94844 0.99818 0.94249 0.91160 1.20829 0.95447 0.96252 0.84291 1.42583 1.34781 1.59885 1.01472 1.19709 1.08256 1.23477 0.85887 0.90598 1.25571 0.99360 1.01290 1.00923 1.69824 1.26863 1.40747 1.24758 0.85073 0.77801 0.77135 0.79768 1.18965 1.22151 1.22156 1.22608 0.96092 1.03950 0.92100 1.74946 1.21050 1.00100 1.15055 0.92125 0.85241 0.91723 0.91099 0.85452 0.91321 0.91706 0.85284 0.91884 0.74503 0.92089 0.90418 0.93439 0.91727 0.95856 0.96078 0.79472 0.94125 0.88272 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 8.66 71.98 0.62 -0.47 16 2 C 0.16 1.49 1.30 3.60 0.00 1.50 16 3 C -0.15 -0.78 7.90 71.98 0.57 -0.21 16 4 C -0.16 -0.98 8.66 71.98 0.62 -0.35 16 5 N -0.11 -2.08 3.72 -152.26 -0.57 -2.65 16 6 N -0.06 -1.32 12.21 37.02 0.45 -0.87 16 7 N -0.27 -6.87 12.26 -52.37 -0.64 -7.51 16 8 C 0.11 2.94 8.14 137.15 1.12 4.06 16 9 C 0.62 16.89 7.83 86.83 0.68 17.57 16 10 O -0.54 -17.56 16.77 -3.83 -0.06 -17.63 16 11 N -0.69 -15.86 4.94 -441.81 -2.18 -18.05 16 12 C 0.15 3.41 3.23 45.71 0.15 3.56 16 13 H 0.10 2.26 7.61 -2.39 -0.02 2.25 16 14 C -0.13 -3.25 6.59 31.32 0.21 -3.04 16 15 C -0.11 -3.32 5.97 31.67 0.19 -3.13 16 16 C -0.09 -2.81 2.96 -9.50 -0.03 -2.84 16 17 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 18 C 0.16 6.15 5.69 86.38 0.49 6.64 16 19 N -0.74 -38.06 5.45 -343.46 -1.87 -39.94 16 20 C -0.24 -13.64 9.99 84.04 0.84 -12.80 16 21 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 22 C -0.08 -4.64 5.50 84.87 0.47 -4.17 16 23 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 24 Si 0.97 46.82 29.55 68.60 2.03 48.84 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 28 C -0.11 -2.43 5.88 31.67 0.19 -2.24 16 29 N -0.26 -6.30 11.85 -52.32 -0.62 -6.92 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.13 -0.07 8.14 -2.39 -0.02 -0.08 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.49 8.13 -2.39 -0.02 0.47 16 34 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.13 -0.14 8.14 -2.39 -0.02 -0.15 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.42 8.78 8.30 -92.71 -0.77 8.01 16 40 H 0.06 1.66 7.92 -2.39 -0.02 1.64 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.06 2.04 8.01 -2.39 -0.02 2.03 16 44 H 0.02 0.91 8.10 -2.39 -0.02 0.89 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.37 20.39 7.53 -92.71 -0.70 19.69 16 47 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 48 H 0.10 2.01 8.05 -2.39 -0.02 1.99 16 49 H 0.09 1.76 7.98 -2.38 -0.02 1.75 16 Total: -1.00 -75.45 404.89 2.42 -73.03 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.51 Total: 27.75 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 6.11 Total: 4.07 kcal Atomic # 7 Polarization: -130.91 SS G_CDS: -5.15 Total: -136.06 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.06 Total: -17.63 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -75.45 2.42 -73.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278563631.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.955 kcal (2) G-P(sol) polarization free energy of solvation -75.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds