Wall clock time and date at job start Tue Mar 31 2020 20:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47106 * 2 1 4 4 C 1.53001 * 109.47074 * 240.00344 * 2 1 3 5 5 N 1.46501 * 109.47034 * 120.00077 * 2 1 3 6 6 N 1.28719 * 125.31937 * 0.02773 * 5 2 1 7 7 N 1.28984 * 108.98540 * 179.97438 * 6 5 2 8 8 C 1.34192 * 107.25351 * 0.02562 * 7 6 5 9 9 C 1.48002 * 126.69803 * 180.02562 * 8 7 6 10 10 O 1.21534 * 119.99934 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99934 * 0.02562 * 9 8 7 12 12 C 1.46504 * 119.99918 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.43036 * 323.90571 * 12 11 9 14 14 C 1.54265 * 110.48748 * 86.45289 * 12 11 9 15 15 C 1.53877 * 106.59735 * 142.42096 * 14 12 11 16 16 C 1.54267 * 106.59837 * 0.02562 * 15 14 12 17 17 H 1.08989 * 110.49081 * 95.20071 * 16 15 14 18 18 C 1.53005 * 110.48017 * 217.71466 * 16 15 14 19 19 N 1.46505 * 109.46904 * 293.54173 * 18 16 15 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 C 1.54890 * 104.19604 * 336.38676 * 16 15 14 29 29 N 1.28872 * 125.31600 * 180.34195 * 5 2 1 30 30 H 1.09000 * 109.46970 * 299.99874 * 1 2 3 31 31 H 1.09006 * 109.46871 * 60.00014 * 1 2 3 32 32 H 1.08999 * 109.47180 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47170 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47022 * 300.00216 * 3 2 1 35 35 H 1.09003 * 109.46662 * 59.99951 * 3 2 1 36 36 H 1.08999 * 109.46959 * 299.99942 * 4 2 1 37 37 H 1.08996 * 109.47439 * 60.00167 * 4 2 1 38 38 H 1.09004 * 109.46837 * 180.02562 * 4 2 1 39 39 H 0.96996 * 120.00071 * 359.97438 * 11 9 8 40 40 H 1.08996 * 110.03262 * 23.13099 * 14 12 11 41 41 H 1.09007 * 110.06825 * 261.72456 * 14 12 11 42 42 H 1.08999 * 110.02860 * 240.71086 * 15 14 12 43 43 H 1.09005 * 110.06721 * 119.30612 * 15 14 12 44 44 H 1.09003 * 109.46946 * 173.54932 * 18 16 15 45 45 H 1.08993 * 109.47679 * 53.54475 * 18 16 15 46 46 H 0.97000 * 119.99792 * 0.02562 * 19 18 16 47 47 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 48 48 H 1.08993 * 110.75819 * 156.26048 * 28 16 15 49 49 H 1.09001 * 110.75447 * 279.63428 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 7 1.2762 -1.2169 2.1067 7 7 2.0307 -1.7403 3.0124 8 6 3.3029 -1.5261 2.6432 9 6 4.5190 -1.9484 3.3735 10 8 5.6182 -1.6880 2.9252 11 7 4.4073 -2.6217 4.5356 12 6 5.6111 -3.0393 5.2588 13 1 6.3948 -3.3281 4.5585 14 6 6.1042 -1.9083 6.1848 15 6 6.6185 -2.5837 7.4682 16 6 6.4205 -4.1016 7.2770 17 1 7.3357 -4.5619 6.9051 18 6 5.9900 -4.7551 8.5918 19 7 7.0847 -4.6684 9.5616 20 6 6.9293 -5.1904 10.8180 21 1 5.9999 -5.6664 11.0939 22 6 7.9686 -5.1133 11.7350 23 7 9.1013 -4.5337 11.3986 24 14 7.7594 -5.8322 13.4464 25 1 6.4027 -6.4230 13.5726 26 1 8.7815 -6.8862 13.6689 27 1 7.9272 -4.7584 14.4583 28 6 5.2901 -4.2075 6.2235 29 7 3.2581 -0.8611 1.5041 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7488 -1.2493 37 1 1.6767 -0.2073 -2.1392 38 1 3.1300 -0.7216 -1.2490 39 1 3.5300 -2.8292 4.8936 40 1 5.2812 -1.2341 6.4217 41 1 6.9119 -1.3565 5.7038 42 1 6.0450 -2.2372 8.3279 43 1 7.6759 -2.3604 7.6104 44 1 5.7445 -5.8021 8.4138 45 1 5.1146 -4.2384 8.9849 46 1 7.9195 -4.2412 9.3137 47 1 9.8275 -4.4795 12.0395 48 1 5.3366 -5.1634 5.7018 49 1 4.3143 -4.0670 6.6885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278563632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:44 Heat of formation + Delta-G solvation = 89.125984 kcal Electronic energy + Delta-G solvation = -28420.122602 eV Core-core repulsion = 24420.233595 eV Total energy + Delta-G solvation = -3999.889007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.79639 -40.06681 -38.27841 -37.91345 -34.93483 -33.95109 -33.50865 -32.71870 -31.03765 -28.74963 -28.40621 -28.25580 -27.92729 -25.52852 -24.87323 -24.15391 -22.15577 -21.50118 -21.10544 -20.60371 -19.21630 -18.30224 -17.77603 -17.16380 -17.04321 -16.41357 -15.61485 -15.12102 -15.01114 -14.76563 -14.60579 -14.44506 -14.30218 -13.61695 -13.51933 -13.24058 -13.22159 -13.16599 -13.06549 -12.81448 -12.60698 -12.54654 -12.22934 -12.04306 -11.85817 -11.78888 -11.59704 -11.42540 -11.36782 -11.04965 -10.84140 -10.75596 -10.71479 -10.49704 -10.45054 -10.32891 -10.06170 -9.87869 -9.63815 -9.22118 -8.82811 -6.86214 -5.72130 -3.00119 0.67037 1.14074 1.24821 2.56053 2.85972 3.46284 3.49420 3.51795 3.54121 3.70460 3.80738 3.91995 4.21829 4.60986 4.67262 4.72521 4.74002 4.74471 4.80906 4.90356 4.92142 4.94253 4.95903 5.07348 5.19470 5.31363 5.38764 5.48260 5.50566 5.58474 5.62509 5.66416 5.71399 5.71513 5.86270 5.93757 6.08177 6.17708 6.30951 6.37332 6.41295 6.61398 6.67663 6.85855 6.98971 7.16880 7.74744 7.76132 7.91053 8.47107 9.58311 10.17630 10.52282 11.50897 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.037078 B = 0.001675 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.982780 B =16710.927127 C =17001.991915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.161 4.161 5 N -0.125 5.125 6 N -0.054 5.054 7 N -0.256 5.256 8 C 0.126 3.874 9 C 0.616 3.384 10 O -0.508 6.508 11 N -0.697 5.697 12 C 0.141 3.859 13 H 0.098 0.902 14 C -0.134 4.134 15 C -0.112 4.112 16 C -0.095 4.095 17 H 0.078 0.922 18 C 0.161 3.839 19 N -0.732 5.732 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.121 4.121 29 N -0.245 5.245 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.410 0.590 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.018 0.982 45 H 0.020 0.980 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.073 0.927 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.595 11.208 -28.743 36.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.219 4.219 5 N -0.040 5.040 6 N -0.047 5.047 7 N -0.131 5.131 8 C -0.158 4.158 9 C 0.395 3.605 10 O -0.379 6.379 11 N -0.348 5.348 12 C 0.037 3.963 13 H 0.116 0.884 14 C -0.173 4.173 15 C -0.150 4.150 16 C -0.114 4.114 17 H 0.096 0.904 18 C 0.033 3.967 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.159 4.159 29 N -0.098 5.098 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.246 0.754 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.036 0.964 45 H 0.037 0.963 46 H 0.218 0.782 47 H 0.064 0.936 48 H 0.092 0.908 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.465 11.391 -29.055 36.262 hybrid contribution 0.227 -0.336 1.171 1.239 sum -18.238 11.055 -27.884 35.105 Atomic orbital electron populations 1.22119 0.89693 1.04803 1.04549 1.21556 0.96684 0.92911 0.79293 1.22272 1.03590 0.91777 1.04300 1.22269 1.03573 1.01146 0.94924 1.50779 1.00916 1.34173 1.18097 1.78887 1.21560 1.08803 0.95455 1.76146 1.00069 1.17559 1.19342 1.25377 0.94607 1.02215 0.93576 1.16120 0.84589 0.78931 0.80838 1.90862 1.25249 1.54567 1.67228 1.45838 1.11368 1.56036 1.21584 1.22090 0.86068 0.94912 0.93209 0.88433 1.22581 1.01014 0.97571 0.96139 1.22102 1.01908 0.94512 0.96460 1.22095 0.97703 0.96025 0.95558 0.90375 1.20679 0.91860 0.96561 0.87576 1.42356 1.14151 1.70472 1.10631 1.19290 0.98768 1.29751 0.89069 0.91183 1.24736 0.96215 1.01680 0.98495 1.69672 1.04436 1.49218 1.34890 0.86128 0.77160 0.78296 0.84689 1.20594 1.21924 1.21936 1.22753 1.00131 0.97001 0.96030 1.74995 1.02707 1.16900 1.15177 0.90430 0.88989 0.90439 0.90154 0.88852 0.91223 0.91237 0.88849 0.90171 0.75362 0.91640 0.91381 0.90993 0.91369 0.96433 0.96267 0.78219 0.93628 0.90784 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 7.90 37.16 0.29 -0.18 16 2 C 0.18 0.88 1.30 -131.82 -0.17 0.71 16 3 C -0.16 -0.63 8.65 37.16 0.32 -0.30 16 4 C -0.16 -0.61 8.67 37.16 0.32 -0.28 16 5 N -0.12 -1.16 3.72 0.53 0.00 -1.16 16 6 N -0.05 -0.58 12.21 60.35 0.74 0.16 16 7 N -0.26 -3.07 12.26 32.10 0.39 -2.68 16 8 C 0.13 1.60 8.14 -156.24 -1.27 0.33 16 9 C 0.62 8.27 7.83 -12.26 -0.10 8.17 16 10 O -0.51 -8.30 16.81 5.34 0.09 -8.21 16 11 N -0.70 -7.99 5.11 -53.10 -0.27 -8.26 16 12 C 0.14 1.73 3.15 -66.28 -0.21 1.52 16 13 H 0.10 1.28 7.66 -51.93 -0.40 0.88 16 14 C -0.13 -1.78 6.53 -25.61 -0.17 -1.95 16 15 C -0.11 -1.73 6.05 -25.61 -0.15 -1.89 16 16 C -0.09 -1.49 2.93 -88.96 -0.26 -1.75 16 17 H 0.08 1.28 8.14 -51.94 -0.42 0.85 16 18 C 0.16 3.20 5.57 -4.04 -0.02 3.17 16 19 N -0.73 -18.60 5.44 -59.90 -0.33 -18.92 16 20 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 23 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 24 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 C -0.12 -1.48 5.92 -24.75 -0.15 -1.62 16 29 N -0.24 -2.90 11.85 32.11 0.38 -2.52 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.41 4.02 8.29 -40.82 -0.34 3.68 16 40 H 0.06 0.84 8.04 -51.93 -0.42 0.42 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.21 7.77 -51.93 -0.40 0.81 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 46 H 0.38 10.24 7.52 -40.82 -0.31 9.94 16 47 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 LS Contribution 404.88 15.07 6.10 6.10 Total: -1.00 -34.53 404.88 -7.16 -41.69 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.16 Total: 5.45 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.81 Total: -1.49 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 1.64 Total: -61.17 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.53 -7.16 -41.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278563632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.816 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds