Wall clock time and date at job start Tue Mar 31 2020 20:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47106 * 2 1 4 4 C 1.53001 * 109.47074 * 240.00344 * 2 1 3 5 5 N 1.46501 * 109.47034 * 120.00077 * 2 1 3 6 6 N 1.28719 * 125.31937 * 0.02773 * 5 2 1 7 7 N 1.28984 * 108.98540 * 179.97438 * 6 5 2 8 8 C 1.34192 * 107.25351 * 0.02562 * 7 6 5 9 9 C 1.48002 * 126.69803 * 180.02562 * 8 7 6 10 10 O 1.21534 * 119.99934 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99934 * 0.02562 * 9 8 7 12 12 C 1.46504 * 119.99918 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.43036 * 323.90571 * 12 11 9 14 14 C 1.54265 * 110.48748 * 86.45289 * 12 11 9 15 15 C 1.53877 * 106.59735 * 142.42096 * 14 12 11 16 16 C 1.54267 * 106.59837 * 0.02562 * 15 14 12 17 17 H 1.08989 * 110.49081 * 95.20071 * 16 15 14 18 18 C 1.53005 * 110.48017 * 217.71466 * 16 15 14 19 19 N 1.46505 * 109.46904 * 293.54173 * 18 16 15 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 C 1.54890 * 104.19604 * 336.38676 * 16 15 14 29 29 N 1.28872 * 125.31600 * 180.34195 * 5 2 1 30 30 H 1.09000 * 109.46970 * 299.99874 * 1 2 3 31 31 H 1.09006 * 109.46871 * 60.00014 * 1 2 3 32 32 H 1.08999 * 109.47180 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47170 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47022 * 300.00216 * 3 2 1 35 35 H 1.09003 * 109.46662 * 59.99951 * 3 2 1 36 36 H 1.08999 * 109.46959 * 299.99942 * 4 2 1 37 37 H 1.08996 * 109.47439 * 60.00167 * 4 2 1 38 38 H 1.09004 * 109.46837 * 180.02562 * 4 2 1 39 39 H 0.96996 * 120.00071 * 359.97438 * 11 9 8 40 40 H 1.08996 * 110.03262 * 23.13099 * 14 12 11 41 41 H 1.09007 * 110.06825 * 261.72456 * 14 12 11 42 42 H 1.08999 * 110.02860 * 240.71086 * 15 14 12 43 43 H 1.09005 * 110.06721 * 119.30612 * 15 14 12 44 44 H 1.09003 * 109.46946 * 173.54932 * 18 16 15 45 45 H 1.08993 * 109.47679 * 53.54475 * 18 16 15 46 46 H 0.97000 * 119.99792 * 0.02562 * 19 18 16 47 47 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 48 48 H 1.08993 * 110.75819 * 156.26048 * 28 16 15 49 49 H 1.09001 * 110.75447 * 279.63428 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 7 1.2762 -1.2169 2.1067 7 7 2.0307 -1.7403 3.0124 8 6 3.3029 -1.5261 2.6432 9 6 4.5190 -1.9484 3.3735 10 8 5.6182 -1.6880 2.9252 11 7 4.4073 -2.6217 4.5356 12 6 5.6111 -3.0393 5.2588 13 1 6.3948 -3.3281 4.5585 14 6 6.1042 -1.9083 6.1848 15 6 6.6185 -2.5837 7.4682 16 6 6.4205 -4.1016 7.2770 17 1 7.3357 -4.5619 6.9051 18 6 5.9900 -4.7551 8.5918 19 7 7.0847 -4.6684 9.5616 20 6 6.9293 -5.1904 10.8180 21 1 5.9999 -5.6664 11.0939 22 6 7.9686 -5.1133 11.7350 23 7 9.1013 -4.5337 11.3986 24 14 7.7594 -5.8322 13.4464 25 1 6.4027 -6.4230 13.5726 26 1 8.7815 -6.8862 13.6689 27 1 7.9272 -4.7584 14.4583 28 6 5.2901 -4.2075 6.2235 29 7 3.2581 -0.8611 1.5041 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7488 -1.2493 37 1 1.6767 -0.2073 -2.1392 38 1 3.1300 -0.7216 -1.2490 39 1 3.5300 -2.8292 4.8936 40 1 5.2812 -1.2341 6.4217 41 1 6.9119 -1.3565 5.7038 42 1 6.0450 -2.2372 8.3279 43 1 7.6759 -2.3604 7.6104 44 1 5.7445 -5.8021 8.4138 45 1 5.1146 -4.2384 8.9849 46 1 7.9195 -4.2412 9.3137 47 1 9.8275 -4.4795 12.0395 48 1 5.3366 -5.1634 5.7018 49 1 4.3143 -4.0670 6.6885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278563632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:43 Heat of formation + Delta-G solvation = 64.925323 kcal Electronic energy + Delta-G solvation = -28421.172021 eV Core-core repulsion = 24420.233595 eV Total energy + Delta-G solvation = -4000.938426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.62131 -41.14037 -39.29419 -38.60744 -36.52094 -35.09371 -34.62847 -33.62736 -32.83974 -30.14388 -29.34101 -28.56290 -28.54530 -26.72117 -25.73453 -25.59324 -23.91283 -22.47422 -21.80474 -21.68767 -20.51700 -19.24330 -19.00886 -18.57343 -17.74239 -17.57079 -16.81992 -16.57318 -15.99724 -15.92502 -15.28769 -15.23212 -15.15036 -15.12008 -15.01783 -14.53211 -14.29154 -14.06354 -13.49962 -13.42937 -13.30058 -13.28473 -13.23631 -12.94020 -12.85343 -12.79910 -12.65931 -12.60272 -12.37402 -12.13044 -12.12345 -12.10995 -12.06315 -11.80344 -11.70303 -11.59041 -11.49909 -11.48676 -11.30185 -10.90608 -10.27518 -8.95336 -7.92716 -5.20673 -0.18556 0.22936 0.61904 1.48528 1.49283 1.59413 1.63505 1.84300 2.57920 2.76110 2.92597 3.40937 3.47604 3.51928 3.57200 3.62081 3.66082 3.88974 3.98444 4.18836 4.28276 4.37622 4.40754 4.48619 4.51608 4.51873 4.57314 4.59253 4.59717 4.66785 4.72296 4.72505 4.79754 4.93478 5.00657 5.01571 5.08916 5.10322 5.16377 5.17815 5.21592 5.24072 5.36173 5.46187 5.52853 5.58265 6.19580 6.30106 6.81342 7.01886 7.36315 8.14533 8.36972 9.31175 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.037078 B = 0.001675 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.982780 B =16710.927127 C =17001.991915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 C -0.158 4.158 4 C -0.158 4.158 5 N -0.109 5.109 6 N -0.057 5.057 7 N -0.266 5.266 8 C 0.112 3.888 9 C 0.619 3.381 10 O -0.542 6.542 11 N -0.682 5.682 12 C 0.148 3.852 13 H 0.093 0.907 14 C -0.126 4.126 15 C -0.107 4.107 16 C -0.089 4.089 17 H 0.071 0.929 18 C 0.159 3.841 19 N -0.745 5.745 20 C -0.243 4.243 21 H 0.076 0.924 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.973 3.027 25 H -0.265 1.265 26 H -0.294 1.294 27 H -0.294 1.294 28 C -0.106 4.106 29 N -0.259 5.259 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.128 0.872 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.128 0.872 38 H 0.063 0.937 39 H 0.421 0.579 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.374 0.626 47 H 0.250 0.750 48 H 0.091 0.909 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.040 11.347 -30.250 38.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.081 3.919 3 C -0.216 4.216 4 C -0.216 4.216 5 N -0.026 5.026 6 N -0.050 5.050 7 N -0.140 5.140 8 C -0.171 4.171 9 C 0.399 3.601 10 O -0.416 6.416 11 N -0.334 5.334 12 C 0.044 3.956 13 H 0.111 0.889 14 C -0.164 4.164 15 C -0.145 4.145 16 C -0.108 4.108 17 H 0.090 0.910 18 C 0.033 3.967 19 N -0.388 5.388 20 C -0.375 4.375 21 H 0.094 0.906 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.802 3.198 25 H -0.190 1.190 26 H -0.221 1.221 27 H -0.222 1.222 28 C -0.145 4.145 29 N -0.113 5.113 30 H 0.088 0.912 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.147 0.853 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.259 0.741 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.040 0.960 45 H 0.042 0.958 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.109 0.891 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.990 11.511 -30.570 38.828 hybrid contribution 0.893 -0.319 1.520 1.791 sum -20.097 11.192 -29.051 37.055 Atomic orbital electron populations 1.22183 0.87904 1.04824 1.05895 1.22216 0.98082 0.93336 0.78256 1.22315 1.02531 0.91116 1.05679 1.22310 1.02527 1.01187 0.95557 1.51325 1.00030 1.32868 1.18383 1.78819 1.21499 1.08980 0.95665 1.76106 0.99750 1.18120 1.20003 1.25200 0.94560 1.03241 0.94119 1.16206 0.84395 0.78521 0.80957 1.90842 1.26528 1.56066 1.68179 1.45685 1.11629 1.55191 1.20876 1.21921 0.86270 0.94441 0.92927 0.88929 1.22480 1.01083 0.97798 0.95063 1.22000 1.00711 0.94744 0.97078 1.21975 0.98817 0.95496 0.94534 0.91040 1.20857 0.90424 0.97153 0.88282 1.42585 1.15125 1.70130 1.10939 1.19710 0.98759 1.28784 0.90225 0.90577 1.25567 0.96153 1.02868 1.02432 1.69829 1.05228 1.51056 1.36014 0.85075 0.77579 0.77222 0.79904 1.18967 1.22112 1.22160 1.22659 0.99259 0.97753 0.94801 1.74963 1.04071 1.17099 1.15130 0.91163 0.85538 0.91062 0.91818 0.85316 0.91981 0.91860 0.85327 0.91812 0.74110 0.90903 0.91794 0.92425 0.93045 0.95997 0.95847 0.79432 0.94114 0.89063 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 7.90 71.98 0.57 -0.01 16 2 C 0.16 1.33 1.30 3.61 0.00 1.33 16 3 C -0.16 -0.94 8.65 71.98 0.62 -0.32 16 4 C -0.16 -0.89 8.67 71.98 0.62 -0.26 16 5 N -0.11 -1.95 3.72 -152.25 -0.57 -2.51 16 6 N -0.06 -1.18 12.21 37.02 0.45 -0.72 16 7 N -0.27 -6.18 12.26 -52.36 -0.64 -6.83 16 8 C 0.11 2.81 8.14 137.15 1.12 3.93 16 9 C 0.62 16.40 7.83 86.83 0.68 17.08 16 10 O -0.54 -17.81 16.81 -3.82 -0.06 -17.87 16 11 N -0.68 -14.83 5.11 -440.19 -2.25 -17.08 16 12 C 0.15 3.47 3.15 46.06 0.15 3.62 16 13 H 0.09 2.35 7.66 -2.38 -0.02 2.33 16 14 C -0.13 -3.27 6.53 31.32 0.20 -3.06 16 15 C -0.11 -3.34 6.05 31.32 0.19 -3.15 16 16 C -0.09 -2.74 2.93 -9.72 -0.03 -2.77 16 17 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 18 C 0.16 6.21 5.57 86.38 0.48 6.70 16 19 N -0.75 -38.16 5.44 -343.44 -1.87 -40.03 16 20 C -0.24 -13.73 9.99 84.04 0.84 -12.89 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 22 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 23 N -0.97 -60.33 13.06 21.65 0.28 -60.05 16 24 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 27 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 28 C -0.11 -2.39 5.92 31.88 0.19 -2.20 16 29 N -0.26 -6.07 11.85 -52.31 -0.62 -6.69 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.13 -0.38 8.14 -2.38 -0.02 -0.40 16 32 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.42 7.51 8.29 -92.71 -0.77 6.74 16 40 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 41 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.06 1.95 7.77 -2.39 -0.02 1.93 16 43 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.02 0.91 8.05 -2.39 -0.02 0.89 16 46 H 0.37 20.43 7.52 -92.71 -0.70 19.73 16 47 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 48 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.09 1.84 7.95 -2.39 -0.02 1.82 16 Total: -1.00 -75.50 404.88 2.35 -73.15 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -0.50 Total: 25.96 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 6.10 Total: 3.90 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -5.21 Total: -133.92 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.06 Total: -17.87 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -75.50 2.35 -73.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278563632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.073 kcal (2) G-P(sol) polarization free energy of solvation -75.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds