Wall clock time and date at job start Tue Mar 31 2020 20:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46786 * 2 1 4 4 C 1.52994 * 109.47265 * 239.99522 * 2 1 3 5 5 N 1.46504 * 109.46936 * 119.99429 * 2 1 3 6 6 N 1.28722 * 125.32147 * 0.02905 * 5 2 1 7 7 N 1.28973 * 108.98934 * 179.97438 * 6 5 2 8 8 C 1.34197 * 107.25391 * 0.02562 * 7 6 5 9 9 C 1.48002 * 126.70123 * 179.97438 * 8 7 6 10 10 O 1.21528 * 119.99867 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00084 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00221 * 179.97438 * 11 9 8 13 13 H 1.08994 * 110.01347 * 326.39297 * 12 11 9 14 14 C 1.54266 * 110.07202 * 87.80710 * 12 11 9 15 15 C 1.54887 * 104.19663 * 142.91903 * 14 12 11 16 16 C 1.54896 * 102.74695 * 322.05537 * 15 14 12 17 17 H 1.08996 * 110.59877 * 279.20672 * 16 15 14 18 18 C 1.53001 * 110.48395 * 156.62141 * 16 15 14 19 19 N 1.46490 * 109.47264 * 70.22508 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46685 * 269.99637 * 24 22 20 26 26 H 1.48494 * 109.47357 * 29.99716 * 24 22 20 27 27 H 1.48502 * 109.47120 * 150.00435 * 24 22 20 28 28 C 1.53878 * 110.03263 * 204.99763 * 12 11 9 29 29 N 1.28867 * 125.31824 * 180.25601 * 5 2 1 30 30 H 1.09004 * 109.47247 * 300.00125 * 1 2 3 31 31 H 1.08999 * 109.47325 * 60.00555 * 1 2 3 32 32 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46865 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47085 * 299.99391 * 3 2 1 35 35 H 1.08991 * 109.47583 * 60.00171 * 3 2 1 36 36 H 1.09000 * 109.47336 * 300.00379 * 4 2 1 37 37 H 1.09009 * 109.46881 * 59.99757 * 4 2 1 38 38 H 1.09000 * 109.47096 * 180.02562 * 4 2 1 39 39 H 0.97008 * 120.00017 * 359.97438 * 11 9 8 40 40 H 1.09001 * 110.49014 * 261.59896 * 14 12 11 41 41 H 1.09003 * 110.48847 * 24.10977 * 14 12 11 42 42 H 1.09003 * 110.75441 * 203.74886 * 15 14 12 43 43 H 1.08995 * 110.76068 * 80.37027 * 15 14 12 44 44 H 1.09003 * 109.46836 * 310.22215 * 18 16 15 45 45 H 1.08999 * 109.47071 * 190.23254 * 18 16 15 46 46 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 47 47 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 48 48 H 1.08997 * 110.02979 * 121.38317 * 28 12 11 49 49 H 1.08995 * 110.03211 * 359.95004 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1963 6 7 1.2762 -1.2168 2.1069 7 7 2.0306 -1.7400 3.0127 8 6 3.3029 -1.5258 2.6434 9 6 4.5189 -1.9471 3.3743 10 8 5.6181 -1.6868 2.9260 11 7 4.4073 -2.6194 4.5371 12 6 5.6110 -3.0369 5.2603 13 1 6.4039 -3.2830 4.5542 14 6 6.0770 -1.9115 6.2069 15 6 6.5917 -2.6594 7.4618 16 6 5.5838 -3.8274 7.6009 17 1 4.6686 -3.4885 8.0862 18 6 6.2083 -4.9828 8.3857 19 7 6.3608 -4.5934 9.7897 20 6 6.9013 -5.4729 10.6894 21 1 7.2156 -6.4535 10.3639 22 6 7.0453 -5.1041 12.0199 23 7 6.6618 -3.9091 12.4167 24 14 7.7833 -6.3036 13.2470 25 1 6.7015 -7.1234 13.8496 26 1 8.7487 -7.1921 12.5515 27 1 8.4861 -5.5490 14.3156 28 6 5.2974 -4.2551 6.1466 29 7 3.2580 -0.8624 1.5034 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 -1.7490 -1.2491 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 3.5299 -2.8268 4.8952 40 1 6.8816 -1.3363 5.7488 41 1 5.2422 -1.2595 6.4646 42 1 6.5565 -2.0125 8.3385 43 1 7.6010 -3.0374 7.2994 44 1 7.1859 -5.2204 7.9663 45 1 5.5622 -5.8581 8.3195 46 1 6.0782 -3.7128 10.0822 47 1 6.2790 -3.2861 11.7794 48 1 5.9383 -5.0924 5.8706 49 1 4.2495 -4.5351 6.0393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278563633.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:48 Heat of formation + Delta-G solvation = 90.213946 kcal Electronic energy + Delta-G solvation = -28502.853698 eV Core-core repulsion = 24503.011869 eV Total energy + Delta-G solvation = -3999.841829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.81274 -40.14078 -38.31826 -37.96528 -35.09392 -34.01960 -33.61329 -32.76059 -31.02549 -28.75597 -28.40398 -28.26811 -27.89063 -25.46420 -24.88114 -23.97264 -22.37648 -21.51844 -21.11973 -20.40673 -19.72448 -18.35727 -17.79066 -17.21222 -17.14275 -16.56993 -15.37491 -15.16786 -15.09283 -14.87481 -14.66993 -14.36898 -14.06251 -13.79202 -13.63266 -13.57354 -13.29575 -13.21666 -13.07696 -13.02972 -12.62041 -12.55680 -12.26938 -12.24188 -11.95857 -11.86021 -11.45147 -11.38481 -11.33260 -10.92950 -10.80078 -10.73358 -10.70136 -10.50814 -10.47962 -10.29537 -10.22082 -9.97038 -9.27065 -9.11397 -8.82118 -6.93833 -6.05759 -3.04482 0.65300 1.12261 1.23377 2.53953 2.83210 3.48176 3.54713 3.59890 3.68628 3.73839 3.79663 3.90911 4.20351 4.60545 4.65128 4.70997 4.72630 4.73289 4.76712 4.89251 4.89689 4.93185 4.94913 4.99657 5.18185 5.30028 5.37577 5.45150 5.48440 5.51011 5.57261 5.57628 5.67348 5.70048 5.81695 5.83563 6.01857 6.06539 6.12119 6.24549 6.40902 6.47662 6.53547 6.76525 6.89488 7.13201 7.73355 7.86359 7.88865 8.81125 9.29361 10.15701 10.31134 11.43171 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.035516 B = 0.001695 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.180492 B =16519.678308 C =16693.532938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.161 4.161 5 N -0.125 5.125 6 N -0.054 5.054 7 N -0.256 5.256 8 C 0.126 3.874 9 C 0.616 3.384 10 O -0.509 6.509 11 N -0.697 5.697 12 C 0.142 3.858 13 H 0.096 0.904 14 C -0.135 4.135 15 C -0.110 4.110 16 C -0.099 4.099 17 H 0.075 0.925 18 C 0.165 3.835 19 N -0.743 5.743 20 C -0.330 4.330 21 H 0.064 0.936 22 C -0.047 4.047 23 N -0.946 5.946 24 Si 1.083 2.917 25 H -0.296 1.296 26 H -0.295 1.295 27 H -0.288 1.288 28 C -0.122 4.122 29 N -0.245 5.245 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.410 0.590 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.021 0.979 45 H 0.018 0.982 46 H 0.367 0.633 47 H 0.255 0.745 48 H 0.080 0.920 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.332 9.960 -30.952 35.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.219 4.219 5 N -0.040 5.040 6 N -0.047 5.047 7 N -0.131 5.131 8 C -0.158 4.158 9 C 0.396 3.604 10 O -0.380 6.380 11 N -0.350 5.350 12 C 0.039 3.961 13 H 0.114 0.886 14 C -0.173 4.173 15 C -0.148 4.148 16 C -0.118 4.118 17 H 0.094 0.906 18 C 0.038 3.962 19 N -0.388 5.388 20 C -0.461 4.461 21 H 0.082 0.918 22 C -0.245 4.245 23 N -0.592 5.592 24 Si 0.914 3.086 25 H -0.224 1.224 26 H -0.222 1.222 27 H -0.214 1.214 28 C -0.161 4.161 29 N -0.098 5.098 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.247 0.753 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.039 0.961 45 H 0.036 0.964 46 H 0.200 0.800 47 H 0.066 0.934 48 H 0.099 0.901 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.609 9.770 -29.893 33.883 hybrid contribution -0.590 0.298 -1.316 1.472 sum -13.199 10.068 -31.209 35.350 Atomic orbital electron populations 1.22121 0.89675 1.04816 1.04567 1.21559 0.96702 0.92910 0.79275 1.22270 1.03572 0.91777 1.04318 1.22268 1.03553 1.01150 0.94932 1.50785 1.00904 1.34157 1.18106 1.78890 1.21545 1.08761 0.95456 1.76150 1.00064 1.17539 1.19341 1.25368 0.94609 1.02305 0.93561 1.16126 0.84599 0.78886 0.80835 1.90854 1.25264 1.54593 1.67327 1.46003 1.11316 1.56102 1.21542 1.21875 0.86095 0.94688 0.93461 0.88602 1.22817 1.01122 0.97360 0.96046 1.22469 0.99082 0.96604 0.96685 1.22183 0.99015 0.96568 0.94006 0.90641 1.20632 0.96595 0.93705 0.85274 1.42351 1.76353 1.16495 1.03649 1.20077 1.37337 0.96905 0.91796 0.91805 1.25765 1.01645 1.00740 0.96301 1.70848 1.44943 1.06633 1.36743 0.83191 0.75797 0.74084 0.75525 1.22377 1.22195 1.21419 1.22438 1.02224 0.96678 0.94754 1.74987 1.02736 1.16900 1.15155 0.90423 0.88968 0.90435 0.90172 0.88836 0.91214 0.91238 0.88834 0.90184 0.75330 0.91154 0.91251 0.91055 0.90989 0.96124 0.96420 0.80022 0.93410 0.90141 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 7.90 37.16 0.29 -0.20 16 2 C 0.18 0.90 1.30 -131.82 -0.17 0.72 16 3 C -0.16 -0.63 8.66 37.16 0.32 -0.31 16 4 C -0.16 -0.61 8.66 37.15 0.32 -0.29 16 5 N -0.12 -1.17 3.72 0.52 0.00 -1.17 16 6 N -0.05 -0.58 12.21 60.35 0.74 0.15 16 7 N -0.26 -3.12 12.26 32.10 0.39 -2.72 16 8 C 0.13 1.60 8.14 -156.24 -1.27 0.33 16 9 C 0.62 8.27 7.83 -12.26 -0.10 8.17 16 10 O -0.51 -8.24 16.75 5.34 0.09 -8.15 16 11 N -0.70 -8.05 5.03 -53.62 -0.27 -8.32 16 12 C 0.14 1.74 3.24 -66.81 -0.22 1.52 16 13 H 0.10 1.23 7.56 -51.93 -0.39 0.84 16 14 C -0.13 -1.75 6.53 -25.07 -0.16 -1.92 16 15 C -0.11 -1.67 6.19 -24.74 -0.15 -1.83 16 16 C -0.10 -1.54 2.89 -88.96 -0.26 -1.80 16 17 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 18 C 0.17 3.34 5.54 -4.05 -0.02 3.32 16 19 N -0.74 -18.94 5.49 -59.91 -0.33 -19.27 16 20 C -0.33 -9.51 9.99 -15.06 -0.15 -9.66 16 21 H 0.06 1.82 7.83 -52.49 -0.41 1.40 16 22 C -0.05 -1.40 5.50 -17.43 -0.10 -1.49 16 23 N -0.95 -29.67 13.70 55.49 0.76 -28.91 16 24 Si 1.08 26.41 29.92 -169.99 -5.09 21.33 16 25 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 28 C -0.12 -1.51 6.14 -25.61 -0.16 -1.67 16 29 N -0.24 -2.91 11.85 32.11 0.38 -2.52 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.10 8.14 -51.92 -0.42 -0.33 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.41 4.14 8.07 -40.82 -0.33 3.81 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.07 1.14 7.96 -51.93 -0.41 0.72 16 44 H 0.02 0.43 8.02 -51.93 -0.42 0.01 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.37 9.51 6.47 -40.82 -0.26 9.25 16 47 H 0.25 7.86 6.77 -40.82 -0.28 7.58 16 48 H 0.08 0.97 7.84 -51.93 -0.41 0.57 16 49 H 0.07 0.79 7.62 -51.93 -0.40 0.40 16 LS Contribution 402.81 15.07 6.07 6.07 Total: -1.00 -35.69 402.81 -7.08 -42.78 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -8.02 Total: 5.85 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.82 Total: -5.10 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: 1.67 Total: -62.77 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 14 Polarization: 26.41 SS G_CDS: -5.09 Total: 21.33 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.69 -7.08 -42.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278563633.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.992 kcal (2) G-P(sol) polarization free energy of solvation -35.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds