Wall clock time and date at job start Tue Mar 31 2020 20:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46786 * 2 1 4 4 C 1.52994 * 109.47265 * 239.99522 * 2 1 3 5 5 N 1.46504 * 109.46936 * 119.99429 * 2 1 3 6 6 N 1.28722 * 125.32147 * 0.02905 * 5 2 1 7 7 N 1.28973 * 108.98934 * 179.97438 * 6 5 2 8 8 C 1.34197 * 107.25391 * 0.02562 * 7 6 5 9 9 C 1.48002 * 126.70123 * 179.97438 * 8 7 6 10 10 O 1.21528 * 119.99867 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00084 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00221 * 179.97438 * 11 9 8 13 13 H 1.08994 * 110.01347 * 326.39297 * 12 11 9 14 14 C 1.54266 * 110.07202 * 87.80710 * 12 11 9 15 15 C 1.54887 * 104.19663 * 142.91903 * 14 12 11 16 16 C 1.54896 * 102.74695 * 322.05537 * 15 14 12 17 17 H 1.08996 * 110.59877 * 279.20672 * 16 15 14 18 18 C 1.53001 * 110.48395 * 156.62141 * 16 15 14 19 19 N 1.46490 * 109.47264 * 70.22508 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46685 * 269.99637 * 24 22 20 26 26 H 1.48494 * 109.47357 * 29.99716 * 24 22 20 27 27 H 1.48502 * 109.47120 * 150.00435 * 24 22 20 28 28 C 1.53878 * 110.03263 * 204.99763 * 12 11 9 29 29 N 1.28867 * 125.31824 * 180.25601 * 5 2 1 30 30 H 1.09004 * 109.47247 * 300.00125 * 1 2 3 31 31 H 1.08999 * 109.47325 * 60.00555 * 1 2 3 32 32 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46865 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47085 * 299.99391 * 3 2 1 35 35 H 1.08991 * 109.47583 * 60.00171 * 3 2 1 36 36 H 1.09000 * 109.47336 * 300.00379 * 4 2 1 37 37 H 1.09009 * 109.46881 * 59.99757 * 4 2 1 38 38 H 1.09000 * 109.47096 * 180.02562 * 4 2 1 39 39 H 0.97008 * 120.00017 * 359.97438 * 11 9 8 40 40 H 1.09001 * 110.49014 * 261.59896 * 14 12 11 41 41 H 1.09003 * 110.48847 * 24.10977 * 14 12 11 42 42 H 1.09003 * 110.75441 * 203.74886 * 15 14 12 43 43 H 1.08995 * 110.76068 * 80.37027 * 15 14 12 44 44 H 1.09003 * 109.46836 * 310.22215 * 18 16 15 45 45 H 1.08999 * 109.47071 * 190.23254 * 18 16 15 46 46 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 47 47 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 48 48 H 1.08997 * 110.02979 * 121.38317 * 28 12 11 49 49 H 1.08995 * 110.03211 * 359.95004 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1963 6 7 1.2762 -1.2168 2.1069 7 7 2.0306 -1.7400 3.0127 8 6 3.3029 -1.5258 2.6434 9 6 4.5189 -1.9471 3.3743 10 8 5.6181 -1.6868 2.9260 11 7 4.4073 -2.6194 4.5371 12 6 5.6110 -3.0369 5.2603 13 1 6.4039 -3.2830 4.5542 14 6 6.0770 -1.9115 6.2069 15 6 6.5917 -2.6594 7.4618 16 6 5.5838 -3.8274 7.6009 17 1 4.6686 -3.4885 8.0862 18 6 6.2083 -4.9828 8.3857 19 7 6.3608 -4.5934 9.7897 20 6 6.9013 -5.4729 10.6894 21 1 7.2156 -6.4535 10.3639 22 6 7.0453 -5.1041 12.0199 23 7 6.6618 -3.9091 12.4167 24 14 7.7833 -6.3036 13.2470 25 1 6.7015 -7.1234 13.8496 26 1 8.7487 -7.1921 12.5515 27 1 8.4861 -5.5490 14.3156 28 6 5.2974 -4.2551 6.1466 29 7 3.2580 -0.8624 1.5034 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 -1.7490 -1.2491 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 3.5299 -2.8268 4.8952 40 1 6.8816 -1.3363 5.7488 41 1 5.2422 -1.2595 6.4646 42 1 6.5565 -2.0125 8.3385 43 1 7.6010 -3.0374 7.2994 44 1 7.1859 -5.2204 7.9663 45 1 5.5622 -5.8581 8.3195 46 1 6.0782 -3.7128 10.0822 47 1 6.2790 -3.2861 11.7794 48 1 5.9383 -5.0924 5.8706 49 1 4.2495 -4.5351 6.0393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278563633.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:47 Heat of formation + Delta-G solvation = 65.122841 kcal Electronic energy + Delta-G solvation = -28503.941730 eV Core-core repulsion = 24503.011869 eV Total energy + Delta-G solvation = -4000.929861 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.64547 -41.21245 -39.36945 -38.62959 -36.80113 -35.19252 -34.66107 -33.66098 -32.78580 -30.10407 -29.33966 -28.57217 -28.56061 -26.58603 -25.71191 -25.59809 -24.17965 -22.48662 -21.81726 -21.47319 -21.04275 -19.39065 -19.12786 -18.59444 -17.76741 -17.65807 -16.91466 -16.45317 -16.04600 -15.75328 -15.38806 -15.32052 -15.24040 -15.15160 -15.09825 -14.89389 -14.43546 -14.08205 -13.69140 -13.51462 -13.31444 -13.25375 -13.12559 -12.86934 -12.78057 -12.67120 -12.60532 -12.52993 -12.39000 -12.15193 -12.14304 -12.08686 -11.90064 -11.83697 -11.71107 -11.63375 -11.53208 -11.51456 -11.18925 -10.89605 -10.31057 -9.07687 -8.38864 -5.31664 -0.20968 0.20400 0.59925 1.59021 1.61664 1.70049 1.81537 1.84304 2.72166 2.74253 2.90624 3.40683 3.45999 3.47344 3.49670 3.56324 3.62273 3.81327 3.95365 3.99566 4.25843 4.33663 4.39091 4.41796 4.44137 4.50362 4.53851 4.55919 4.57282 4.58148 4.68738 4.70603 4.70992 4.76761 4.97522 4.99576 4.99995 5.07221 5.08817 5.13482 5.14609 5.19914 5.29154 5.39699 5.46485 5.60799 6.15395 6.51311 6.77341 6.99489 7.12216 8.03470 8.14031 9.13545 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.035516 B = 0.001695 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.180492 B =16519.678308 C =16693.532938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 C -0.158 4.158 4 C -0.157 4.157 5 N -0.109 5.109 6 N -0.058 5.058 7 N -0.267 5.267 8 C 0.112 3.888 9 C 0.619 3.381 10 O -0.541 6.541 11 N -0.684 5.684 12 C 0.150 3.850 13 H 0.095 0.905 14 C -0.125 4.125 15 C -0.108 4.108 16 C -0.090 4.090 17 H 0.072 0.928 18 C 0.163 3.837 19 N -0.756 5.756 20 C -0.335 4.335 21 H 0.065 0.935 22 C -0.106 4.106 23 N -0.976 5.976 24 Si 1.131 2.869 25 H -0.284 1.284 26 H -0.274 1.274 27 H -0.293 1.293 28 C -0.111 4.111 29 N -0.258 5.258 30 H 0.069 0.931 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.129 0.871 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.129 0.871 38 H 0.063 0.937 39 H 0.419 0.581 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.020 0.980 45 H 0.019 0.981 46 H 0.361 0.639 47 H 0.244 0.756 48 H 0.088 0.912 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.496 9.760 -32.996 37.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.081 3.919 3 C -0.216 4.216 4 C -0.216 4.216 5 N -0.026 5.026 6 N -0.050 5.050 7 N -0.141 5.141 8 C -0.172 4.172 9 C 0.400 3.600 10 O -0.415 6.415 11 N -0.337 5.337 12 C 0.046 3.954 13 H 0.113 0.887 14 C -0.164 4.164 15 C -0.146 4.146 16 C -0.109 4.109 17 H 0.090 0.910 18 C 0.037 3.963 19 N -0.400 5.400 20 C -0.467 4.467 21 H 0.083 0.917 22 C -0.297 4.297 23 N -0.624 5.624 24 Si 0.956 3.044 25 H -0.211 1.211 26 H -0.199 1.199 27 H -0.219 1.219 28 C -0.149 4.149 29 N -0.112 5.112 30 H 0.088 0.912 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.147 0.853 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.257 0.743 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.038 0.962 45 H 0.037 0.963 46 H 0.193 0.807 47 H 0.054 0.946 48 H 0.107 0.893 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.815 9.549 -31.977 36.119 hybrid contribution -0.290 0.409 -0.821 0.962 sum -14.105 9.958 -32.798 37.065 Atomic orbital electron populations 1.22185 0.87939 1.04809 1.05896 1.22223 0.98071 0.93362 0.78250 1.22313 1.02547 0.91085 1.05683 1.22310 1.02544 1.01172 0.95534 1.51337 1.00034 1.32826 1.18379 1.78822 1.21509 1.08977 0.95691 1.76110 0.99821 1.18155 1.20040 1.25219 0.94570 1.03309 0.94111 1.16199 0.84401 0.78490 0.80939 1.90833 1.26447 1.56025 1.68230 1.45887 1.11587 1.55309 1.20883 1.21732 0.86294 0.94193 0.93185 0.88729 1.22716 1.01218 0.97440 0.95011 1.22386 0.98716 0.96457 0.97065 1.22051 0.98448 0.95011 0.95417 0.90976 1.20812 0.96825 0.95495 0.83195 1.42571 1.76124 1.15893 1.05443 1.20448 1.36313 0.97322 0.92582 0.91655 1.27225 1.02208 1.01549 0.98731 1.70962 1.47015 1.07684 1.36748 0.82582 0.75751 0.72580 0.73528 1.21093 1.19885 1.21942 1.22340 1.03730 0.96778 0.92045 1.74954 1.04064 1.17076 1.15078 0.91214 0.85489 0.91090 0.91777 0.85277 0.92021 0.91881 0.85291 0.91766 0.74261 0.91112 0.90835 0.92811 0.91756 0.96217 0.96286 0.80709 0.94567 0.89327 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 7.90 71.98 0.57 -0.05 16 2 C 0.16 1.35 1.30 3.60 0.00 1.36 16 3 C -0.16 -0.96 8.66 71.98 0.62 -0.33 16 4 C -0.16 -0.89 8.66 71.98 0.62 -0.27 16 5 N -0.11 -1.97 3.72 -152.26 -0.57 -2.53 16 6 N -0.06 -1.21 12.21 37.02 0.45 -0.76 16 7 N -0.27 -6.37 12.26 -52.36 -0.64 -7.01 16 8 C 0.11 2.81 8.14 137.15 1.12 3.93 16 9 C 0.62 16.39 7.83 86.83 0.68 17.07 16 10 O -0.54 -17.51 16.75 -3.80 -0.06 -17.58 16 11 N -0.68 -15.05 5.03 -441.83 -2.22 -17.28 16 12 C 0.15 3.46 3.24 45.72 0.15 3.61 16 13 H 0.09 2.31 7.56 -2.39 -0.02 2.29 16 14 C -0.13 -3.18 6.53 31.67 0.21 -2.97 16 15 C -0.11 -3.28 6.19 31.89 0.20 -3.09 16 16 C -0.09 -2.76 2.89 -9.72 -0.03 -2.79 16 17 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 18 C 0.16 6.52 5.54 86.38 0.48 7.00 16 19 N -0.76 -38.91 5.49 -343.47 -1.89 -40.80 16 20 C -0.34 -19.35 9.99 84.03 0.84 -18.51 16 21 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 22 C -0.11 -6.29 5.50 84.86 0.47 -5.82 16 23 N -0.98 -62.14 13.70 21.65 0.30 -61.84 16 24 Si 1.13 52.93 29.92 68.60 2.05 54.98 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 28 C -0.11 -2.53 6.14 31.32 0.19 -2.34 16 29 N -0.26 -6.07 11.85 -52.31 -0.62 -6.69 16 30 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.13 -0.20 8.14 -2.38 -0.02 -0.22 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.42 7.85 8.07 -92.70 -0.75 7.10 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 1.82 8.05 -2.39 -0.02 1.80 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 2.04 7.96 -2.39 -0.02 2.02 16 44 H 0.02 0.80 8.02 -2.39 -0.02 0.79 16 45 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.36 19.19 6.47 -92.71 -0.60 18.59 16 47 H 0.24 15.47 6.77 -92.71 -0.63 14.84 16 48 H 0.09 1.95 7.84 -2.39 -0.02 1.93 16 49 H 0.09 1.79 7.62 -2.39 -0.02 1.77 16 Total: -1.00 -77.98 402.81 2.67 -75.30 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.24 Total: 27.41 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 6.12 Total: -3.20 kcal Atomic # 7 Polarization: -131.72 SS G_CDS: -5.19 Total: -136.91 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.06 Total: -17.58 kcal Atomic # 14 Polarization: 52.93 SS G_CDS: 2.05 Total: 54.98 kcal Total: -77.98 2.67 -75.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278563633.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.426 kcal (2) G-P(sol) polarization free energy of solvation -77.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds