Wall clock time and date at job start Tue Mar 31 2020 20:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47283 * 2 1 4 4 C 1.53000 * 109.47167 * 240.00383 * 2 1 3 5 5 N 1.46498 * 109.47493 * 119.99979 * 2 1 3 6 6 N 1.28719 * 125.31795 * 0.02706 * 5 2 1 7 7 N 1.28984 * 108.99106 * 179.97438 * 6 5 2 8 8 C 1.34187 * 107.24881 * 359.97438 * 7 6 5 9 9 C 1.48008 * 126.69835 * 180.02562 * 8 7 6 10 10 O 1.21533 * 120.00028 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99670 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72365 * 11 9 8 13 13 H 1.08997 * 110.43622 * 34.57329 * 12 11 9 14 14 C 1.54273 * 110.48808 * 272.03763 * 12 11 9 15 15 C 1.53876 * 106.59791 * 217.71332 * 14 12 11 16 16 C 1.54266 * 106.59878 * 359.97438 * 15 14 12 17 17 H 1.09002 * 110.48354 * 264.93144 * 16 15 14 18 18 C 1.52995 * 110.48626 * 142.42320 * 16 15 14 19 19 N 1.46500 * 109.47591 * 66.45371 * 18 16 15 20 20 C 1.36928 * 120.00562 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99959 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00446 * 179.97438 * 20 19 18 23 23 N 1.31612 * 119.99881 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00189 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47405 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47463 * 119.99842 * 24 22 20 27 27 H 1.48506 * 109.47078 * 240.00147 * 24 22 20 28 28 C 1.54888 * 110.48835 * 157.12137 * 12 11 9 29 29 N 1.28870 * 125.32323 * 180.33843 * 5 2 1 30 30 H 1.09002 * 109.47165 * 299.99863 * 1 2 3 31 31 H 1.08996 * 109.47151 * 59.99782 * 1 2 3 32 32 H 1.08997 * 109.47190 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46885 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47205 * 300.00185 * 3 2 1 35 35 H 1.09002 * 109.46908 * 59.99979 * 3 2 1 36 36 H 1.09005 * 109.47057 * 299.99886 * 4 2 1 37 37 H 1.08996 * 109.47674 * 59.99596 * 4 2 1 38 38 H 1.09005 * 109.47357 * 180.02562 * 4 2 1 39 39 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 40 40 H 1.09004 * 110.03031 * 336.99137 * 14 12 11 41 41 H 1.08994 * 110.03578 * 98.37663 * 14 12 11 42 42 H 1.09002 * 110.03056 * 119.28433 * 15 14 12 43 43 H 1.08996 * 110.03266 * 240.66324 * 15 14 12 44 44 H 1.09002 * 109.47371 * 186.45025 * 18 16 15 45 45 H 1.09003 * 109.47331 * 306.45068 * 18 16 15 46 46 H 0.97003 * 119.99594 * 359.97438 * 19 18 16 47 47 H 0.96999 * 120.00371 * 179.97438 * 23 22 20 48 48 H 1.09006 * 110.75588 * 274.93743 * 28 12 11 49 49 H 1.09000 * 110.75836 * 38.30067 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 1.2763 -1.2169 2.1067 7 7 2.0308 -1.7403 3.0125 8 6 3.3029 -1.5270 2.6426 9 6 4.5191 -1.9497 3.3727 10 8 5.6183 -1.6902 2.9238 11 7 4.4074 -2.6223 4.5352 12 6 5.6111 -3.0460 5.2548 13 1 6.4060 -2.3103 5.1330 14 6 6.0769 -4.4309 4.7597 15 6 6.5872 -5.1911 5.9964 16 6 6.4144 -4.2414 7.1997 17 1 7.3400 -3.6995 7.3940 18 6 5.9828 -5.0239 8.4416 19 7 7.0675 -5.9162 8.8581 20 6 6.9089 -6.7215 9.9542 21 1 5.9844 -6.6985 10.5120 22 6 7.9365 -7.5674 10.3485 23 7 9.0630 -7.5958 9.6685 24 14 7.7205 -8.6654 11.8442 25 1 6.3732 -8.4459 12.4290 26 1 7.8589 -10.0872 11.4387 27 1 8.7578 -8.3354 12.8544 28 6 5.2975 -3.2618 6.7562 29 7 3.2581 -0.8612 1.5040 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1300 -0.7216 -1.2491 39 1 3.5301 -2.8298 4.8933 40 1 5.2410 -4.9673 4.3104 41 1 6.8809 -4.3165 4.0327 42 1 5.9991 -6.0964 6.1471 43 1 7.6393 -5.4464 5.8698 44 1 5.7551 -4.3276 9.2488 45 1 5.0960 -5.6136 8.2095 46 1 7.8977 -5.9371 8.3569 47 1 9.7812 -8.1866 9.9442 48 1 5.3653 -2.3219 7.3040 49 1 4.3142 -3.7146 6.8842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278563634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:53 Heat of formation + Delta-G solvation = 89.093996 kcal Electronic energy + Delta-G solvation = -28417.140796 eV Core-core repulsion = 24417.250402 eV Total energy + Delta-G solvation = -3999.890394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.79730 -40.06556 -38.27627 -37.90953 -34.93546 -33.95148 -33.50726 -32.71869 -31.03833 -28.74685 -28.40704 -28.25589 -27.92849 -25.52889 -24.87377 -24.15526 -22.15589 -21.49966 -21.10383 -20.60909 -19.22029 -18.30565 -17.77671 -17.16432 -17.04297 -16.41129 -15.60564 -15.12319 -15.01074 -14.76543 -14.60669 -14.44483 -14.30272 -13.61690 -13.51954 -13.24022 -13.22048 -13.16542 -13.06582 -12.81456 -12.60727 -12.54669 -12.23004 -12.04608 -11.85886 -11.78475 -11.60630 -11.42714 -11.36703 -11.05174 -10.84171 -10.75716 -10.71616 -10.49769 -10.45106 -10.32889 -10.06083 -9.87934 -9.63968 -9.21836 -8.82813 -6.86230 -5.72113 -3.00121 0.66992 1.14035 1.24777 2.56068 2.85842 3.46279 3.49396 3.51819 3.54108 3.70424 3.80700 3.91970 4.21802 4.61162 4.67398 4.72589 4.74025 4.74416 4.80734 4.90322 4.92087 4.94224 4.95873 5.07038 5.19433 5.31332 5.38718 5.48038 5.50418 5.58373 5.62289 5.66350 5.71409 5.71642 5.86106 5.93671 6.08054 6.17615 6.30851 6.37125 6.41272 6.61261 6.67559 6.85918 6.98921 7.16794 7.74749 7.76053 7.90984 8.47113 9.58295 10.17633 10.52262 11.50928 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.037097 B = 0.001675 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.604856 B =16716.568182 C =17007.631016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.161 4.161 5 N -0.125 5.125 6 N -0.054 5.054 7 N -0.256 5.256 8 C 0.126 3.874 9 C 0.616 3.384 10 O -0.508 6.508 11 N -0.697 5.697 12 C 0.140 3.860 13 H 0.099 0.901 14 C -0.135 4.135 15 C -0.112 4.112 16 C -0.094 4.094 17 H 0.077 0.923 18 C 0.161 3.839 19 N -0.732 5.732 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.121 4.121 29 N -0.245 5.245 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.410 0.590 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.018 0.982 45 H 0.019 0.981 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.074 0.926 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.496 19.170 -24.248 36.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.219 4.219 5 N -0.040 5.040 6 N -0.047 5.047 7 N -0.131 5.131 8 C -0.158 4.158 9 C 0.395 3.605 10 O -0.379 6.379 11 N -0.348 5.348 12 C 0.037 3.963 13 H 0.117 0.883 14 C -0.173 4.173 15 C -0.150 4.150 16 C -0.114 4.114 17 H 0.096 0.904 18 C 0.033 3.967 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.159 4.159 29 N -0.098 5.098 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.246 0.754 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.036 0.964 45 H 0.037 0.963 46 H 0.218 0.782 47 H 0.064 0.936 48 H 0.092 0.908 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.367 19.363 -24.555 36.266 hybrid contribution 0.218 -0.844 0.881 1.239 sum -18.149 18.519 -23.674 35.111 Atomic orbital electron populations 1.22116 0.89693 1.04820 1.04535 1.21554 0.96683 0.92899 0.79304 1.22270 1.03580 0.91783 1.04282 1.22272 1.03581 1.01171 0.94914 1.50777 1.00916 1.34161 1.18104 1.78887 1.21565 1.08813 0.95447 1.76146 1.00069 1.17526 1.19367 1.25377 0.94610 1.02195 0.93598 1.16125 0.84587 0.78760 0.81001 1.90862 1.25253 1.55115 1.66704 1.45844 1.11376 1.55842 1.21760 1.22106 0.86184 0.96817 0.91210 0.88346 1.22584 1.01098 0.94817 0.98825 1.22097 1.01959 0.98431 0.92478 1.22119 0.97849 0.95621 0.95785 0.90409 1.20672 0.91955 0.91689 0.92350 1.42353 1.15181 1.46600 1.33472 1.19289 0.99444 1.14623 1.03517 0.91185 1.24734 0.96347 1.00530 0.99515 1.69667 1.05258 1.41983 1.41312 0.86127 0.77164 0.80416 0.82556 1.20597 1.21934 1.21930 1.22788 1.00195 1.00145 0.92806 1.74994 1.02711 1.16914 1.15164 0.90441 0.88989 0.90428 0.90160 0.88854 0.91242 0.91219 0.88845 0.90165 0.75354 0.91628 0.91393 0.90992 0.91362 0.96431 0.96273 0.78222 0.93625 0.90775 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 7.90 37.16 0.29 -0.18 16 2 C 0.18 0.88 1.30 -131.82 -0.17 0.71 16 3 C -0.16 -0.61 8.65 37.16 0.32 -0.29 16 4 C -0.16 -0.62 8.67 37.16 0.32 -0.30 16 5 N -0.12 -1.16 3.72 0.52 0.00 -1.16 16 6 N -0.05 -0.58 12.21 60.35 0.74 0.16 16 7 N -0.26 -3.07 12.26 32.10 0.39 -2.68 16 8 C 0.13 1.60 8.14 -156.24 -1.27 0.33 16 9 C 0.62 8.27 7.84 -12.25 -0.10 8.17 16 10 O -0.51 -8.30 16.78 5.34 0.09 -8.21 16 11 N -0.70 -7.99 5.10 -53.09 -0.27 -8.26 16 12 C 0.14 1.73 3.18 -66.27 -0.21 1.52 16 13 H 0.10 1.30 7.61 -51.93 -0.40 0.90 16 14 C -0.13 -1.78 6.54 -25.61 -0.17 -1.95 16 15 C -0.11 -1.73 6.05 -25.61 -0.15 -1.88 16 16 C -0.09 -1.49 2.92 -88.88 -0.26 -1.75 16 17 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 18 C 0.16 3.20 5.58 -4.04 -0.02 3.18 16 19 N -0.73 -18.59 5.44 -59.91 -0.33 -18.92 16 20 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 23 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 24 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 28 C -0.12 -1.48 5.95 -24.65 -0.15 -1.63 16 29 N -0.24 -2.90 11.85 32.11 0.38 -2.52 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.41 4.02 8.30 -40.82 -0.34 3.68 16 40 H 0.06 0.84 8.04 -51.93 -0.42 0.42 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.21 7.78 -51.93 -0.40 0.80 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 46 H 0.38 10.24 7.52 -40.82 -0.31 9.94 16 47 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.08 0.88 7.94 -51.93 -0.41 0.47 16 LS Contribution 404.86 15.07 6.10 6.10 Total: -1.00 -34.52 404.86 -7.16 -41.68 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.16 Total: 5.44 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.81 Total: -1.49 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 1.64 Total: -61.16 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.52 -7.16 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278563634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.775 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds