Wall clock time and date at job start Tue Mar 31 2020 20:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47283 * 2 1 4 4 C 1.53000 * 109.47167 * 240.00383 * 2 1 3 5 5 N 1.46498 * 109.47493 * 119.99979 * 2 1 3 6 6 N 1.28719 * 125.31795 * 0.02706 * 5 2 1 7 7 N 1.28984 * 108.99106 * 179.97438 * 6 5 2 8 8 C 1.34187 * 107.24881 * 359.97438 * 7 6 5 9 9 C 1.48008 * 126.69835 * 180.02562 * 8 7 6 10 10 O 1.21533 * 120.00028 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99670 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72365 * 11 9 8 13 13 H 1.08997 * 110.43622 * 34.57329 * 12 11 9 14 14 C 1.54273 * 110.48808 * 272.03763 * 12 11 9 15 15 C 1.53876 * 106.59791 * 217.71332 * 14 12 11 16 16 C 1.54266 * 106.59878 * 359.97438 * 15 14 12 17 17 H 1.09002 * 110.48354 * 264.93144 * 16 15 14 18 18 C 1.52995 * 110.48626 * 142.42320 * 16 15 14 19 19 N 1.46500 * 109.47591 * 66.45371 * 18 16 15 20 20 C 1.36928 * 120.00562 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99959 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00446 * 179.97438 * 20 19 18 23 23 N 1.31612 * 119.99881 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00189 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47405 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47463 * 119.99842 * 24 22 20 27 27 H 1.48506 * 109.47078 * 240.00147 * 24 22 20 28 28 C 1.54888 * 110.48835 * 157.12137 * 12 11 9 29 29 N 1.28870 * 125.32323 * 180.33843 * 5 2 1 30 30 H 1.09002 * 109.47165 * 299.99863 * 1 2 3 31 31 H 1.08996 * 109.47151 * 59.99782 * 1 2 3 32 32 H 1.08997 * 109.47190 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46885 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47205 * 300.00185 * 3 2 1 35 35 H 1.09002 * 109.46908 * 59.99979 * 3 2 1 36 36 H 1.09005 * 109.47057 * 299.99886 * 4 2 1 37 37 H 1.08996 * 109.47674 * 59.99596 * 4 2 1 38 38 H 1.09005 * 109.47357 * 180.02562 * 4 2 1 39 39 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 40 40 H 1.09004 * 110.03031 * 336.99137 * 14 12 11 41 41 H 1.08994 * 110.03578 * 98.37663 * 14 12 11 42 42 H 1.09002 * 110.03056 * 119.28433 * 15 14 12 43 43 H 1.08996 * 110.03266 * 240.66324 * 15 14 12 44 44 H 1.09002 * 109.47371 * 186.45025 * 18 16 15 45 45 H 1.09003 * 109.47331 * 306.45068 * 18 16 15 46 46 H 0.97003 * 119.99594 * 359.97438 * 19 18 16 47 47 H 0.96999 * 120.00371 * 179.97438 * 23 22 20 48 48 H 1.09006 * 110.75588 * 274.93743 * 28 12 11 49 49 H 1.09000 * 110.75836 * 38.30067 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 1.2763 -1.2169 2.1067 7 7 2.0308 -1.7403 3.0125 8 6 3.3029 -1.5270 2.6426 9 6 4.5191 -1.9497 3.3727 10 8 5.6183 -1.6902 2.9238 11 7 4.4074 -2.6223 4.5352 12 6 5.6111 -3.0460 5.2548 13 1 6.4060 -2.3103 5.1330 14 6 6.0769 -4.4309 4.7597 15 6 6.5872 -5.1911 5.9964 16 6 6.4144 -4.2414 7.1997 17 1 7.3400 -3.6995 7.3940 18 6 5.9828 -5.0239 8.4416 19 7 7.0675 -5.9162 8.8581 20 6 6.9089 -6.7215 9.9542 21 1 5.9844 -6.6985 10.5120 22 6 7.9365 -7.5674 10.3485 23 7 9.0630 -7.5958 9.6685 24 14 7.7205 -8.6654 11.8442 25 1 6.3732 -8.4459 12.4290 26 1 7.8589 -10.0872 11.4387 27 1 8.7578 -8.3354 12.8544 28 6 5.2975 -3.2618 6.7562 29 7 3.2581 -0.8612 1.5040 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1300 -0.7216 -1.2491 39 1 3.5301 -2.8298 4.8933 40 1 5.2410 -4.9673 4.3104 41 1 6.8809 -4.3165 4.0327 42 1 5.9991 -6.0964 6.1471 43 1 7.6393 -5.4464 5.8698 44 1 5.7551 -4.3276 9.2488 45 1 5.0960 -5.6136 8.2095 46 1 7.8977 -5.9371 8.3569 47 1 9.7812 -8.1866 9.9442 48 1 5.3653 -2.3219 7.3040 49 1 4.3142 -3.7146 6.8842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278563634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:51 Heat of formation + Delta-G solvation = 64.911372 kcal Electronic energy + Delta-G solvation = -28418.189433 eV Core-core repulsion = 24417.250402 eV Total energy + Delta-G solvation = -4000.939031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.62204 -41.13843 -39.28691 -38.60800 -36.52230 -35.09162 -34.62820 -33.62750 -32.84001 -30.13966 -29.34206 -28.56321 -28.54525 -26.72156 -25.73484 -25.59330 -23.91372 -22.47058 -21.80340 -21.69081 -20.52340 -19.24358 -19.01089 -18.57393 -17.74239 -17.56802 -16.81500 -16.56740 -16.00517 -15.92027 -15.28782 -15.23215 -15.14801 -15.11964 -15.01835 -14.53316 -14.28679 -14.06348 -13.50013 -13.43018 -13.30037 -13.28162 -13.23640 -12.94219 -12.85334 -12.79819 -12.66096 -12.60856 -12.37463 -12.13173 -12.12214 -12.11007 -12.06492 -11.80493 -11.70518 -11.58474 -11.50211 -11.48803 -11.29921 -10.90587 -10.27266 -8.95349 -7.92691 -5.20666 -0.18585 0.22910 0.61889 1.48556 1.49289 1.59413 1.63540 1.84198 2.57923 2.76086 2.92579 3.40936 3.47592 3.52173 3.57455 3.62031 3.66039 3.88660 3.98360 4.18720 4.28233 4.37559 4.40766 4.48897 4.51653 4.51867 4.57351 4.59298 4.59681 4.66627 4.72295 4.72510 4.79656 4.93453 5.00517 5.01569 5.08891 5.10309 5.16387 5.17799 5.21603 5.24134 5.36281 5.46185 5.52859 5.58214 6.19485 6.30123 6.81234 7.01869 7.36313 8.14536 8.36974 9.31214 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.037097 B = 0.001675 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.604856 B =16716.568182 C =17007.631016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 C -0.158 4.158 4 C -0.158 4.158 5 N -0.109 5.109 6 N -0.057 5.057 7 N -0.265 5.265 8 C 0.112 3.888 9 C 0.619 3.381 10 O -0.542 6.542 11 N -0.682 5.682 12 C 0.148 3.852 13 H 0.093 0.907 14 C -0.126 4.126 15 C -0.107 4.107 16 C -0.089 4.089 17 H 0.071 0.929 18 C 0.159 3.841 19 N -0.745 5.745 20 C -0.243 4.243 21 H 0.076 0.924 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.973 3.027 25 H -0.265 1.265 26 H -0.294 1.294 27 H -0.294 1.294 28 C -0.107 4.107 29 N -0.259 5.259 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.128 0.872 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.129 0.871 38 H 0.063 0.937 39 H 0.421 0.579 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.374 0.626 47 H 0.250 0.750 48 H 0.090 0.910 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.929 20.410 -25.140 38.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.081 3.919 3 C -0.216 4.216 4 C -0.216 4.216 5 N -0.026 5.026 6 N -0.050 5.050 7 N -0.140 5.140 8 C -0.171 4.171 9 C 0.399 3.601 10 O -0.416 6.416 11 N -0.334 5.334 12 C 0.044 3.956 13 H 0.111 0.889 14 C -0.164 4.164 15 C -0.145 4.145 16 C -0.108 4.108 17 H 0.089 0.911 18 C 0.033 3.967 19 N -0.388 5.388 20 C -0.375 4.375 21 H 0.094 0.906 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.802 3.198 25 H -0.190 1.190 26 H -0.221 1.221 27 H -0.221 1.221 28 C -0.145 4.145 29 N -0.113 5.113 30 H 0.089 0.911 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.147 0.853 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.259 0.741 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.040 0.960 45 H 0.042 0.958 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.109 0.891 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.878 20.621 -25.434 38.833 hybrid contribution 0.881 -1.154 1.047 1.791 sum -19.997 19.466 -24.387 37.061 Atomic orbital electron populations 1.22180 0.87905 1.04789 1.05930 1.22214 0.98080 0.93379 0.78214 1.22312 1.02534 0.91025 1.05715 1.22314 1.02524 1.01161 0.95637 1.51323 1.00031 1.32856 1.18391 1.78818 1.21504 1.08987 0.95662 1.76106 0.99752 1.18080 1.20035 1.25201 0.94562 1.03220 0.94141 1.16210 0.84393 0.78364 0.81105 1.90841 1.26532 1.56614 1.67654 1.45691 1.11634 1.54968 1.21083 1.21935 0.86377 0.96025 0.91260 0.88887 1.22483 1.01202 0.95150 0.97598 1.21994 1.00757 0.98161 0.93605 1.21998 0.98905 0.95860 0.94064 0.91092 1.20848 0.90557 0.91225 0.94072 1.42582 1.16132 1.47198 1.32860 1.19707 0.99411 1.14395 1.03965 0.90583 1.25565 0.96299 1.02497 1.02653 1.69825 1.06072 1.43091 1.43142 0.85074 0.77564 0.78100 0.79036 1.18974 1.22146 1.22122 1.22694 0.99397 0.99934 0.92466 1.74962 1.04074 1.17117 1.15111 0.91072 0.85538 0.91153 0.91802 0.85332 0.91876 0.91967 0.85310 0.91824 0.74110 0.90837 0.91762 0.92408 0.93038 0.96015 0.95847 0.79433 0.94109 0.89103 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 7.90 71.98 0.57 -0.01 16 2 C 0.16 1.33 1.30 3.60 0.00 1.33 16 3 C -0.16 -0.89 8.65 71.98 0.62 -0.27 16 4 C -0.16 -0.94 8.67 71.98 0.62 -0.31 16 5 N -0.11 -1.94 3.72 -152.26 -0.57 -2.51 16 6 N -0.06 -1.18 12.21 37.02 0.45 -0.73 16 7 N -0.27 -6.18 12.26 -52.36 -0.64 -6.83 16 8 C 0.11 2.81 8.14 137.15 1.12 3.93 16 9 C 0.62 16.40 7.84 86.83 0.68 17.08 16 10 O -0.54 -17.81 16.78 -3.82 -0.06 -17.87 16 11 N -0.68 -14.83 5.10 -440.16 -2.24 -17.08 16 12 C 0.15 3.46 3.18 46.07 0.15 3.61 16 13 H 0.09 2.37 7.61 -2.39 -0.02 2.35 16 14 C -0.13 -3.25 6.54 31.32 0.20 -3.05 16 15 C -0.11 -3.33 6.05 31.32 0.19 -3.14 16 16 C -0.09 -2.75 2.92 -9.67 -0.03 -2.77 16 17 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 18 C 0.16 6.22 5.58 86.38 0.48 6.71 16 19 N -0.75 -38.16 5.44 -343.46 -1.87 -40.03 16 20 C -0.24 -13.73 9.99 84.04 0.84 -12.89 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 22 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 23 N -0.97 -60.32 13.06 21.65 0.28 -60.04 16 24 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 28 C -0.11 -2.40 5.95 31.94 0.19 -2.21 16 29 N -0.26 -6.07 11.85 -52.31 -0.62 -6.69 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.13 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.13 -0.20 8.14 -2.39 -0.02 -0.21 16 35 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.42 7.52 8.30 -92.71 -0.77 6.75 16 40 H 0.07 1.80 8.04 -2.38 -0.02 1.78 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 1.95 7.78 -2.39 -0.02 1.93 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.02 0.91 8.05 -2.39 -0.02 0.89 16 46 H 0.37 20.42 7.52 -92.71 -0.70 19.73 16 47 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 48 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 49 H 0.09 1.84 7.94 -2.39 -0.02 1.82 16 Total: -1.00 -75.47 404.86 2.36 -73.11 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -0.50 Total: 25.96 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 6.11 Total: 3.91 kcal Atomic # 7 Polarization: -128.68 SS G_CDS: -5.21 Total: -133.89 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.06 Total: -17.87 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -75.47 2.36 -73.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278563634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.021 kcal (2) G-P(sol) polarization free energy of solvation -75.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds