Wall clock time and date at job start Tue Mar 31 2020 19:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00101 * 2 1 4 4 C 1.52995 * 109.47325 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47240 * 65.00047 * 4 3 2 6 6 C 1.36936 * 119.99832 * 270.00441 * 5 4 3 7 7 H 1.08001 * 120.00278 * 145.87949 * 6 5 4 8 8 C 1.38813 * 119.99819 * 325.86889 * 6 5 4 9 9 N 1.31622 * 120.00279 * 336.95867 * 8 6 5 10 10 Si 1.86803 * 119.99983 * 156.95242 * 8 6 5 11 11 H 1.48510 * 109.46570 * 60.00531 * 10 8 6 12 12 H 1.48502 * 109.47259 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47361 * 300.00528 * 10 8 6 14 14 C 1.46496 * 120.00105 * 89.99778 * 5 4 3 15 15 C 1.53008 * 109.46982 * 89.41236 * 14 5 4 16 16 N 1.46496 * 109.46982 * 179.97438 * 15 14 5 17 17 C 1.34775 * 120.00186 * 180.02562 * 16 15 14 18 18 O 1.21291 * 119.99505 * 359.97438 * 17 16 15 19 19 C 1.50692 * 120.00610 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.42161 * 299.88450 * 19 17 16 21 21 C 1.53031 * 109.42716 * 179.97438 * 19 17 16 22 22 C 1.53389 * 109.71846 * 168.18168 * 21 19 17 23 23 C 1.50887 * 108.19398 * 50.54049 * 22 21 19 24 24 C 1.34564 * 128.32927 * 163.47729 * 23 22 21 25 25 N 1.35204 * 107.62211 * 180.09365 * 24 23 22 26 26 H 0.96994 * 126.00636 * 179.97438 * 25 24 23 27 27 N 1.40311 * 107.98689 * 359.96681 * 25 24 23 28 28 C 1.30125 * 108.13048 * 359.95287 * 27 25 24 29 29 C 1.50943 * 128.29046 * 180.34246 * 28 27 25 30 30 H 1.09003 * 109.46961 * 299.99501 * 1 2 3 31 31 H 1.08999 * 109.47445 * 59.99853 * 1 2 3 32 32 H 1.09000 * 109.47410 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47193 * 60.00084 * 3 2 1 34 34 H 1.09007 * 109.47316 * 300.00468 * 3 2 1 35 35 H 1.09010 * 109.47166 * 185.00096 * 4 3 2 36 36 H 1.08994 * 109.47090 * 304.99755 * 4 3 2 37 37 H 0.96997 * 119.99829 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.47571 * 209.40936 * 14 5 4 39 39 H 1.08995 * 109.47597 * 329.41404 * 14 5 4 40 40 H 1.08993 * 109.46922 * 299.99847 * 15 14 5 41 41 H 1.09001 * 109.46626 * 60.00071 * 15 14 5 42 42 H 0.97003 * 120.00630 * 359.97438 * 16 15 14 43 43 H 1.08998 * 109.43003 * 288.25877 * 21 19 17 44 44 H 1.08998 * 109.43044 * 48.16138 * 21 19 17 45 45 H 1.09002 * 109.71961 * 170.21077 * 22 21 19 46 46 H 1.09000 * 109.72126 * 290.82051 * 22 21 19 47 47 H 1.08002 * 126.19188 * 0.09142 * 24 23 22 48 48 H 1.09000 * 109.71641 * 43.44886 * 29 28 27 49 49 H 1.08998 * 109.71435 * 282.80398 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0967 -0.7970 -1.3369 7 1 3.8746 -1.3026 -2.2650 8 6 4.5050 -1.5272 -0.2292 9 7 5.1951 -0.9423 0.7269 10 14 4.0751 -3.3402 -0.0954 11 1 4.6620 -4.0742 -1.2453 12 1 4.6222 -3.8865 1.1724 13 1 2.5989 -3.5010 -0.1069 14 6 4.2863 1.4006 -2.4148 15 6 5.7631 1.7990 -2.3762 16 7 6.0739 2.6348 -3.5386 17 6 7.3243 3.1057 -3.7150 18 8 8.1921 2.8380 -2.9111 19 6 7.6439 3.9659 -4.9104 20 1 7.4432 3.4060 -5.8238 21 6 9.1211 4.3636 -4.8708 22 6 9.5267 4.9821 -6.2146 23 6 8.5235 6.0545 -6.5615 24 6 8.6389 7.0440 -7.4661 25 7 7.4953 7.7646 -7.4326 26 1 7.2946 8.5413 -7.9779 27 7 6.6499 7.1912 -6.4707 28 6 7.2633 6.1682 -5.9508 29 6 6.7675 5.2242 -4.8824 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.9785 2.1766 0.0889 36 1 3.8514 0.5683 0.8409 37 1 5.4800 -1.4525 1.5010 38 1 4.0844 0.8421 -3.3288 39 1 3.6674 2.2976 -2.3929 40 1 5.9649 2.3576 -1.4623 41 1 6.3820 0.9021 -2.3982 42 1 5.3799 2.8486 -4.1818 43 1 9.2796 5.0906 -4.0744 44 1 9.7297 3.4795 -4.6812 45 1 10.5208 5.4215 -6.1322 46 1 9.5271 4.2140 -6.9879 47 1 9.4909 7.2293 -8.1035 48 1 5.7304 4.9546 -5.0823 49 1 6.8420 5.7025 -3.9058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279055975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:21 Heat of formation + Delta-G solvation = 6.217123 kcal Electronic energy + Delta-G solvation = -29027.628190 eV Core-core repulsion = 24991.851234 eV Total energy + Delta-G solvation = -4035.776956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.71241 -39.55965 -37.24683 -36.30959 -35.61540 -34.06524 -32.44003 -31.39715 -30.86651 -29.41643 -28.67793 -27.24525 -25.63555 -25.13526 -23.69671 -22.56306 -21.76015 -21.24806 -20.23747 -19.79526 -18.97756 -17.83685 -16.92269 -16.60805 -15.72657 -15.56121 -15.49792 -15.01454 -15.00331 -14.54068 -14.44631 -14.19406 -13.95948 -13.89107 -13.61142 -13.48562 -13.20688 -12.99614 -12.76064 -12.53382 -12.04094 -11.83728 -11.65853 -11.55467 -11.29094 -11.12133 -10.98145 -10.90141 -10.73733 -10.63694 -10.45392 -10.40763 -10.07981 -9.91362 -9.69164 -9.63068 -9.42399 -8.80042 -8.66616 -8.51571 -8.36932 -6.58602 -5.68270 -3.21564 1.64592 2.48921 2.57006 2.98223 3.48907 3.53068 3.54178 3.62117 4.21546 4.46636 4.60715 4.72151 4.74025 4.76898 4.93877 5.11576 5.19476 5.30759 5.36498 5.41867 5.45151 5.55264 5.61234 5.74185 5.76656 5.81999 5.82892 5.96527 5.96880 6.05721 6.08784 6.10805 6.16669 6.24278 6.28067 6.36267 6.43597 6.62464 6.70077 6.82487 6.87996 7.02295 7.10078 7.42887 7.71665 7.90505 7.92188 8.10470 8.58490 8.62737 9.24731 9.90185 10.41961 11.33652 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.002302 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.968894 B =12158.379238 C =13255.250982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.048 3.952 4 C 0.138 3.862 5 N -0.570 5.570 6 C -0.246 4.246 7 H 0.059 0.941 8 C 0.019 3.981 9 N -0.889 5.889 10 Si 0.899 3.101 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.281 1.281 14 C 0.139 3.861 15 C 0.097 3.903 16 N -0.725 5.725 17 C 0.511 3.489 18 O -0.538 6.538 19 C -0.102 4.102 20 H 0.099 0.901 21 C -0.099 4.099 22 C -0.041 4.041 23 C -0.233 4.233 24 C 0.058 3.942 25 N -0.487 5.487 26 H 0.438 0.562 27 N -0.288 5.288 28 C 0.087 3.913 29 C -0.029 4.029 30 H 0.026 0.974 31 H 0.028 0.972 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.040 0.960 36 H 0.110 0.890 37 H 0.254 0.746 38 H 0.049 0.951 39 H 0.037 0.963 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.394 0.606 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.175 0.825 48 H 0.088 0.912 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.863 15.977 -15.181 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.031 4.031 4 C 0.011 3.989 5 N -0.290 5.290 6 C -0.375 4.375 7 H 0.077 0.923 8 C -0.181 4.181 9 N -0.532 5.532 10 Si 0.729 3.271 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.207 1.207 14 C 0.011 3.989 15 C -0.028 4.028 16 N -0.376 5.376 17 C 0.295 3.705 18 O -0.415 6.415 19 C -0.124 4.124 20 H 0.117 0.883 21 C -0.137 4.137 22 C -0.080 4.080 23 C -0.245 4.245 24 C -0.088 4.088 25 N -0.195 5.195 26 H 0.282 0.718 27 N -0.110 5.110 28 C -0.081 4.081 29 C -0.069 4.069 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.127 0.873 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.227 0.773 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.192 0.808 48 H 0.107 0.893 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.618 16.207 -14.408 21.843 hybrid contribution -0.213 -0.462 -0.585 0.776 sum 2.404 15.745 -14.993 21.874 Atomic orbital electron populations 1.22631 0.84355 1.01444 0.98345 1.88236 1.16449 1.27619 1.94795 1.23380 0.98782 0.84136 0.96771 1.21121 0.87595 0.96835 0.93340 1.43682 1.74425 1.02673 1.08175 1.18837 1.39185 0.81203 0.98296 0.92319 1.24969 0.96689 0.97753 0.98673 1.69941 1.35977 1.36217 1.11068 0.86439 0.78660 0.85332 0.76667 1.21160 1.21951 1.20731 1.21098 0.90906 0.94109 0.92772 1.22454 1.00273 0.93844 0.86228 1.46264 1.10587 1.52625 1.28112 1.20432 0.82760 0.80475 0.86785 1.90721 1.46607 1.58864 1.45295 1.21351 0.97473 0.95446 0.98156 0.88288 1.21383 0.93671 1.01733 0.96897 1.20049 0.96066 0.94731 0.97116 1.20202 0.98262 1.02646 1.03364 1.22067 0.91903 0.94090 1.00717 1.46328 1.12619 1.27248 1.33345 0.71821 1.77028 1.16681 1.11880 1.05405 1.22246 0.93343 0.94817 0.97730 1.20046 0.99194 0.91788 0.95864 0.95577 0.95337 0.90778 0.95700 0.95579 0.94167 0.87307 0.93594 0.93312 0.94503 0.92304 0.91030 0.77342 0.91147 0.90077 0.90889 0.91083 0.80752 0.89331 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.35 -7.81 10.18 -35.23 -0.36 -8.17 16 3 C 0.05 0.98 6.28 37.16 0.23 1.21 16 4 C 0.14 3.16 5.72 -4.05 -0.02 3.14 16 5 N -0.57 -13.64 2.43 -173.24 -0.42 -14.06 16 6 C -0.25 -6.63 8.98 -15.06 -0.14 -6.76 16 7 H 0.06 1.60 7.93 -52.49 -0.42 1.18 16 8 C 0.02 0.53 4.95 -17.43 -0.09 0.44 16 9 N -0.89 -25.73 11.33 55.49 0.63 -25.10 16 10 Si 0.90 22.35 29.61 -169.99 -5.03 17.32 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.14 2.69 5.78 -4.04 -0.02 2.67 16 15 C 0.10 1.89 6.00 -4.04 -0.02 1.86 16 16 N -0.72 -10.74 5.46 -60.30 -0.33 -11.07 16 17 C 0.51 7.82 7.14 -10.99 -0.08 7.74 16 18 O -0.54 -10.75 15.77 5.55 0.09 -10.66 16 19 C -0.10 -1.13 2.46 -91.57 -0.23 -1.36 16 20 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 21 C -0.10 -1.07 4.65 -26.51 -0.12 -1.19 16 22 C -0.04 -0.35 6.28 -27.59 -0.17 -0.52 16 23 C -0.23 -2.20 5.89 -104.98 -0.62 -2.82 16 24 C 0.06 0.42 11.95 -17.37 -0.21 0.21 16 25 N -0.49 -3.90 7.37 30.35 0.22 -3.68 16 26 H 0.44 2.03 8.96 -182.44 -1.64 0.40 16 27 N -0.29 -3.31 12.68 33.75 0.43 -2.88 16 28 C 0.09 0.96 7.10 -82.35 -0.58 0.38 16 29 C -0.03 -0.31 5.42 -27.57 -0.15 -0.46 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.85 8.07 -51.92 -0.42 0.43 16 36 H 0.11 2.91 5.33 -51.93 -0.28 2.64 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 39 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.39 4.52 8.10 -40.82 -0.33 4.19 16 43 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 44 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 48 H 0.09 0.81 7.85 -51.93 -0.41 0.40 16 49 H 0.09 0.99 8.12 -51.93 -0.42 0.57 16 LS Contribution 399.78 15.07 6.02 6.02 Total: -1.00 -34.92 399.78 -9.20 -44.12 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -9.35 Total: 2.00 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -1.11 Total: 6.17 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.53 Total: -56.80 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.27 Total: -18.83 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.92 -9.20 -44.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279055975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.337 kcal (2) G-P(sol) polarization free energy of solvation -34.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds