Wall clock time and date at job start Tue Mar 31 2020 19:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00101 * 2 1 4 4 C 1.52995 * 109.47325 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47240 * 65.00047 * 4 3 2 6 6 C 1.36936 * 119.99832 * 270.00441 * 5 4 3 7 7 H 1.08001 * 120.00278 * 145.87949 * 6 5 4 8 8 C 1.38813 * 119.99819 * 325.86889 * 6 5 4 9 9 N 1.31622 * 120.00279 * 336.95867 * 8 6 5 10 10 Si 1.86803 * 119.99983 * 156.95242 * 8 6 5 11 11 H 1.48510 * 109.46570 * 60.00531 * 10 8 6 12 12 H 1.48502 * 109.47259 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47361 * 300.00528 * 10 8 6 14 14 C 1.46496 * 120.00105 * 89.99778 * 5 4 3 15 15 C 1.53008 * 109.46982 * 89.41236 * 14 5 4 16 16 N 1.46496 * 109.46982 * 179.97438 * 15 14 5 17 17 C 1.34775 * 120.00186 * 180.02562 * 16 15 14 18 18 O 1.21291 * 119.99505 * 359.97438 * 17 16 15 19 19 C 1.50692 * 120.00610 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.42161 * 299.88450 * 19 17 16 21 21 C 1.53031 * 109.42716 * 179.97438 * 19 17 16 22 22 C 1.53389 * 109.71846 * 168.18168 * 21 19 17 23 23 C 1.50887 * 108.19398 * 50.54049 * 22 21 19 24 24 C 1.34564 * 128.32927 * 163.47729 * 23 22 21 25 25 N 1.35204 * 107.62211 * 180.09365 * 24 23 22 26 26 H 0.96994 * 126.00636 * 179.97438 * 25 24 23 27 27 N 1.40311 * 107.98689 * 359.96681 * 25 24 23 28 28 C 1.30125 * 108.13048 * 359.95287 * 27 25 24 29 29 C 1.50943 * 128.29046 * 180.34246 * 28 27 25 30 30 H 1.09003 * 109.46961 * 299.99501 * 1 2 3 31 31 H 1.08999 * 109.47445 * 59.99853 * 1 2 3 32 32 H 1.09000 * 109.47410 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47193 * 60.00084 * 3 2 1 34 34 H 1.09007 * 109.47316 * 300.00468 * 3 2 1 35 35 H 1.09010 * 109.47166 * 185.00096 * 4 3 2 36 36 H 1.08994 * 109.47090 * 304.99755 * 4 3 2 37 37 H 0.96997 * 119.99829 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.47571 * 209.40936 * 14 5 4 39 39 H 1.08995 * 109.47597 * 329.41404 * 14 5 4 40 40 H 1.08993 * 109.46922 * 299.99847 * 15 14 5 41 41 H 1.09001 * 109.46626 * 60.00071 * 15 14 5 42 42 H 0.97003 * 120.00630 * 359.97438 * 16 15 14 43 43 H 1.08998 * 109.43003 * 288.25877 * 21 19 17 44 44 H 1.08998 * 109.43044 * 48.16138 * 21 19 17 45 45 H 1.09002 * 109.71961 * 170.21077 * 22 21 19 46 46 H 1.09000 * 109.72126 * 290.82051 * 22 21 19 47 47 H 1.08002 * 126.19188 * 0.09142 * 24 23 22 48 48 H 1.09000 * 109.71641 * 43.44886 * 29 28 27 49 49 H 1.08998 * 109.71435 * 282.80398 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0967 -0.7970 -1.3369 7 1 3.8746 -1.3026 -2.2650 8 6 4.5050 -1.5272 -0.2292 9 7 5.1951 -0.9423 0.7269 10 14 4.0751 -3.3402 -0.0954 11 1 4.6620 -4.0742 -1.2453 12 1 4.6222 -3.8865 1.1724 13 1 2.5989 -3.5010 -0.1069 14 6 4.2863 1.4006 -2.4148 15 6 5.7631 1.7990 -2.3762 16 7 6.0739 2.6348 -3.5386 17 6 7.3243 3.1057 -3.7150 18 8 8.1921 2.8380 -2.9111 19 6 7.6439 3.9659 -4.9104 20 1 7.4432 3.4060 -5.8238 21 6 9.1211 4.3636 -4.8708 22 6 9.5267 4.9821 -6.2146 23 6 8.5235 6.0545 -6.5615 24 6 8.6389 7.0440 -7.4661 25 7 7.4953 7.7646 -7.4326 26 1 7.2946 8.5413 -7.9779 27 7 6.6499 7.1912 -6.4707 28 6 7.2633 6.1682 -5.9508 29 6 6.7675 5.2242 -4.8824 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.9785 2.1766 0.0889 36 1 3.8514 0.5683 0.8409 37 1 5.4800 -1.4525 1.5010 38 1 4.0844 0.8421 -3.3288 39 1 3.6674 2.2976 -2.3929 40 1 5.9649 2.3576 -1.4623 41 1 6.3820 0.9021 -2.3982 42 1 5.3799 2.8486 -4.1818 43 1 9.2796 5.0906 -4.0744 44 1 9.7297 3.4795 -4.6812 45 1 10.5208 5.4215 -6.1322 46 1 9.5271 4.2140 -6.9879 47 1 9.4909 7.2293 -8.1035 48 1 5.7304 4.9546 -5.0823 49 1 6.8420 5.7025 -3.9058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279055975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:19 Heat of formation + Delta-G solvation = -18.899774 kcal Electronic energy + Delta-G solvation = -29028.717340 eV Core-core repulsion = 24991.851234 eV Total energy + Delta-G solvation = -4036.866106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.40427 -40.81471 -38.87003 -37.53315 -36.98793 -35.63666 -33.39663 -33.06429 -31.83524 -30.88547 -29.51422 -28.86892 -27.10315 -26.19772 -25.29485 -23.91475 -22.98215 -21.92415 -21.83409 -21.12199 -19.81214 -18.68295 -18.47095 -17.95437 -17.25738 -16.96738 -16.65568 -16.51922 -16.35093 -16.04000 -15.60180 -15.46967 -15.37850 -14.96448 -14.87190 -14.68109 -14.39814 -14.20013 -13.75867 -13.65097 -13.49230 -13.38154 -12.93100 -12.81865 -12.67687 -12.44148 -12.35764 -12.32372 -12.21805 -12.13560 -11.93883 -11.82057 -11.73276 -11.50203 -11.20507 -10.77907 -10.43900 -10.33995 -10.30110 -9.98307 -9.29820 -8.56614 -7.74543 -5.30295 1.01872 1.48265 1.53119 1.59139 1.66561 1.80140 2.04687 2.28343 2.61501 3.24215 3.39087 3.42099 3.69497 3.79301 3.90479 4.00348 4.14672 4.32507 4.35726 4.40625 4.43829 4.48982 4.52854 4.56776 4.64894 4.65323 4.71054 4.72595 4.79099 4.85604 4.88443 4.95094 4.97255 5.00334 5.11240 5.17210 5.26611 5.28583 5.31266 5.41475 5.57834 5.73086 5.74256 5.87009 6.48062 6.53728 6.67723 6.70297 6.76450 7.23977 7.37391 7.93998 8.40958 9.23204 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.002302 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.968894 B =12158.379238 C =13255.250982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.058 3.942 4 C 0.134 3.866 5 N -0.585 5.585 6 C -0.241 4.241 7 H 0.054 0.946 8 C -0.030 4.030 9 N -0.919 5.919 10 Si 0.949 3.051 11 H -0.279 1.279 12 H -0.299 1.299 13 H -0.282 1.282 14 C 0.143 3.857 15 C 0.120 3.880 16 N -0.710 5.710 17 C 0.510 3.490 18 O -0.589 6.589 19 C -0.086 4.086 20 H 0.122 0.878 21 C -0.099 4.099 22 C -0.030 4.030 23 C -0.259 4.259 24 C 0.077 3.923 25 N -0.479 5.479 26 H 0.452 0.548 27 N -0.325 5.325 28 C 0.072 3.928 29 C -0.025 4.025 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.247 0.753 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.027 0.973 42 H 0.414 0.586 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.217 0.783 48 H 0.102 0.898 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 17.601 -17.997 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.021 4.021 4 C 0.008 3.992 5 N -0.306 5.306 6 C -0.372 4.372 7 H 0.072 0.928 8 C -0.227 4.227 9 N -0.564 5.564 10 Si 0.778 3.222 11 H -0.205 1.205 12 H -0.225 1.225 13 H -0.208 1.208 14 C 0.017 3.983 15 C -0.007 4.007 16 N -0.363 5.363 17 C 0.297 3.703 18 O -0.469 6.469 19 C -0.108 4.108 20 H 0.139 0.861 21 C -0.137 4.137 22 C -0.068 4.068 23 C -0.270 4.270 24 C -0.069 4.069 25 N -0.189 5.189 26 H 0.298 0.702 27 N -0.148 5.148 28 C -0.096 4.096 29 C -0.065 4.065 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.251 0.749 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.234 0.766 48 H 0.120 0.880 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.724 17.868 -17.280 24.917 hybrid contribution 0.039 -0.857 0.218 0.885 sum 1.762 17.011 -17.062 24.158 Atomic orbital electron populations 1.22814 0.81663 1.02489 1.00107 1.88154 1.19522 1.28752 1.95187 1.23179 0.96339 0.83997 0.98583 1.21044 0.90067 0.96333 0.91771 1.43860 1.74920 1.02332 1.09447 1.19000 1.37413 0.82948 0.97799 0.92810 1.25541 0.97449 1.00735 0.98955 1.70083 1.37759 1.37087 1.11511 0.85641 0.78083 0.82087 0.76375 1.20456 1.22536 1.20812 1.21173 0.90868 0.94864 0.91444 1.21861 0.99643 0.92269 0.86948 1.45993 1.11416 1.51643 1.27211 1.21232 0.81892 0.79921 0.87277 1.90703 1.48095 1.60699 1.47404 1.21272 0.97979 0.95155 0.96349 0.86063 1.21368 0.93194 1.00864 0.98300 1.19978 0.96555 0.94805 0.95491 1.20404 0.98001 1.04026 1.04559 1.22679 0.92203 0.92341 0.99711 1.46390 1.12447 1.27479 1.32561 0.70174 1.76944 1.18272 1.12664 1.06946 1.22288 0.94259 0.95030 0.98041 1.19963 0.99686 0.91238 0.95572 0.93608 0.93619 0.90232 0.93549 0.93783 0.93118 0.91141 0.94393 0.92341 0.91219 0.94870 0.95465 0.74876 0.92738 0.91562 0.89334 0.89798 0.76617 0.87989 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.05 16 2 O -0.40 -17.12 10.18 -148.98 -1.52 -18.64 16 3 C 0.06 2.23 6.28 71.98 0.45 2.68 16 4 C 0.13 6.19 5.72 86.38 0.49 6.69 16 5 N -0.59 -28.11 2.43 -702.01 -1.71 -29.81 16 6 C -0.24 -13.16 8.98 84.03 0.75 -12.40 16 7 H 0.05 2.94 7.93 -2.91 -0.02 2.92 16 8 C -0.03 -1.72 4.95 84.86 0.42 -1.30 16 9 N -0.92 -55.22 11.33 21.65 0.25 -54.97 16 10 Si 0.95 46.83 29.61 68.60 2.03 48.86 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 13 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 14 C 0.14 5.43 5.78 86.38 0.50 5.93 16 15 C 0.12 4.74 6.00 86.38 0.52 5.26 16 16 N -0.71 -20.76 5.46 -463.06 -2.53 -23.29 16 17 C 0.51 15.75 7.14 87.65 0.63 16.37 16 18 O -0.59 -24.55 15.77 -3.06 -0.05 -24.60 16 19 C -0.09 -1.82 2.46 -11.41 -0.03 -1.85 16 20 H 0.12 2.09 8.10 -2.39 -0.02 2.07 16 21 C -0.10 -2.09 4.65 30.73 0.14 -1.95 16 22 C -0.03 -0.44 6.28 30.04 0.19 -0.25 16 23 C -0.26 -4.20 5.89 -20.10 -0.12 -4.32 16 24 C 0.08 0.84 11.95 83.33 1.00 1.84 16 25 N -0.48 -6.36 7.37 -57.88 -0.43 -6.78 16 26 H 0.45 2.94 8.96 -213.19 -1.91 1.03 16 27 N -0.32 -6.91 12.68 -47.13 -0.60 -7.51 16 28 C 0.07 1.46 7.10 43.44 0.31 1.77 16 29 C -0.03 -0.49 5.42 30.05 0.16 -0.33 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.05 2.16 8.07 -2.38 -0.02 2.14 16 36 H 0.07 3.89 5.33 -2.39 -0.01 3.88 16 37 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 38 H 0.06 2.12 8.04 -2.38 -0.02 2.10 16 39 H 0.07 2.21 8.08 -2.39 -0.02 2.19 16 40 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.41 8.72 8.10 -92.71 -0.75 7.97 16 43 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 44 H 0.07 1.59 7.68 -2.39 -0.02 1.57 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.22 0.40 8.06 -2.91 -0.02 0.38 16 48 H 0.10 1.67 7.85 -2.39 -0.02 1.65 16 49 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 Total: -1.00 -79.55 399.78 0.42 -79.13 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -1.70 Total: 17.41 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 6.67 Total: 20.20 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -5.01 Total: -122.36 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -1.56 Total: -43.23 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -79.55 0.42 -79.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279055975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.228 kcal (2) G-P(sol) polarization free energy of solvation -79.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds