Wall clock time and date at job start Tue Mar 31 2020 19:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99952 * 2 1 4 4 C 1.52996 * 109.47452 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47226 * 64.99703 * 4 3 2 6 6 C 1.36933 * 120.00063 * 270.00499 * 5 4 3 7 7 H 1.08002 * 120.00264 * 142.64381 * 6 5 4 8 8 C 1.38817 * 119.99927 * 322.63989 * 6 5 4 9 9 N 1.31617 * 119.99846 * 157.14974 * 8 6 5 10 10 Si 1.86800 * 120.00047 * 337.14506 * 8 6 5 11 11 H 1.48507 * 109.47176 * 95.36449 * 10 8 6 12 12 H 1.48494 * 109.47292 * 215.36596 * 10 8 6 13 13 H 1.48506 * 109.47158 * 335.37222 * 10 8 6 14 14 C 1.46501 * 119.99881 * 90.00037 * 5 4 3 15 15 C 1.52998 * 109.47287 * 266.85183 * 14 5 4 16 16 N 1.46496 * 109.47033 * 179.05279 * 15 14 5 17 17 C 1.34776 * 120.00055 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99729 * 0.02562 * 17 16 15 19 19 C 1.50706 * 120.00219 * 179.97438 * 17 16 15 20 20 H 1.08994 * 109.37742 * 59.86206 * 19 17 16 21 21 C 1.53026 * 109.46758 * 179.69995 * 19 17 16 22 22 C 1.53383 * 109.76691 * 191.76250 * 21 19 17 23 23 C 1.50879 * 108.19226 * 309.47830 * 22 21 19 24 24 C 1.34579 * 128.32218 * 196.73536 * 23 22 21 25 25 N 1.35200 * 107.61420 * 179.71944 * 24 23 22 26 26 H 0.97004 * 126.00133 * 180.02562 * 25 24 23 27 27 N 1.40314 * 107.99466 * 0.04568 * 25 24 23 28 28 C 1.30128 * 108.12382 * 0.03183 * 27 25 24 29 29 C 1.50948 * 128.28822 * 179.86747 * 28 27 25 30 30 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47626 * 300.00104 * 1 2 3 32 32 H 1.09005 * 109.46989 * 60.00559 * 1 2 3 33 33 H 1.09000 * 109.47167 * 59.99333 * 3 2 1 34 34 H 1.09008 * 109.47012 * 299.99809 * 3 2 1 35 35 H 1.09003 * 109.47095 * 304.99606 * 4 3 2 36 36 H 1.09002 * 109.47222 * 184.99743 * 4 3 2 37 37 H 0.97005 * 119.99818 * 180.02562 * 9 8 6 38 38 H 1.08995 * 109.46938 * 146.84451 * 14 5 4 39 39 H 1.09010 * 109.47131 * 26.85099 * 14 5 4 40 40 H 1.08999 * 109.47312 * 59.05311 * 15 14 5 41 41 H 1.09005 * 109.46957 * 299.04992 * 15 14 5 42 42 H 0.97003 * 120.00036 * 0.02562 * 16 15 14 43 43 H 1.09006 * 109.39385 * 71.67876 * 21 19 17 44 44 H 1.08998 * 109.38073 * 311.83990 * 21 19 17 45 45 H 1.08998 * 109.71990 * 189.79949 * 22 21 19 46 46 H 1.09005 * 109.71565 * 69.15216 * 22 21 19 47 47 H 1.08001 * 126.19482 * 359.72719 * 24 23 22 48 48 H 1.08999 * 109.71654 * 316.33648 * 29 28 27 49 49 H 1.08997 * 109.71190 * 76.93054 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7974 -1.3344 7 1 3.8266 -1.3088 -2.2462 8 6 4.5693 -1.5203 -0.2471 9 7 4.2799 -2.7990 -0.1316 10 14 5.6146 -0.6781 1.0519 11 1 4.7494 -0.2425 2.1776 12 1 6.6398 -1.6277 1.5544 13 1 6.2855 0.5055 0.4566 14 6 4.2882 1.3998 -2.4130 15 6 3.0450 1.5307 -3.2951 16 7 3.3503 2.3850 -4.4454 17 6 2.3989 2.6428 -5.3646 18 8 1.2900 2.1680 -5.2391 19 6 2.7127 3.5221 -6.5477 20 1 3.5252 3.0782 -7.1228 21 6 1.4716 3.6463 -7.4342 22 6 1.8537 4.2860 -8.7749 23 6 2.6373 5.5435 -8.4905 24 6 2.9050 6.5663 -9.3232 25 7 3.6316 7.4751 -8.6346 26 1 3.9676 8.3168 -8.9805 27 7 3.8146 6.9867 -7.3320 28 6 3.2216 5.8316 -7.2458 29 6 3.1371 4.9104 -6.0529 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8464 -0.8901 35 1 3.8507 0.5687 0.8428 36 1 3.9783 2.1767 0.0902 37 1 4.6091 -3.3041 0.6284 38 1 5.0935 0.9400 -2.9858 39 1 4.6006 2.3885 -2.0763 40 1 2.2347 1.9752 -2.7173 41 1 2.7427 0.5438 -3.6456 42 1 4.2373 2.7645 -4.5459 43 1 0.7300 4.2689 -6.9336 44 1 1.0530 2.6556 -7.6113 45 1 0.9517 4.5333 -9.3347 46 1 2.4666 3.5931 -9.3515 47 1 2.5953 6.6467 -10.3547 48 1 4.1112 4.8462 -5.5682 49 1 2.3992 5.2905 -5.3464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279055976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:25 Heat of formation + Delta-G solvation = 14.046863 kcal Electronic energy + Delta-G solvation = -29369.700470 eV Core-core repulsion = 25334.263037 eV Total energy + Delta-G solvation = -4035.437433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.76954 -39.71135 -37.46515 -36.38980 -35.76290 -34.23160 -32.50234 -31.60702 -31.02671 -29.63181 -28.76279 -27.64877 -25.61521 -25.25291 -23.78804 -22.59664 -21.72572 -21.30333 -20.69437 -19.97384 -19.05988 -17.89040 -17.01988 -16.74062 -16.06062 -15.64328 -15.57117 -15.31215 -15.06227 -14.64807 -14.59190 -14.18471 -14.10880 -14.00002 -13.66448 -13.56463 -13.30611 -12.97947 -12.90019 -12.51273 -12.41605 -12.09954 -11.85164 -11.67808 -11.58311 -11.36967 -11.13669 -11.09988 -10.92543 -10.67196 -10.61252 -10.51320 -10.21567 -9.72635 -9.68848 -9.61565 -9.51756 -8.87156 -8.71843 -8.61741 -8.39634 -6.83578 -5.86460 -3.28723 1.59625 2.43287 2.51250 2.83953 3.36956 3.39680 3.51720 3.54912 4.14139 4.40489 4.60011 4.63990 4.65716 4.67849 4.85559 5.00227 5.06161 5.12381 5.22356 5.30189 5.34945 5.50040 5.54328 5.66547 5.68705 5.71642 5.78516 5.80969 5.89534 5.90440 5.98526 6.01062 6.05127 6.15479 6.16121 6.19168 6.24575 6.34914 6.37529 6.60401 6.65057 6.76927 6.88824 6.97352 7.37532 7.74633 8.01109 8.16753 8.43395 8.50077 9.03674 9.81750 10.15720 11.29279 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.002414 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.928017 B =11597.989035 C =12109.178228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.346 6.346 3 C 0.044 3.956 4 C 0.132 3.868 5 N -0.591 5.591 6 C -0.257 4.257 7 H 0.076 0.924 8 C 0.046 3.954 9 N -0.894 5.894 10 Si 0.873 3.127 11 H -0.287 1.287 12 H -0.303 1.303 13 H -0.271 1.271 14 C 0.140 3.860 15 C 0.096 3.904 16 N -0.725 5.725 17 C 0.514 3.486 18 O -0.539 6.539 19 C -0.102 4.102 20 H 0.101 0.899 21 C -0.099 4.099 22 C -0.041 4.041 23 C -0.234 4.234 24 C 0.059 3.941 25 N -0.486 5.486 26 H 0.438 0.562 27 N -0.287 5.287 28 C 0.087 3.913 29 C -0.029 4.029 30 H 0.078 0.922 31 H 0.025 0.975 32 H 0.031 0.969 33 H 0.027 0.973 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.261 0.739 38 H 0.061 0.939 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.396 0.604 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.176 0.824 48 H 0.089 0.911 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 19.733 -16.580 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.035 4.035 4 C 0.006 3.994 5 N -0.313 5.313 6 C -0.386 4.386 7 H 0.094 0.906 8 C -0.155 4.155 9 N -0.534 5.534 10 Si 0.704 3.296 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.196 1.196 14 C 0.012 3.988 15 C -0.030 4.030 16 N -0.376 5.376 17 C 0.299 3.701 18 O -0.416 6.416 19 C -0.124 4.124 20 H 0.119 0.881 21 C -0.137 4.137 22 C -0.080 4.080 23 C -0.245 4.245 24 C -0.087 4.087 25 N -0.195 5.195 26 H 0.282 0.718 27 N -0.109 5.109 28 C -0.082 4.082 29 C -0.069 4.069 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.230 0.770 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.193 0.807 48 H 0.107 0.893 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.866 19.886 -15.761 25.535 hybrid contribution 0.372 0.780 0.085 0.868 sum -2.494 20.666 -15.676 26.058 Atomic orbital electron populations 1.22647 0.83740 1.01895 0.98320 1.88295 1.16957 1.26320 1.94794 1.23331 0.97282 0.85256 0.97679 1.21389 0.90468 0.96553 0.90950 1.43894 1.76153 1.03850 1.07382 1.18557 1.38486 0.79554 1.01969 0.90622 1.25318 0.97839 0.94801 0.97560 1.69894 1.44745 1.08380 1.30419 0.86996 0.81140 0.79276 0.82173 1.21481 1.23148 1.19636 1.21011 0.93811 0.94431 0.89513 1.22378 1.00578 0.94179 0.85826 1.46129 1.14490 1.51628 1.25314 1.20430 0.84911 0.81314 0.83495 1.90710 1.22309 1.52182 1.76384 1.21345 1.00977 0.94477 0.95612 0.88130 1.21382 0.95945 1.02260 0.94072 1.20042 0.98257 0.92301 0.97354 1.20193 1.10098 1.00281 0.93964 1.22079 0.97121 0.90799 0.98702 1.46335 1.44834 1.19462 1.08847 0.71779 1.77034 1.24006 1.12654 0.97245 1.22219 0.96453 0.93290 0.96250 1.20036 1.03195 0.90624 0.93021 0.90315 0.95663 0.95082 0.95502 0.94294 0.91814 0.92718 0.92955 0.92093 0.93980 0.92244 0.91144 0.77028 0.91174 0.90083 0.90847 0.91031 0.80718 0.89286 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.67 16 2 O -0.35 -7.93 10.18 -35.23 -0.36 -8.29 16 3 C 0.04 0.87 6.28 37.16 0.23 1.10 16 4 C 0.13 2.82 4.98 -4.04 -0.02 2.80 16 5 N -0.59 -13.50 2.06 -173.23 -0.36 -13.86 16 6 C -0.26 -7.08 9.42 -15.06 -0.14 -7.23 16 7 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 8 C 0.05 1.31 5.30 -17.43 -0.09 1.22 16 9 N -0.89 -27.54 13.97 55.49 0.78 -26.77 16 10 Si 0.87 22.09 25.07 -169.99 -4.26 17.82 16 11 H -0.29 -7.15 6.66 56.52 0.38 -6.77 16 12 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.14 2.52 5.83 -4.04 -0.02 2.50 16 15 C 0.10 1.66 5.99 -4.05 -0.02 1.64 16 16 N -0.72 -9.67 5.46 -60.29 -0.33 -10.00 16 17 C 0.51 7.14 7.13 -10.98 -0.08 7.06 16 18 O -0.54 -9.84 15.77 5.56 0.09 -9.75 16 19 C -0.10 -1.03 2.47 -91.56 -0.23 -1.25 16 20 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 21 C -0.10 -0.97 4.65 -26.52 -0.12 -1.10 16 22 C -0.04 -0.32 6.28 -27.60 -0.17 -0.49 16 23 C -0.23 -2.06 5.89 -104.98 -0.62 -2.68 16 24 C 0.06 0.40 11.95 -17.36 -0.21 0.19 16 25 N -0.49 -3.67 7.37 30.35 0.22 -3.45 16 26 H 0.44 1.86 8.96 -182.43 -1.64 0.22 16 27 N -0.29 -3.15 12.68 33.75 0.43 -2.72 16 28 C 0.09 0.90 7.10 -82.35 -0.58 0.31 16 29 C -0.03 -0.28 5.43 -27.57 -0.15 -0.43 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.04 0.73 6.30 -51.92 -0.33 0.41 16 35 H 0.06 1.53 3.28 -51.93 -0.17 1.36 16 36 H 0.05 0.99 7.87 -51.93 -0.41 0.58 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.06 1.10 8.06 -51.93 -0.42 0.68 16 39 H 0.04 0.65 7.86 -51.92 -0.41 0.24 16 40 H 0.06 1.11 6.30 -51.93 -0.33 0.78 16 41 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.40 4.05 8.12 -40.82 -0.33 3.72 16 43 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 44 H 0.08 0.88 7.69 -51.93 -0.40 0.48 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 48 H 0.09 0.73 7.87 -51.93 -0.41 0.33 16 49 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -36.53 391.20 -8.08 -44.61 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -9.06 Total: 1.18 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.12 Total: 5.33 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.74 Total: -56.79 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.27 Total: -18.04 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.26 Total: 17.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.53 -8.08 -44.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279055976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.653 kcal (2) G-P(sol) polarization free energy of solvation -36.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds