Wall clock time and date at job start Tue Mar 31 2020 19:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99952 * 2 1 4 4 C 1.52996 * 109.47452 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47226 * 64.99703 * 4 3 2 6 6 C 1.36933 * 120.00063 * 270.00499 * 5 4 3 7 7 H 1.08002 * 120.00264 * 142.64381 * 6 5 4 8 8 C 1.38817 * 119.99927 * 322.63989 * 6 5 4 9 9 N 1.31617 * 119.99846 * 157.14974 * 8 6 5 10 10 Si 1.86800 * 120.00047 * 337.14506 * 8 6 5 11 11 H 1.48507 * 109.47176 * 95.36449 * 10 8 6 12 12 H 1.48494 * 109.47292 * 215.36596 * 10 8 6 13 13 H 1.48506 * 109.47158 * 335.37222 * 10 8 6 14 14 C 1.46501 * 119.99881 * 90.00037 * 5 4 3 15 15 C 1.52998 * 109.47287 * 266.85183 * 14 5 4 16 16 N 1.46496 * 109.47033 * 179.05279 * 15 14 5 17 17 C 1.34776 * 120.00055 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99729 * 0.02562 * 17 16 15 19 19 C 1.50706 * 120.00219 * 179.97438 * 17 16 15 20 20 H 1.08994 * 109.37742 * 59.86206 * 19 17 16 21 21 C 1.53026 * 109.46758 * 179.69995 * 19 17 16 22 22 C 1.53383 * 109.76691 * 191.76250 * 21 19 17 23 23 C 1.50879 * 108.19226 * 309.47830 * 22 21 19 24 24 C 1.34579 * 128.32218 * 196.73536 * 23 22 21 25 25 N 1.35200 * 107.61420 * 179.71944 * 24 23 22 26 26 H 0.97004 * 126.00133 * 180.02562 * 25 24 23 27 27 N 1.40314 * 107.99466 * 0.04568 * 25 24 23 28 28 C 1.30128 * 108.12382 * 0.03183 * 27 25 24 29 29 C 1.50948 * 128.28822 * 179.86747 * 28 27 25 30 30 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47626 * 300.00104 * 1 2 3 32 32 H 1.09005 * 109.46989 * 60.00559 * 1 2 3 33 33 H 1.09000 * 109.47167 * 59.99333 * 3 2 1 34 34 H 1.09008 * 109.47012 * 299.99809 * 3 2 1 35 35 H 1.09003 * 109.47095 * 304.99606 * 4 3 2 36 36 H 1.09002 * 109.47222 * 184.99743 * 4 3 2 37 37 H 0.97005 * 119.99818 * 180.02562 * 9 8 6 38 38 H 1.08995 * 109.46938 * 146.84451 * 14 5 4 39 39 H 1.09010 * 109.47131 * 26.85099 * 14 5 4 40 40 H 1.08999 * 109.47312 * 59.05311 * 15 14 5 41 41 H 1.09005 * 109.46957 * 299.04992 * 15 14 5 42 42 H 0.97003 * 120.00036 * 0.02562 * 16 15 14 43 43 H 1.09006 * 109.39385 * 71.67876 * 21 19 17 44 44 H 1.08998 * 109.38073 * 311.83990 * 21 19 17 45 45 H 1.08998 * 109.71990 * 189.79949 * 22 21 19 46 46 H 1.09005 * 109.71565 * 69.15216 * 22 21 19 47 47 H 1.08001 * 126.19482 * 359.72719 * 24 23 22 48 48 H 1.08999 * 109.71654 * 316.33648 * 29 28 27 49 49 H 1.08997 * 109.71190 * 76.93054 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7974 -1.3344 7 1 3.8266 -1.3088 -2.2462 8 6 4.5693 -1.5203 -0.2471 9 7 4.2799 -2.7990 -0.1316 10 14 5.6146 -0.6781 1.0519 11 1 4.7494 -0.2425 2.1776 12 1 6.6398 -1.6277 1.5544 13 1 6.2855 0.5055 0.4566 14 6 4.2882 1.3998 -2.4130 15 6 3.0450 1.5307 -3.2951 16 7 3.3503 2.3850 -4.4454 17 6 2.3989 2.6428 -5.3646 18 8 1.2900 2.1680 -5.2391 19 6 2.7127 3.5221 -6.5477 20 1 3.5252 3.0782 -7.1228 21 6 1.4716 3.6463 -7.4342 22 6 1.8537 4.2860 -8.7749 23 6 2.6373 5.5435 -8.4905 24 6 2.9050 6.5663 -9.3232 25 7 3.6316 7.4751 -8.6346 26 1 3.9676 8.3168 -8.9805 27 7 3.8146 6.9867 -7.3320 28 6 3.2216 5.8316 -7.2458 29 6 3.1371 4.9104 -6.0529 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8464 -0.8901 35 1 3.8507 0.5687 0.8428 36 1 3.9783 2.1767 0.0902 37 1 4.6091 -3.3041 0.6284 38 1 5.0935 0.9400 -2.9858 39 1 4.6006 2.3885 -2.0763 40 1 2.2347 1.9752 -2.7173 41 1 2.7427 0.5438 -3.6456 42 1 4.2373 2.7645 -4.5459 43 1 0.7300 4.2689 -6.9336 44 1 1.0530 2.6556 -7.6113 45 1 0.9517 4.5333 -9.3347 46 1 2.4666 3.5931 -9.3515 47 1 2.5953 6.6467 -10.3547 48 1 4.1112 4.8462 -5.5682 49 1 2.3992 5.2905 -5.3464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279055976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:24 Heat of formation + Delta-G solvation = -14.038580 kcal Electronic energy + Delta-G solvation = -29370.918346 eV Core-core repulsion = 25334.263037 eV Total energy + Delta-G solvation = -4036.655309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.40773 -40.84954 -39.09237 -37.60541 -37.02655 -35.68228 -33.68118 -33.13862 -31.90527 -31.01109 -29.61639 -29.12719 -27.16852 -26.26276 -25.32700 -23.83838 -22.91236 -22.32389 -21.90662 -21.14013 -19.81778 -18.77528 -18.48899 -17.98161 -17.71851 -17.02238 -16.87928 -16.53980 -16.32923 -16.00750 -15.80722 -15.44802 -15.25635 -15.21505 -14.74710 -14.67240 -14.45849 -14.35551 -14.12696 -13.69543 -13.68160 -13.57460 -13.18374 -12.91549 -12.83310 -12.55455 -12.41641 -12.32419 -12.28357 -12.14075 -11.85434 -11.83501 -11.66464 -11.39040 -11.20922 -10.84788 -10.52233 -10.37148 -10.34292 -9.98223 -9.30286 -8.74974 -8.05985 -5.44844 1.01559 1.38110 1.46981 1.57953 1.64267 1.79822 2.03503 2.24188 2.53287 3.13392 3.13573 3.41309 3.55668 3.73723 3.87525 3.99425 4.13108 4.21807 4.25641 4.35892 4.39489 4.41014 4.44852 4.51180 4.52576 4.57454 4.64751 4.65110 4.66611 4.70778 4.77680 4.85562 4.88144 5.00159 5.02612 5.10116 5.16174 5.24472 5.27730 5.29628 5.40599 5.54081 5.73134 6.03591 6.28454 6.52960 6.56680 6.64210 6.76018 7.07393 7.33486 7.73341 8.10866 9.14316 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.002414 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.928017 B =11597.989035 C =12109.178228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.397 6.397 3 C 0.043 3.957 4 C 0.123 3.877 5 N -0.603 5.603 6 C -0.236 4.236 7 H 0.028 0.972 8 C -0.016 4.016 9 N -0.950 5.950 10 Si 0.944 3.056 11 H -0.281 1.281 12 H -0.315 1.315 13 H -0.246 1.246 14 C 0.141 3.859 15 C 0.116 3.884 16 N -0.711 5.711 17 C 0.513 3.487 18 O -0.586 6.586 19 C -0.087 4.087 20 H 0.120 0.880 21 C -0.098 4.098 22 C -0.031 4.031 23 C -0.259 4.259 24 C 0.076 3.924 25 N -0.479 5.479 26 H 0.452 0.548 27 N -0.325 5.325 28 C 0.071 3.929 29 C -0.025 4.025 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.098 0.902 37 H 0.257 0.743 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.025 0.975 42 H 0.416 0.584 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.216 0.784 48 H 0.102 0.898 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.997 23.457 -17.632 29.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.315 6.315 3 C -0.035 4.035 4 C -0.002 4.002 5 N -0.326 5.326 6 C -0.366 4.366 7 H 0.046 0.954 8 C -0.212 4.212 9 N -0.594 5.594 10 Si 0.773 3.227 11 H -0.209 1.209 12 H -0.244 1.244 13 H -0.170 1.170 14 C 0.015 3.985 15 C -0.011 4.011 16 N -0.363 5.363 17 C 0.300 3.700 18 O -0.466 6.466 19 C -0.109 4.109 20 H 0.138 0.862 21 C -0.136 4.136 22 C -0.069 4.069 23 C -0.270 4.270 24 C -0.070 4.070 25 N -0.189 5.189 26 H 0.298 0.702 27 N -0.148 5.148 28 C -0.096 4.096 29 C -0.064 4.064 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.253 0.747 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.233 0.767 48 H 0.121 0.879 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.926 23.703 -16.835 29.137 hybrid contribution -0.032 -0.316 0.270 0.417 sum -1.958 23.388 -16.565 28.727 Atomic orbital electron populations 1.22764 0.81616 1.02388 0.99928 1.88217 1.19579 1.28560 1.95190 1.23362 0.96272 0.84447 0.99435 1.21584 0.91769 0.97894 0.88964 1.43973 1.76675 1.02553 1.09349 1.18314 1.36420 0.81954 0.99924 0.95403 1.25962 0.99466 0.95340 1.00442 1.70053 1.47049 1.10489 1.31809 0.85860 0.78839 0.78489 0.79509 1.20890 1.24437 1.16977 1.21145 0.93713 0.95611 0.88036 1.21856 1.00002 0.92512 0.86727 1.45917 1.15546 1.50751 1.24131 1.21146 0.84013 0.80819 0.84017 1.90693 1.24378 1.54080 1.77487 1.21273 1.01704 0.94175 0.93748 0.86237 1.21360 0.95469 1.01406 0.95407 1.19978 0.99011 0.92022 0.95904 1.20405 1.11176 1.01446 0.93987 1.22683 0.95088 0.89337 0.99924 1.46398 1.44458 1.20094 1.07976 0.70202 1.76949 1.25354 1.13280 0.99234 1.22315 0.96952 0.93441 0.96932 1.19967 1.03583 0.89828 0.93024 0.90570 0.92820 0.94491 0.92421 0.93582 0.94342 0.88361 0.93378 0.92126 0.89655 0.93261 0.95660 0.74738 0.92577 0.91549 0.89371 0.89938 0.76723 0.87938 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 11.01 113.37 1.25 2.30 16 2 O -0.40 -18.22 10.18 -148.98 -1.52 -19.73 16 3 C 0.04 1.64 6.28 71.98 0.45 2.09 16 4 C 0.12 4.94 4.98 86.38 0.43 5.37 16 5 N -0.60 -27.03 2.06 -701.99 -1.45 -28.48 16 6 C -0.24 -13.38 9.42 84.04 0.79 -12.58 16 7 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 8 C -0.02 -0.96 5.30 84.86 0.45 -0.51 16 9 N -0.95 -61.12 13.97 21.65 0.30 -60.82 16 10 Si 0.94 46.05 25.07 68.60 1.72 47.77 16 11 H -0.28 -13.34 6.66 99.48 0.66 -12.67 16 12 H -0.32 -15.81 7.11 99.48 0.71 -15.10 16 13 H -0.25 -10.86 7.11 99.48 0.71 -10.15 16 14 C 0.14 4.85 5.83 86.38 0.50 5.35 16 15 C 0.12 4.01 5.99 86.38 0.52 4.53 16 16 N -0.71 -18.25 5.46 -463.06 -2.53 -20.78 16 17 C 0.51 14.13 7.13 87.66 0.63 14.76 16 18 O -0.59 -22.03 15.77 -3.04 -0.05 -22.08 16 19 C -0.09 -1.66 2.47 -11.41 -0.03 -1.68 16 20 H 0.12 1.86 8.10 -2.39 -0.02 1.84 16 21 C -0.10 -1.87 4.65 30.73 0.14 -1.73 16 22 C -0.03 -0.41 6.28 30.03 0.19 -0.22 16 23 C -0.26 -3.90 5.89 -20.10 -0.12 -4.02 16 24 C 0.08 0.77 11.95 83.34 1.00 1.77 16 25 N -0.48 -5.96 7.37 -57.88 -0.43 -6.38 16 26 H 0.45 2.62 8.96 -213.18 -1.91 0.71 16 27 N -0.32 -6.52 12.68 -47.14 -0.60 -7.12 16 28 C 0.07 1.35 7.10 43.44 0.31 1.66 16 29 C -0.02 -0.43 5.43 30.05 0.16 -0.27 16 30 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.66 6.30 -2.38 -0.02 1.64 16 35 H 0.04 1.76 3.28 -2.39 -0.01 1.75 16 36 H 0.10 3.07 7.87 -2.39 -0.02 3.05 16 37 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 38 H 0.06 2.10 8.06 -2.39 -0.02 2.08 16 39 H 0.09 2.27 7.86 -2.38 -0.02 2.25 16 40 H 0.05 1.82 6.30 -2.39 -0.02 1.80 16 41 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.42 7.51 8.12 -92.71 -0.75 6.75 16 43 H 0.06 1.21 8.10 -2.38 -0.02 1.19 16 44 H 0.07 1.45 7.69 -2.39 -0.02 1.43 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.22 0.26 8.06 -2.91 -0.02 0.24 16 48 H 0.10 1.46 7.87 -2.39 -0.02 1.44 16 49 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 Total: -1.00 -84.58 391.20 0.40 -84.18 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -1.73 Total: 16.64 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 6.67 Total: 16.81 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -4.70 Total: -123.59 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.56 Total: -41.81 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.72 Total: 47.77 kcal Total: -84.58 0.40 -84.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279055976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.139 kcal (2) G-P(sol) polarization free energy of solvation -84.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds