Wall clock time and date at job start Tue Mar 31 2020 21:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46839 * 2 1 4 4 C 1.50700 * 109.47111 * 120.00018 * 2 1 3 5 5 N 1.31071 * 126.66008 * 300.16723 * 4 2 1 6 6 N 1.28842 * 107.98886 * 180.24681 * 5 4 2 7 7 N 1.28744 * 109.39821 * 359.75548 * 6 5 4 8 8 N 1.29024 * 108.80645 * 0.02562 * 7 6 5 9 9 C 1.46499 * 126.43783 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47257 * 90.02085 * 9 8 7 11 11 O 1.21283 * 119.99803 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99675 * 180.27849 * 10 9 8 13 13 C 1.47423 * 125.64829 * 359.41380 * 12 10 9 14 14 C 1.55137 * 104.71983 * 155.82193 * 13 12 10 15 15 H 1.08997 * 110.90402 * 155.27666 * 14 13 12 16 16 C 1.52999 * 111.22137 * 279.17563 * 14 13 12 17 17 C 1.55161 * 101.48526 * 37.29517 * 14 13 12 18 18 H 1.08998 * 110.72169 * 82.69432 * 17 14 13 19 19 C 1.53000 * 110.87166 * 205.89866 * 17 14 13 20 20 N 1.46500 * 109.47147 * 180.02562 * 19 17 14 21 21 C 1.36936 * 119.99866 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00009 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99946 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99794 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99895 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47221 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47275 * 120.00126 * 25 23 21 28 28 H 1.48506 * 109.46861 * 240.00316 * 25 23 21 29 29 C 1.47019 * 125.64379 * 179.72980 * 12 10 9 30 30 H 1.08995 * 109.47364 * 59.99920 * 1 2 3 31 31 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47350 * 299.99680 * 1 2 3 33 33 H 1.08996 * 109.46992 * 240.00121 * 2 1 3 34 34 H 1.09003 * 109.47143 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47278 * 300.00313 * 3 2 1 36 36 H 1.09004 * 109.47533 * 60.00421 * 3 2 1 37 37 H 1.09009 * 109.46700 * 330.01979 * 9 8 7 38 38 H 1.08998 * 109.46827 * 210.02553 * 9 8 7 39 39 H 1.09007 * 110.36652 * 274.74673 * 13 12 10 40 40 H 1.08993 * 110.36828 * 37.07553 * 13 12 10 41 41 H 1.09006 * 109.46481 * 172.20428 * 16 14 13 42 42 H 1.08996 * 109.47127 * 292.20645 * 16 14 13 43 43 H 1.08998 * 109.47236 * 52.20812 * 16 14 13 44 44 H 1.08995 * 109.47147 * 300.06705 * 19 17 14 45 45 H 1.09005 * 109.46991 * 60.06099 * 19 17 14 46 46 H 0.96999 * 119.99748 * 0.02562 * 20 19 17 47 47 H 0.97000 * 119.99818 * 180.02562 * 24 23 21 48 48 H 1.09003 * 109.88210 * 300.43359 * 29 12 10 49 49 H 1.08996 * 109.88947 * 61.60157 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7950 -0.3801 2.4765 6 7 2.4016 -1.2268 3.2350 7 7 3.0155 -2.0916 2.5051 8 7 2.8098 -1.8087 1.2632 9 6 3.3291 -2.5419 0.1061 10 6 2.3503 -3.6182 -0.2873 11 8 1.3205 -3.7591 0.3377 12 7 2.6222 -4.4279 -1.3298 13 6 3.8278 -4.3640 -2.1758 14 6 3.9733 -5.7924 -2.7634 15 1 4.5292 -5.7726 -3.7007 16 6 4.6316 -6.7401 -1.7587 17 6 2.4903 -6.1799 -3.0042 18 1 2.1340 -5.7724 -3.9503 19 6 2.3113 -7.6990 -2.9696 20 7 0.9030 -8.0301 -3.2006 21 6 0.5008 -9.3390 -3.2145 22 1 1.2217 -10.1272 -3.0548 23 6 -0.8335 -9.6528 -3.4338 24 7 -1.7119 -8.6923 -3.6289 25 14 -1.3822 -11.4383 -3.4521 26 1 -0.2110 -12.3187 -3.2100 27 1 -2.3942 -11.6561 -2.3875 28 1 -1.9774 -11.7597 -4.7742 29 6 1.7625 -5.5171 -1.8157 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 4.2855 -2.9971 0.3638 38 1 3.4673 -1.8539 -0.7279 39 1 3.6926 -3.6347 -2.9746 40 1 4.7006 -4.1112 -1.5739 41 1 4.5947 -7.7596 -2.1430 42 1 5.6702 -6.4458 -1.6084 43 1 4.0987 -6.6903 -0.8092 44 1 2.9245 -8.1549 -3.7469 45 1 2.6183 -8.0789 -1.9952 46 1 0.2556 -7.3222 -3.3443 47 1 -2.6443 -8.9116 -3.7818 48 1 1.6063 -6.2481 -1.0223 49 1 0.8047 -5.1145 -2.1454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279162258.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:26 Heat of formation + Delta-G solvation = 91.147518 kcal Electronic energy + Delta-G solvation = -29786.432105 eV Core-core repulsion = 25786.630758 eV Total energy + Delta-G solvation = -3999.801346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.37217 -40.54632 -38.42430 -36.48313 -35.56974 -34.85273 -33.04399 -31.69327 -31.28067 -30.04861 -28.66587 -27.59053 -26.96375 -25.54678 -24.65593 -23.74593 -23.04283 -21.87770 -21.05132 -19.86101 -19.40712 -18.21214 -17.75035 -17.02491 -16.75503 -16.50398 -15.86221 -15.44138 -15.20748 -14.95981 -14.75334 -14.15999 -13.75619 -13.70006 -13.64027 -13.35867 -13.27016 -13.10646 -12.73953 -12.58363 -12.44027 -12.40918 -12.27944 -12.06528 -12.02550 -11.74965 -11.72702 -11.55955 -11.49707 -11.16109 -11.13249 -10.91328 -10.69135 -10.61268 -10.44450 -10.28192 -10.06981 -10.02090 -9.74840 -8.94510 -8.86318 -6.99255 -5.81809 -3.11334 0.97505 1.55443 2.10654 2.13438 2.64815 3.40525 3.46058 3.48470 3.56542 3.79880 3.83166 4.08758 4.24299 4.30820 4.48199 4.56045 4.63274 4.67966 4.71842 4.82911 5.04895 5.14469 5.19320 5.24168 5.24634 5.33970 5.38786 5.45187 5.49889 5.52389 5.53351 5.60684 5.64962 5.77951 5.82446 5.86165 5.88602 5.93880 6.00988 6.08055 6.15209 6.22801 6.31336 6.57369 6.71197 7.15840 7.65304 7.71071 8.36404 8.45567 9.48013 10.03626 10.37514 11.40904 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.002566 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.802027 B =10911.053833 C =11592.058407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.203 3.797 5 N -0.300 5.300 6 N -0.073 5.073 7 N -0.085 5.085 8 N -0.295 5.295 9 C 0.097 3.903 10 C 0.511 3.489 11 O -0.515 6.515 12 N -0.607 5.607 13 C 0.094 3.906 14 C -0.096 4.096 15 H 0.094 0.906 16 C -0.146 4.146 17 C -0.101 4.101 18 H 0.087 0.913 19 C 0.163 3.837 20 N -0.734 5.734 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.119 3.881 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.024 0.976 45 H 0.026 0.974 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.079 0.921 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.782 19.530 0.618 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.201 4.201 4 C -0.075 4.075 5 N -0.148 5.148 6 N -0.066 5.066 7 N -0.070 5.070 8 N -0.096 5.096 9 C -0.029 4.029 10 C 0.295 3.705 11 O -0.390 6.390 12 N -0.341 5.341 13 C -0.029 4.029 14 C -0.116 4.116 15 H 0.112 0.888 16 C -0.203 4.203 17 C -0.120 4.120 18 H 0.106 0.894 19 C 0.035 3.965 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.003 4.003 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.042 0.958 45 H 0.044 0.956 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.098 0.902 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.320 19.139 2.493 24.642 hybrid contribution -0.542 -0.985 -1.128 1.593 sum 14.779 18.154 1.365 23.448 Atomic orbital electron populations 1.21840 0.91561 1.03504 1.03442 1.19802 0.98046 0.95961 0.89453 1.21853 1.01104 0.93404 1.03778 1.26095 0.94574 0.88815 0.98028 1.74946 1.19634 1.21948 0.98311 1.78605 1.06731 0.98935 1.22377 1.78898 1.20329 1.20644 0.87168 1.47868 1.34796 1.20047 1.06849 1.21964 0.99131 0.95526 0.86242 1.19814 0.87381 0.82718 0.80572 1.90865 1.26226 1.70245 1.51693 1.48466 1.22697 1.33229 1.29729 1.22653 0.87105 0.98923 0.94202 1.22369 0.96628 0.92988 0.99568 0.88776 1.21805 0.99374 1.00042 0.99076 1.22510 0.93474 0.98267 0.97749 0.89450 1.20710 0.88274 0.89369 0.98128 1.42373 1.02811 1.05755 1.86860 1.19232 0.92548 0.84147 1.41385 0.91116 1.24749 0.96049 0.97460 1.02571 1.69659 1.02183 1.30496 1.55627 0.86128 0.78386 0.84504 0.77220 1.20542 1.21808 1.21827 1.22129 0.93365 0.87810 0.96965 0.90793 0.91722 0.91014 0.89225 0.92435 0.90709 0.90897 0.84102 0.84511 0.90521 0.90516 0.91089 0.92816 0.92428 0.95788 0.95601 0.78306 0.93486 0.90238 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.18 37.16 0.34 -0.90 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -0.82 9.17 37.16 0.34 -0.48 16 4 C 0.20 2.36 6.64 -155.43 -1.03 1.32 16 5 N -0.30 -4.34 12.36 32.70 0.40 -3.94 16 6 N -0.07 -1.17 13.43 60.35 0.81 -0.36 16 7 N -0.09 -1.26 13.29 60.35 0.80 -0.46 16 8 N -0.30 -3.47 2.83 -59.44 -0.17 -3.64 16 9 C 0.10 0.76 5.57 -5.19 -0.03 0.73 16 10 C 0.51 6.20 7.92 -10.98 -0.09 6.11 16 11 O -0.52 -9.13 16.76 5.55 0.09 -9.03 16 12 N -0.61 -6.66 3.31 -170.38 -0.56 -7.22 16 13 C 0.09 0.64 6.17 -2.41 -0.01 0.63 16 14 C -0.10 -0.86 3.54 -88.35 -0.31 -1.17 16 15 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 16 C -0.15 -1.38 8.16 37.16 0.30 -1.07 16 17 C -0.10 -1.33 2.86 -88.78 -0.25 -1.59 16 18 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 19 C 0.16 2.91 4.53 -4.04 -0.02 2.89 16 20 N -0.73 -17.57 5.45 -59.91 -0.33 -17.90 16 21 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 25 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 29 C 0.12 1.73 5.83 -3.06 -0.02 1.72 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.50 6.84 -51.93 -0.36 0.15 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.14 0.73 7.85 -51.92 -0.41 0.32 16 38 H 0.14 0.46 7.12 -51.93 -0.37 0.09 16 39 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 40 H 0.08 0.32 7.39 -51.93 -0.38 -0.06 16 41 H 0.07 0.75 6.77 -51.93 -0.35 0.40 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.64 7.91 -51.93 -0.41 0.23 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.03 0.48 6.69 -51.93 -0.35 0.13 16 46 H 0.38 9.71 7.52 -40.82 -0.31 9.40 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.08 1.41 7.77 -51.93 -0.40 1.01 16 49 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -36.83 399.39 -6.51 -43.34 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.96 Total: 2.46 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.33 Total: 0.63 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 1.68 Total: -60.62 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.83 -6.51 -43.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279162258.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.490 kcal (2) G-P(sol) polarization free energy of solvation -36.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds