Wall clock time and date at job start Tue Mar 31 2020 21:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46839 * 2 1 4 4 C 1.50700 * 109.47111 * 120.00018 * 2 1 3 5 5 N 1.31071 * 126.66008 * 300.16723 * 4 2 1 6 6 N 1.28842 * 107.98886 * 180.24681 * 5 4 2 7 7 N 1.28744 * 109.39821 * 359.75548 * 6 5 4 8 8 N 1.29024 * 108.80645 * 0.02562 * 7 6 5 9 9 C 1.46499 * 126.43783 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47257 * 90.02085 * 9 8 7 11 11 O 1.21283 * 119.99803 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99675 * 180.27849 * 10 9 8 13 13 C 1.47423 * 125.64829 * 359.41380 * 12 10 9 14 14 C 1.55137 * 104.71983 * 155.82193 * 13 12 10 15 15 H 1.08997 * 110.90402 * 155.27666 * 14 13 12 16 16 C 1.52999 * 111.22137 * 279.17563 * 14 13 12 17 17 C 1.55161 * 101.48526 * 37.29517 * 14 13 12 18 18 H 1.08998 * 110.72169 * 82.69432 * 17 14 13 19 19 C 1.53000 * 110.87166 * 205.89866 * 17 14 13 20 20 N 1.46500 * 109.47147 * 180.02562 * 19 17 14 21 21 C 1.36936 * 119.99866 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00009 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99946 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99794 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99895 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47221 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47275 * 120.00126 * 25 23 21 28 28 H 1.48506 * 109.46861 * 240.00316 * 25 23 21 29 29 C 1.47019 * 125.64379 * 179.72980 * 12 10 9 30 30 H 1.08995 * 109.47364 * 59.99920 * 1 2 3 31 31 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47350 * 299.99680 * 1 2 3 33 33 H 1.08996 * 109.46992 * 240.00121 * 2 1 3 34 34 H 1.09003 * 109.47143 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47278 * 300.00313 * 3 2 1 36 36 H 1.09004 * 109.47533 * 60.00421 * 3 2 1 37 37 H 1.09009 * 109.46700 * 330.01979 * 9 8 7 38 38 H 1.08998 * 109.46827 * 210.02553 * 9 8 7 39 39 H 1.09007 * 110.36652 * 274.74673 * 13 12 10 40 40 H 1.08993 * 110.36828 * 37.07553 * 13 12 10 41 41 H 1.09006 * 109.46481 * 172.20428 * 16 14 13 42 42 H 1.08996 * 109.47127 * 292.20645 * 16 14 13 43 43 H 1.08998 * 109.47236 * 52.20812 * 16 14 13 44 44 H 1.08995 * 109.47147 * 300.06705 * 19 17 14 45 45 H 1.09005 * 109.46991 * 60.06099 * 19 17 14 46 46 H 0.96999 * 119.99748 * 0.02562 * 20 19 17 47 47 H 0.97000 * 119.99818 * 180.02562 * 24 23 21 48 48 H 1.09003 * 109.88210 * 300.43359 * 29 12 10 49 49 H 1.08996 * 109.88947 * 61.60157 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7950 -0.3801 2.4765 6 7 2.4016 -1.2268 3.2350 7 7 3.0155 -2.0916 2.5051 8 7 2.8098 -1.8087 1.2632 9 6 3.3291 -2.5419 0.1061 10 6 2.3503 -3.6182 -0.2873 11 8 1.3205 -3.7591 0.3377 12 7 2.6222 -4.4279 -1.3298 13 6 3.8278 -4.3640 -2.1758 14 6 3.9733 -5.7924 -2.7634 15 1 4.5292 -5.7726 -3.7007 16 6 4.6316 -6.7401 -1.7587 17 6 2.4903 -6.1799 -3.0042 18 1 2.1340 -5.7724 -3.9503 19 6 2.3113 -7.6990 -2.9696 20 7 0.9030 -8.0301 -3.2006 21 6 0.5008 -9.3390 -3.2145 22 1 1.2217 -10.1272 -3.0548 23 6 -0.8335 -9.6528 -3.4338 24 7 -1.7119 -8.6923 -3.6289 25 14 -1.3822 -11.4383 -3.4521 26 1 -0.2110 -12.3187 -3.2100 27 1 -2.3942 -11.6561 -2.3875 28 1 -1.9774 -11.7597 -4.7742 29 6 1.7625 -5.5171 -1.8157 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 4.2855 -2.9971 0.3638 38 1 3.4673 -1.8539 -0.7279 39 1 3.6926 -3.6347 -2.9746 40 1 4.7006 -4.1112 -1.5739 41 1 4.5947 -7.7596 -2.1430 42 1 5.6702 -6.4458 -1.6084 43 1 4.0987 -6.6903 -0.8092 44 1 2.9245 -8.1549 -3.7469 45 1 2.6183 -8.0789 -1.9952 46 1 0.2556 -7.3222 -3.3443 47 1 -2.6443 -8.9116 -3.7818 48 1 1.6063 -6.2481 -1.0223 49 1 0.8047 -5.1145 -2.1454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279162258.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:25 Heat of formation + Delta-G solvation = 63.753084 kcal Electronic energy + Delta-G solvation = -29787.620017 eV Core-core repulsion = 25786.630758 eV Total energy + Delta-G solvation = -4000.989258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.33028 -41.49610 -39.45533 -37.18920 -36.51454 -36.46887 -34.35841 -32.84005 -32.58933 -31.12696 -29.84143 -28.13417 -27.71245 -27.04379 -25.51919 -25.16828 -24.25411 -23.06224 -21.78982 -20.73568 -20.52568 -19.26912 -18.94394 -18.42462 -17.67243 -17.49356 -16.79143 -16.63680 -16.34273 -16.03053 -15.59370 -15.38477 -15.34437 -14.78374 -14.51951 -14.33281 -14.21944 -14.09497 -13.76739 -13.73244 -13.33776 -13.23070 -13.11837 -13.09905 -12.99607 -12.83764 -12.72339 -12.70663 -12.49944 -12.33197 -12.30531 -12.14822 -11.92572 -11.92160 -11.65725 -11.51041 -11.44810 -11.26316 -11.01779 -10.94771 -9.82848 -9.01409 -7.98227 -5.26441 0.04023 0.79431 1.10144 1.24409 1.44254 1.45546 1.54988 1.77587 2.53098 2.84506 3.08657 3.11107 3.35952 3.46975 3.54481 3.61639 3.79155 3.83244 3.99062 4.02784 4.15117 4.16450 4.26620 4.33995 4.34387 4.53083 4.57993 4.60461 4.68873 4.74979 4.79284 4.79594 4.85750 4.89260 4.91176 4.98142 5.01844 5.04720 5.13610 5.21110 5.24920 5.26549 5.33200 5.35671 5.47997 5.53317 6.24659 6.29763 6.80821 7.30926 7.44818 8.07941 8.28525 9.25477 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.002566 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.802027 B =10911.053833 C =11592.058407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.137 4.137 4 C 0.209 3.791 5 N -0.329 5.329 6 N -0.107 5.107 7 N -0.104 5.104 8 N -0.293 5.293 9 C 0.098 3.902 10 C 0.506 3.494 11 O -0.586 6.586 12 N -0.599 5.599 13 C 0.091 3.909 14 C -0.086 4.086 15 H 0.127 0.873 16 C -0.146 4.146 17 C -0.093 4.093 18 H 0.092 0.908 19 C 0.162 3.838 20 N -0.748 5.748 21 C -0.242 4.242 22 H 0.076 0.924 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.970 3.030 26 H -0.265 1.265 27 H -0.298 1.298 28 H -0.290 1.290 29 C 0.127 3.873 30 H 0.102 0.898 31 H 0.031 0.969 32 H 0.057 0.943 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.177 0.823 38 H 0.196 0.804 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.052 0.948 42 H 0.087 0.913 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.019 0.981 46 H 0.372 0.628 47 H 0.250 0.750 48 H 0.035 0.965 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.444 21.096 -1.695 28.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.196 4.196 4 C -0.069 4.069 5 N -0.178 5.178 6 N -0.100 5.100 7 N -0.090 5.090 8 N -0.094 5.094 9 C -0.026 4.026 10 C 0.293 3.707 11 O -0.466 6.466 12 N -0.332 5.332 13 C -0.029 4.029 14 C -0.105 4.105 15 H 0.145 0.855 16 C -0.203 4.203 17 C -0.112 4.112 18 H 0.110 0.890 19 C 0.035 3.965 20 N -0.391 5.391 21 C -0.374 4.374 22 H 0.094 0.906 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.799 3.201 26 H -0.189 1.189 27 H -0.226 1.226 28 H -0.217 1.217 29 C 0.003 3.997 30 H 0.121 0.879 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.194 0.806 38 H 0.213 0.787 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.037 0.963 46 H 0.204 0.796 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.087 20.698 0.155 28.155 hybrid contribution -1.643 -1.517 -0.438 2.279 sum 17.443 19.180 -0.283 25.928 Atomic orbital electron populations 1.21834 0.92622 1.01541 1.04241 1.20132 0.97075 0.97348 0.88699 1.21847 1.01851 0.91644 1.04209 1.26821 0.93261 0.88459 0.98333 1.74853 1.20477 1.22655 0.99802 1.78556 1.07954 0.99891 1.23644 1.78778 1.20867 1.20740 0.88640 1.48127 1.34477 1.20023 1.06787 1.22492 0.98203 0.95245 0.86641 1.20636 0.87195 0.83168 0.79655 1.90849 1.29480 1.72291 1.53967 1.48471 1.23319 1.31598 1.29797 1.23097 0.86488 0.98154 0.95163 1.22443 0.92981 0.94025 1.01078 0.85480 1.21809 1.01167 0.99503 0.97855 1.22373 0.97242 0.94557 0.97031 0.88979 1.20882 0.84943 0.93064 0.97574 1.42633 1.05247 1.04487 1.86689 1.19654 0.92719 0.85738 1.39287 0.90592 1.25556 0.96419 1.01328 1.03613 1.69813 1.02110 1.32390 1.57718 0.85119 0.77995 0.80256 0.76688 1.18876 1.22569 1.21744 1.21726 0.93565 0.88204 0.96169 0.87915 0.94956 0.92355 0.86008 0.91179 0.88114 0.92647 0.80575 0.78743 0.86837 0.86110 0.92882 0.89384 0.94976 0.94873 0.96323 0.79595 0.94097 0.94695 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.18 71.98 0.66 -1.69 16 2 C -0.01 -0.14 3.26 -11.54 -0.04 -0.18 16 3 C -0.14 -1.12 9.17 71.98 0.66 -0.46 16 4 C 0.21 4.62 6.64 138.13 0.92 5.54 16 5 N -0.33 -9.71 12.36 -50.45 -0.62 -10.34 16 6 N -0.11 -3.53 13.43 37.01 0.50 -3.04 16 7 N -0.10 -3.08 13.29 37.02 0.49 -2.58 16 8 N -0.29 -6.40 2.83 -341.97 -0.97 -7.36 16 9 C 0.10 1.11 5.57 85.63 0.48 1.59 16 10 C 0.51 11.52 7.92 87.66 0.69 12.22 16 11 O -0.59 -21.58 16.76 -3.04 -0.05 -21.63 16 12 N -0.60 -11.88 3.31 -811.34 -2.69 -14.57 16 13 C 0.09 0.73 6.17 86.94 0.54 1.27 16 14 C -0.09 -1.18 3.54 -9.32 -0.03 -1.21 16 15 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 16 C -0.15 -2.34 8.16 71.98 0.59 -1.75 16 17 C -0.09 -2.35 2.86 -9.60 -0.03 -2.38 16 18 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 19 C 0.16 5.79 4.53 86.38 0.39 6.18 16 20 N -0.75 -36.89 5.45 -343.45 -1.87 -38.76 16 21 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 22 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 23 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 24 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16 25 Si 0.97 46.50 29.55 68.60 2.03 48.53 16 26 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 28 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 29 C 0.13 3.81 5.83 86.73 0.51 4.32 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.12 0.78 6.84 -2.39 -0.02 0.77 16 34 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.18 0.83 7.85 -2.38 -0.02 0.81 16 38 H 0.20 -0.07 7.12 -2.39 -0.02 -0.09 16 39 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 40 H 0.12 0.05 7.39 -2.39 -0.02 0.03 16 41 H 0.05 1.04 6.77 -2.38 -0.02 1.02 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 43 H 0.03 0.67 7.91 -2.39 -0.02 0.65 16 44 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.02 0.71 6.69 -2.38 -0.02 0.69 16 46 H 0.37 19.73 7.52 -92.71 -0.70 19.03 16 47 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 48 H 0.03 1.34 7.77 -2.39 -0.02 1.32 16 49 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -90.71 399.39 4.00 -86.72 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.26 Total: 15.73 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 6.64 Total: 6.89 kcal Atomic # 7 Polarization: -131.36 SS G_CDS: -4.88 Total: -136.23 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.63 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -90.71 4.00 -86.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279162258.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.471 kcal (2) G-P(sol) polarization free energy of solvation -90.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds