Wall clock time and date at job start Tue Mar 31 2020 19:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36598 * 126.57476 * 2 1 4 4 C 1.47514 * 125.77303 * 0.04654 * 3 2 1 5 5 O 1.21598 * 120.00357 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99898 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99897 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.46950 * 179.97438 * 7 6 4 9 9 N 1.46901 * 109.46952 * 179.97438 * 8 7 6 10 10 C 1.46849 * 111.00094 * 45.79083 * 9 8 7 11 11 C 1.53030 * 109.52654 * 185.83701 * 10 9 8 12 12 C 1.53116 * 109.27901 * 300.82733 * 11 10 9 13 13 N 1.46501 * 109.57841 * 177.58933 * 12 11 10 14 14 C 1.36938 * 120.00017 * 85.27631 * 13 12 11 15 15 H 1.08000 * 119.99929 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99796 * 179.97438 * 14 13 12 17 17 N 1.31611 * 120.00259 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99753 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47036 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.46810 * 120.00715 * 18 16 14 21 21 H 1.48496 * 109.47042 * 240.00785 * 18 16 14 22 22 C 1.53118 * 109.16656 * 57.64710 * 12 11 10 23 23 C 1.46838 * 110.99831 * 170.00015 * 9 8 7 24 24 N 1.34404 * 108.45483 * 180.02562 * 3 2 1 25 25 N 1.28767 * 109.52070 * 359.75754 * 24 3 2 26 26 N 1.34808 * 126.58255 * 180.02562 * 2 1 3 27 27 C 1.46506 * 126.59290 * 359.91966 * 26 2 1 28 28 H 1.08997 * 109.46707 * 269.97523 * 1 2 3 29 29 H 1.08999 * 109.47251 * 29.97887 * 1 2 3 30 30 H 1.09000 * 109.47086 * 149.97957 * 1 2 3 31 31 H 0.96996 * 119.99991 * 359.97438 * 6 4 3 32 32 H 1.08995 * 109.47258 * 299.99937 * 7 6 4 33 33 H 1.09007 * 109.47132 * 60.00140 * 7 6 4 34 34 H 1.08995 * 109.47477 * 300.00278 * 8 7 6 35 35 H 1.08999 * 109.46848 * 60.00075 * 8 7 6 36 36 H 1.08995 * 109.46367 * 305.85834 * 10 9 8 37 37 H 1.09006 * 109.45662 * 65.81939 * 10 9 8 38 38 H 1.08999 * 109.50760 * 180.88043 * 11 10 9 39 39 H 1.09001 * 109.50167 * 60.76388 * 11 10 9 40 40 H 1.09007 * 109.51884 * 297.74364 * 12 11 10 41 41 H 0.97003 * 120.00110 * 265.28324 * 13 12 11 42 42 H 0.96994 * 120.00102 * 179.97438 * 17 16 14 43 43 H 1.08997 * 109.51010 * 182.40388 * 22 12 11 44 44 H 1.09005 * 109.50085 * 62.29089 * 22 12 11 45 45 H 1.08995 * 109.46705 * 294.18118 * 23 9 8 46 46 H 1.09004 * 109.46287 * 54.16228 * 23 9 8 47 47 H 1.08999 * 109.46892 * 90.00733 * 27 26 2 48 48 H 1.09000 * 109.46803 * 209.99906 * 27 26 2 49 49 H 1.09000 * 109.47214 * 330.00699 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5027 0.0010 5 8 0.6859 2.7628 0.0014 6 7 2.7816 3.4988 0.0014 7 6 2.3374 4.8948 0.0018 8 6 3.5574 5.8182 0.0028 9 7 3.1119 7.2181 0.0026 10 6 2.0406 7.4296 0.9845 11 6 1.5031 8.8566 0.8556 12 6 2.6436 9.8499 1.0947 13 7 2.1491 11.2173 0.9162 14 6 1.5472 11.8693 1.9592 15 1 1.4373 11.3756 2.9134 16 6 1.0791 13.1652 1.7902 17 7 1.2135 13.7671 0.6275 18 14 0.2586 14.0549 3.2133 19 1 0.2318 13.1666 4.4030 20 1 1.0228 15.2872 3.5332 21 1 -1.1306 14.4181 2.8349 22 6 3.7668 9.5768 0.0906 23 6 4.2386 8.1289 0.2417 24 7 3.5984 0.6790 -0.0006 25 7 3.6299 -0.6083 0.0042 26 7 2.3105 -1.0825 -0.0005 27 6 1.8865 -2.4849 0.0005 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 3.7291 3.2913 0.0014 32 1 1.7377 5.0855 -0.8882 33 1 1.7374 5.0850 0.8918 34 1 4.1568 5.6274 0.8930 35 1 4.1576 5.6282 -0.8869 36 1 1.2342 6.7198 0.8007 37 1 2.4345 7.2792 1.9897 38 1 0.7187 9.0183 1.5950 39 1 1.0966 9.0034 -0.1450 40 1 3.0246 9.7298 2.1089 41 1 2.2480 11.6609 0.0593 42 1 0.8861 14.6724 0.5094 43 1 4.5997 10.2530 0.2833 44 1 3.3960 9.7349 -0.9222 45 1 4.6222 7.9753 1.2503 46 1 5.0285 7.9271 -0.4819 47 1 1.7803 -2.8330 -1.0269 48 1 2.6338 -3.0900 0.5138 49 1 0.9299 -2.5748 0.5154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279424891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:05 Heat of formation + Delta-G solvation = 75.802473 kcal Electronic energy + Delta-G solvation = -28301.003943 eV Core-core repulsion = 24300.537185 eV Total energy + Delta-G solvation = -4000.466757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.69068 -39.73422 -38.76843 -35.84249 -35.39425 -34.34614 -32.78219 -32.24887 -30.57362 -29.96166 -28.83931 -27.97451 -27.35777 -24.57538 -23.63594 -23.23144 -22.09861 -21.47971 -20.95672 -20.69448 -19.26062 -18.34416 -17.02857 -16.91081 -16.53436 -16.32787 -15.70154 -15.40927 -14.78563 -14.67984 -14.60455 -14.45682 -14.13922 -13.91958 -13.73892 -13.62449 -13.53972 -13.42697 -13.14583 -13.06785 -12.82683 -12.40162 -12.36076 -11.83691 -11.63633 -11.52590 -11.47652 -11.13320 -10.85578 -10.70323 -10.68678 -10.53337 -10.34747 -10.18083 -10.11203 -9.67099 -9.62153 -9.53339 -9.21115 -8.81985 -8.17706 -6.88994 -5.71505 -2.99623 0.67222 1.32889 1.54551 2.81504 2.99662 3.46358 3.51928 3.54131 3.74334 3.83224 4.06755 4.13794 4.34707 4.37048 4.63174 4.63593 4.68859 4.82359 4.95013 4.96933 5.17736 5.24988 5.28154 5.31608 5.41018 5.48140 5.50015 5.64443 5.67317 5.73752 5.80534 5.84385 5.91851 5.95020 6.10689 6.16198 6.21163 6.33953 6.54137 6.57307 6.71962 6.94186 7.13248 7.17358 7.28570 7.31960 7.54339 7.75221 7.91922 8.47409 9.58450 10.17733 10.52623 11.51360 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026810 B = 0.001713 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.120551 B =16346.371196 C =17038.552481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.126 3.874 3 C -0.107 4.107 4 C 0.606 3.394 5 O -0.534 6.534 6 N -0.713 5.713 7 C 0.115 3.885 8 C 0.045 3.955 9 N -0.531 5.531 10 C 0.049 3.951 11 C -0.132 4.132 12 C 0.177 3.823 13 N -0.724 5.724 14 C -0.236 4.236 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.905 3.095 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.121 4.121 23 C 0.064 3.936 24 N -0.203 5.203 25 N -0.068 5.068 26 N -0.365 5.365 27 C 0.086 3.914 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.407 0.593 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.029 0.971 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.031 0.969 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 -34.751 -2.751 34.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.012 4.012 3 C -0.247 4.247 4 C 0.390 3.610 5 O -0.410 6.410 6 N -0.365 5.365 7 C -0.008 4.008 8 C -0.084 4.084 9 N -0.256 5.256 10 C -0.079 4.079 11 C -0.172 4.172 12 C 0.067 3.933 13 N -0.365 5.365 14 C -0.367 4.367 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.736 3.264 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.160 4.160 23 C -0.064 4.064 24 N -0.076 5.076 25 N -0.047 5.047 26 N -0.151 5.151 27 C -0.055 4.055 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.094 0.906 31 H 0.242 0.758 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.109 0.891 48 H 0.121 0.879 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.058 -34.788 -3.036 35.053 hybrid contribution -0.591 0.368 1.274 1.452 sum 2.466 -34.420 -1.762 34.553 Atomic orbital electron populations 1.20753 0.84455 1.05610 1.04815 1.21965 0.96341 0.86286 0.96643 1.21191 0.89069 0.95409 1.18985 1.16640 0.85522 0.82399 0.76399 1.90795 1.15818 1.83549 1.50820 1.45703 1.10261 1.06034 1.74477 1.21617 0.97132 0.78385 1.03661 1.22226 0.95957 0.88813 1.01398 1.61995 1.10618 1.02204 1.50826 1.22322 0.93813 0.99316 0.92457 1.22304 1.00232 0.92295 1.02401 1.20243 0.91177 0.85950 0.95935 1.42429 1.70223 1.10379 1.13434 1.19296 1.29810 0.95715 0.91895 0.91243 1.24730 1.02101 0.97314 0.96927 1.69668 1.52317 1.13627 1.22542 0.86146 0.78939 0.79665 0.81640 1.20626 1.21957 1.21919 1.21858 0.99304 0.93625 1.01175 1.22057 0.92049 0.93199 0.99118 1.74589 1.19044 1.04258 1.09733 1.82003 0.96009 1.03360 1.23372 1.50287 1.06442 1.07861 1.50521 1.22193 1.02552 0.75910 1.04826 0.88859 0.86761 0.90555 0.75767 0.90002 0.90533 0.94369 0.90151 0.90795 0.95272 0.91737 0.91643 0.94113 0.78252 0.93631 0.91503 0.91257 0.95027 0.91181 0.89147 0.87932 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 9.38 36.01 0.34 -0.17 16 2 C 0.13 1.01 7.02 -81.87 -0.57 0.44 16 3 C -0.11 -1.13 6.99 -83.55 -0.58 -1.71 16 4 C 0.61 7.03 7.82 -12.48 -0.10 6.94 16 5 O -0.53 -7.25 14.72 5.28 0.08 -7.17 16 6 N -0.71 -7.30 5.55 -61.35 -0.34 -7.65 16 7 C 0.12 1.26 4.92 -4.04 -0.02 1.24 16 8 C 0.04 0.47 5.39 -3.82 -0.02 0.45 16 9 N -0.53 -7.19 4.81 -234.68 -1.13 -8.31 16 10 C 0.05 0.72 4.85 -3.84 -0.02 0.70 16 11 C -0.13 -2.42 5.68 -26.66 -0.15 -2.57 16 12 C 0.18 3.58 2.84 -67.81 -0.19 3.39 16 13 N -0.72 -18.44 5.13 -53.30 -0.27 -18.71 16 14 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 18 Si 0.90 22.69 29.55 -169.99 -5.02 17.66 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 22 C -0.12 -2.05 5.57 -26.65 -0.15 -2.20 16 23 C 0.06 0.88 5.42 -3.84 -0.02 0.86 16 24 N -0.20 -2.26 12.04 32.84 0.40 -1.86 16 25 N -0.07 -0.69 13.78 60.35 0.83 0.14 16 26 N -0.37 -2.58 4.03 -63.58 -0.26 -2.83 16 27 C 0.09 0.15 11.18 59.85 0.67 0.82 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.11 0.82 6.43 -51.93 -0.33 0.48 16 30 H 0.08 0.17 7.83 -51.93 -0.41 -0.23 16 31 H 0.41 3.58 8.16 -40.82 -0.33 3.25 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.91 6.21 -51.92 -0.32 0.59 16 34 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.01 5.81 -51.93 -0.30 0.71 16 37 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.04 0.85 8.08 -51.92 -0.42 0.44 16 41 H 0.38 10.41 7.80 -40.82 -0.32 10.09 16 42 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 47 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 48 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 49 H 0.10 -0.05 7.77 -51.93 -0.40 -0.45 16 LS Contribution 396.46 15.07 5.97 5.97 Total: -1.00 -34.79 396.46 -7.96 -42.75 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.88 Total: 6.97 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.07 Total: 0.87 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -0.05 Total: -67.06 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: 0.08 Total: -7.17 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.79 -7.96 -42.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279424891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.552 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds