Wall clock time and date at job start Tue Mar 31 2020 19:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36598 * 126.57476 * 2 1 4 4 C 1.47514 * 125.77303 * 0.04654 * 3 2 1 5 5 O 1.21598 * 120.00357 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99898 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99897 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.46950 * 179.97438 * 7 6 4 9 9 N 1.46901 * 109.46952 * 179.97438 * 8 7 6 10 10 C 1.46849 * 111.00094 * 45.79083 * 9 8 7 11 11 C 1.53030 * 109.52654 * 185.83701 * 10 9 8 12 12 C 1.53116 * 109.27901 * 300.82733 * 11 10 9 13 13 N 1.46501 * 109.57841 * 177.58933 * 12 11 10 14 14 C 1.36938 * 120.00017 * 85.27631 * 13 12 11 15 15 H 1.08000 * 119.99929 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99796 * 179.97438 * 14 13 12 17 17 N 1.31611 * 120.00259 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99753 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47036 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.46810 * 120.00715 * 18 16 14 21 21 H 1.48496 * 109.47042 * 240.00785 * 18 16 14 22 22 C 1.53118 * 109.16656 * 57.64710 * 12 11 10 23 23 C 1.46838 * 110.99831 * 170.00015 * 9 8 7 24 24 N 1.34404 * 108.45483 * 180.02562 * 3 2 1 25 25 N 1.28767 * 109.52070 * 359.75754 * 24 3 2 26 26 N 1.34808 * 126.58255 * 180.02562 * 2 1 3 27 27 C 1.46506 * 126.59290 * 359.91966 * 26 2 1 28 28 H 1.08997 * 109.46707 * 269.97523 * 1 2 3 29 29 H 1.08999 * 109.47251 * 29.97887 * 1 2 3 30 30 H 1.09000 * 109.47086 * 149.97957 * 1 2 3 31 31 H 0.96996 * 119.99991 * 359.97438 * 6 4 3 32 32 H 1.08995 * 109.47258 * 299.99937 * 7 6 4 33 33 H 1.09007 * 109.47132 * 60.00140 * 7 6 4 34 34 H 1.08995 * 109.47477 * 300.00278 * 8 7 6 35 35 H 1.08999 * 109.46848 * 60.00075 * 8 7 6 36 36 H 1.08995 * 109.46367 * 305.85834 * 10 9 8 37 37 H 1.09006 * 109.45662 * 65.81939 * 10 9 8 38 38 H 1.08999 * 109.50760 * 180.88043 * 11 10 9 39 39 H 1.09001 * 109.50167 * 60.76388 * 11 10 9 40 40 H 1.09007 * 109.51884 * 297.74364 * 12 11 10 41 41 H 0.97003 * 120.00110 * 265.28324 * 13 12 11 42 42 H 0.96994 * 120.00102 * 179.97438 * 17 16 14 43 43 H 1.08997 * 109.51010 * 182.40388 * 22 12 11 44 44 H 1.09005 * 109.50085 * 62.29089 * 22 12 11 45 45 H 1.08995 * 109.46705 * 294.18118 * 23 9 8 46 46 H 1.09004 * 109.46287 * 54.16228 * 23 9 8 47 47 H 1.08999 * 109.46892 * 90.00733 * 27 26 2 48 48 H 1.09000 * 109.46803 * 209.99906 * 27 26 2 49 49 H 1.09000 * 109.47214 * 330.00699 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5027 0.0010 5 8 0.6859 2.7628 0.0014 6 7 2.7816 3.4988 0.0014 7 6 2.3374 4.8948 0.0018 8 6 3.5574 5.8182 0.0028 9 7 3.1119 7.2181 0.0026 10 6 2.0406 7.4296 0.9845 11 6 1.5031 8.8566 0.8556 12 6 2.6436 9.8499 1.0947 13 7 2.1491 11.2173 0.9162 14 6 1.5472 11.8693 1.9592 15 1 1.4373 11.3756 2.9134 16 6 1.0791 13.1652 1.7902 17 7 1.2135 13.7671 0.6275 18 14 0.2586 14.0549 3.2133 19 1 0.2318 13.1666 4.4030 20 1 1.0228 15.2872 3.5332 21 1 -1.1306 14.4181 2.8349 22 6 3.7668 9.5768 0.0906 23 6 4.2386 8.1289 0.2417 24 7 3.5984 0.6790 -0.0006 25 7 3.6299 -0.6083 0.0042 26 7 2.3105 -1.0825 -0.0005 27 6 1.8865 -2.4849 0.0005 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 3.7291 3.2913 0.0014 32 1 1.7377 5.0855 -0.8882 33 1 1.7374 5.0850 0.8918 34 1 4.1568 5.6274 0.8930 35 1 4.1576 5.6282 -0.8869 36 1 1.2342 6.7198 0.8007 37 1 2.4345 7.2792 1.9897 38 1 0.7187 9.0183 1.5950 39 1 1.0966 9.0034 -0.1450 40 1 3.0246 9.7298 2.1089 41 1 2.2480 11.6609 0.0593 42 1 0.8861 14.6724 0.5094 43 1 4.5997 10.2530 0.2833 44 1 3.3960 9.7349 -0.9222 45 1 4.6222 7.9753 1.2503 46 1 5.0285 7.9271 -0.4819 47 1 1.7803 -2.8330 -1.0269 48 1 2.6338 -3.0900 0.5138 49 1 0.9299 -2.5748 0.5154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279424891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:04 Heat of formation + Delta-G solvation = 48.109476 kcal Electronic energy + Delta-G solvation = -28302.204801 eV Core-core repulsion = 24300.537185 eV Total energy + Delta-G solvation = -4001.667616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.32801 -40.66933 -39.95481 -37.13510 -36.07284 -35.58919 -33.98873 -33.33554 -31.89558 -31.48854 -29.76639 -28.37682 -28.32836 -26.15128 -24.81621 -24.41073 -23.37425 -22.30047 -21.93373 -21.48744 -20.71927 -19.08447 -19.05694 -17.55231 -17.49927 -16.94368 -16.77199 -16.57312 -16.21840 -15.78960 -15.49329 -15.40752 -15.25048 -15.21731 -14.97289 -14.51307 -14.28075 -14.16818 -14.08631 -13.96727 -13.91934 -13.32311 -13.11134 -12.99479 -12.98534 -12.88452 -12.66547 -12.50044 -12.22808 -12.19104 -12.11414 -12.02015 -11.75168 -11.50304 -11.24847 -11.15880 -11.13258 -10.84141 -10.37644 -10.01764 -9.24779 -8.97701 -7.92843 -5.20967 0.08160 0.55516 1.10353 1.47002 1.47829 1.57738 1.99504 2.17606 2.56844 3.00277 3.17165 3.40056 3.44274 3.60884 3.71462 3.78628 3.83814 4.03522 4.09766 4.22214 4.33023 4.36171 4.37432 4.41352 4.50945 4.57380 4.60296 4.65221 4.66683 4.72432 4.76754 4.80499 4.88755 4.94728 4.98340 4.99514 5.06533 5.14204 5.21228 5.34525 5.45519 5.49834 5.51354 5.63194 6.11985 6.16090 6.30014 6.36575 6.85205 7.09238 7.35262 8.12615 8.36022 9.31014 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026810 B = 0.001713 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.120551 B =16346.371196 C =17038.552481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.132 3.868 3 C -0.133 4.133 4 C 0.604 3.396 5 O -0.560 6.560 6 N -0.706 5.706 7 C 0.122 3.878 8 C 0.052 3.948 9 N -0.541 5.541 10 C 0.060 3.940 11 C -0.122 4.122 12 C 0.170 3.830 13 N -0.738 5.738 14 C -0.237 4.237 15 H 0.073 0.927 16 C -0.078 4.078 17 N -0.970 5.970 18 Si 0.971 3.029 19 H -0.267 1.267 20 H -0.293 1.293 21 H -0.294 1.294 22 C -0.113 4.113 23 C 0.071 3.929 24 N -0.221 5.221 25 N -0.094 5.094 26 N -0.353 5.353 27 C 0.071 3.929 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.415 0.585 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.035 0.965 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.035 0.965 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.096 0.904 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 -37.661 -2.127 37.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.008 4.008 3 C -0.274 4.274 4 C 0.389 3.611 5 O -0.438 6.438 6 N -0.357 5.357 7 C -0.001 4.001 8 C -0.076 4.076 9 N -0.267 5.267 10 C -0.068 4.068 11 C -0.163 4.163 12 C 0.062 3.938 13 N -0.377 5.377 14 C -0.369 4.369 15 H 0.091 0.909 16 C -0.270 4.270 17 N -0.621 5.621 18 Si 0.800 3.200 19 H -0.191 1.191 20 H -0.220 1.220 21 H -0.221 1.221 22 C -0.151 4.151 23 C -0.057 4.057 24 N -0.094 5.094 25 N -0.073 5.073 26 N -0.139 5.139 27 C -0.067 4.067 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.252 0.748 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.203 0.797 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.115 0.885 47 H 0.127 0.873 48 H 0.130 0.870 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.266 -37.783 -2.395 37.999 hybrid contribution -0.651 1.113 1.055 1.666 sum 2.615 -36.670 -1.340 36.787 Atomic orbital electron populations 1.20833 0.82391 1.06334 1.05694 1.22364 0.97443 0.85889 0.95105 1.21234 0.89646 0.95495 1.20991 1.16843 0.85277 0.83084 0.75870 1.90776 1.16784 1.84060 1.52181 1.45617 1.10587 1.05566 1.73973 1.21453 0.97138 0.78898 1.02623 1.22216 0.95848 0.86616 1.02878 1.61929 1.10474 1.03923 1.50355 1.22141 0.94754 0.96666 0.93242 1.22093 0.99005 0.94486 1.00714 1.20496 0.92727 0.83874 0.96682 1.42649 1.70371 1.12345 1.12321 1.19655 1.28778 0.95912 0.92542 0.90890 1.25538 1.03607 0.98357 0.99448 1.69824 1.53985 1.13738 1.24579 0.85102 0.77429 0.78330 0.79103 1.19132 1.22025 1.22149 1.21739 0.97810 0.96251 0.99330 1.21998 0.92438 0.90783 1.00475 1.74541 1.19584 1.04864 1.10447 1.81897 0.97940 1.03127 1.24376 1.50608 1.05225 1.09395 1.48665 1.22728 1.04181 0.73165 1.06673 0.87726 0.88792 0.87009 0.74844 0.91211 0.91462 0.92978 0.88430 0.89681 0.94642 0.93586 0.93273 0.94698 0.79661 0.94112 0.91753 0.92260 0.94218 0.88544 0.87270 0.87035 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 9.38 71.24 0.67 -0.11 16 2 C 0.13 1.92 7.02 41.72 0.29 2.21 16 3 C -0.13 -2.74 6.99 40.81 0.29 -2.46 16 4 C 0.60 13.83 7.82 86.69 0.68 14.51 16 5 O -0.56 -15.20 14.72 -4.02 -0.06 -15.26 16 6 N -0.71 -13.84 5.55 -466.26 -2.59 -16.43 16 7 C 0.12 2.53 4.92 86.38 0.43 2.96 16 8 C 0.05 0.98 5.39 86.31 0.46 1.45 16 9 N -0.54 -13.60 4.81 -896.38 -4.31 -17.91 16 10 C 0.06 1.71 4.85 86.32 0.42 2.12 16 11 C -0.12 -4.55 5.68 30.64 0.17 -4.37 16 12 C 0.17 6.94 2.84 45.07 0.13 7.07 16 13 N -0.74 -38.43 5.13 -322.56 -1.65 -40.08 16 14 C -0.24 -13.50 9.93 84.03 0.83 -12.67 16 15 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 16 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 17 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 18 Si 0.97 47.18 29.55 68.60 2.03 49.21 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 21 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 22 C -0.11 -3.75 5.57 30.65 0.17 -3.58 16 23 C 0.07 1.79 5.42 86.33 0.47 2.26 16 24 N -0.22 -4.84 12.04 -50.00 -0.60 -5.44 16 25 N -0.09 -1.84 13.78 37.02 0.51 -1.33 16 26 N -0.35 -4.30 4.03 -355.08 -1.43 -5.73 16 27 C 0.07 0.03 11.18 127.77 1.43 1.46 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 1.26 6.43 -2.39 -0.02 1.25 16 30 H 0.11 0.10 7.83 -2.39 -0.02 0.08 16 31 H 0.42 6.82 8.16 -92.71 -0.76 6.07 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.53 6.21 -2.38 -0.01 1.52 16 34 H 0.05 0.88 8.08 -2.39 -0.02 0.87 16 35 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 2.25 5.81 -2.39 -0.01 2.23 16 37 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.03 1.46 8.08 -2.38 -0.02 1.44 16 41 H 0.37 20.85 7.80 -92.71 -0.72 20.13 16 42 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.10 1.99 8.12 -2.38 -0.02 1.97 16 47 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 48 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 49 H 0.13 -0.65 7.77 -2.39 -0.02 -0.66 16 Total: -1.00 -77.29 396.46 -1.43 -78.72 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.51 Total: 27.94 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 6.90 Total: 6.76 kcal Atomic # 7 Polarization: -137.58 SS G_CDS: -9.79 Total: -147.37 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.06 Total: -15.26 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -77.29 -1.43 -78.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279424891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.829 kcal (2) G-P(sol) polarization free energy of solvation -77.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds