Wall clock time and date at job start Tue Mar 31 2020 19:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99944 * 2 1 4 4 C 1.53001 * 109.46998 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47156 * 179.97438 * 4 3 2 6 6 C 1.35032 * 124.88127 * 125.02292 * 5 4 3 7 7 C 1.35367 * 107.22812 * 179.76586 * 6 5 4 8 8 C 1.41507 * 105.50194 * 0.35608 * 7 6 5 9 9 C 1.47711 * 126.52006 * 179.90398 * 8 7 6 10 10 O 1.21568 * 119.99693 * 359.71555 * 9 8 7 11 11 N 1.34771 * 120.00061 * 179.70962 * 9 8 7 12 12 C 1.47029 * 125.64809 * 359.95984 * 11 9 8 13 13 C 1.54364 * 107.28613 * 181.12532 * 12 11 9 14 14 C 1.55159 * 102.92491 * 22.13842 * 13 12 11 15 15 H 1.09008 * 111.00115 * 82.63854 * 14 13 12 16 16 C 1.52992 * 111.00782 * 206.45019 * 14 13 12 17 17 C 1.53004 * 109.47319 * 181.82000 * 16 14 13 18 18 N 1.46499 * 109.47198 * 180.02562 * 17 16 14 19 19 C 1.36931 * 120.00122 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00098 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00429 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48501 * 109.46922 * 269.71949 * 23 21 19 25 25 H 1.48496 * 109.47354 * 29.72145 * 23 21 19 26 26 H 1.48501 * 109.47428 * 149.72253 * 23 21 19 27 27 C 1.47420 * 125.65186 * 180.02562 * 11 9 8 28 28 N 1.28460 * 124.88514 * 305.02163 * 5 4 3 29 29 H 1.09000 * 109.47320 * 59.99901 * 1 2 3 30 30 H 1.08999 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46867 * 299.99859 * 1 2 3 32 32 H 1.08992 * 109.47373 * 59.99992 * 3 2 1 33 33 H 1.09010 * 109.46932 * 299.99832 * 3 2 1 34 34 H 1.09002 * 109.47293 * 59.99622 * 4 3 2 35 35 H 1.09006 * 109.47029 * 299.99993 * 4 3 2 36 36 H 1.07997 * 126.39320 * 0.03274 * 6 5 4 37 37 H 1.08002 * 127.25152 * 180.24489 * 7 6 5 38 38 H 1.08999 * 109.88437 * 300.51213 * 12 11 9 39 39 H 1.08999 * 109.87636 * 61.52144 * 12 11 9 40 40 H 1.08999 * 110.71092 * 263.79517 * 13 12 11 41 41 H 1.09002 * 110.75594 * 140.50767 * 13 12 11 42 42 H 1.09000 * 109.47364 * 61.82019 * 16 14 13 43 43 H 1.08998 * 109.47610 * 301.82082 * 16 14 13 44 44 H 1.08995 * 109.46638 * 60.00097 * 17 16 14 45 45 H 1.08998 * 109.46846 * 300.00550 * 17 16 14 46 46 H 0.97001 * 119.99790 * 359.97438 * 18 17 16 47 47 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 48 48 H 1.09003 * 110.36391 * 36.99582 * 27 11 9 49 49 H 1.09004 * 110.46134 * 274.72848 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 5.0266 2.9701 0.9054 7 6 5.3399 4.2424 0.5657 8 6 4.5724 4.5255 -0.5890 9 6 4.5578 5.7940 -1.3456 10 8 5.2507 6.7252 -0.9842 11 7 3.7764 5.9191 -2.4365 12 6 2.8939 4.8774 -2.9824 13 6 2.2232 5.4598 -4.2448 14 6 3.1930 6.5978 -4.6594 15 1 4.0308 6.2063 -5.2366 16 6 2.4567 7.6893 -5.4386 17 6 3.4520 8.7690 -5.8683 18 7 2.7467 9.8144 -6.6139 19 6 3.4372 10.8911 -7.1027 20 1 4.5019 10.9695 -6.9388 21 6 2.7690 11.8820 -7.8087 22 7 1.4716 11.7862 -8.0088 23 14 3.7123 13.3469 -8.4821 24 1 3.7276 14.4334 -7.4700 25 1 5.1062 12.9385 -8.7911 26 1 3.0530 13.8334 -9.7206 27 6 3.6660 7.1224 -3.2810 28 7 3.8773 3.4399 -0.8643 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.8567 0.6438 -0.8908 35 1 3.8574 0.6435 0.8892 36 1 5.4226 2.4146 1.7426 37 1 6.0289 4.9031 1.0707 38 1 3.4793 3.9969 -3.2470 39 1 2.1357 4.6108 -2.2460 40 1 1.2376 5.8604 -4.0078 41 1 2.1557 4.7058 -5.0291 42 1 1.6896 8.1339 -4.8045 43 1 1.9899 7.2532 -6.3219 44 1 4.2189 8.3244 -6.5024 45 1 3.9187 9.2050 -4.9851 46 1 1.7907 9.7435 -6.7620 47 1 1.0046 12.4785 -8.5025 48 1 4.6359 7.6112 -3.3735 49 1 2.9320 7.8131 -2.8660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280114441.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:53 Heat of formation + Delta-G solvation = 15.702655 kcal Electronic energy + Delta-G solvation = -28400.248926 eV Core-core repulsion = 24364.883293 eV Total energy + Delta-G solvation = -4035.365632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.02089 -39.89136 -38.60051 -37.67737 -35.08847 -34.42220 -32.94570 -31.26001 -30.81939 -29.97700 -29.42157 -27.42510 -26.74958 -25.08790 -23.87003 -23.03427 -22.18732 -21.57854 -21.13995 -20.07771 -19.44395 -17.93699 -17.27075 -17.04685 -16.91764 -16.60585 -16.26435 -15.96430 -15.59381 -14.96701 -14.81761 -14.57660 -14.28512 -13.87102 -13.71403 -13.58831 -13.44086 -13.28621 -12.96969 -12.80151 -12.70086 -12.53675 -12.25437 -12.15848 -11.96551 -11.62837 -11.33753 -11.07524 -10.99817 -10.78261 -10.58990 -10.42389 -10.38079 -10.28030 -10.15008 -9.93561 -9.61983 -9.60850 -9.42006 -8.81192 -8.62775 -6.86009 -5.71274 -2.99418 1.30787 1.79873 1.86177 2.90015 3.20104 3.31260 3.48232 3.53094 3.54909 3.89372 4.19637 4.24327 4.42647 4.50349 4.57679 4.60166 4.66863 4.73913 4.76882 4.86153 4.91133 4.97566 5.09277 5.11648 5.25239 5.33283 5.39975 5.46075 5.58316 5.61509 5.68544 5.76164 5.87546 5.94588 5.98098 6.02041 6.16337 6.25988 6.30736 6.32403 6.41244 6.43252 6.48142 6.91075 6.95012 7.42046 7.55225 7.76105 8.12153 8.48159 9.59017 10.17761 10.52289 11.51832 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018921 B = 0.001911 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.480882 B =14648.110177 C =15891.105577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.050 3.950 4 C 0.125 3.875 5 N -0.285 5.285 6 C -0.015 4.015 7 C -0.177 4.177 8 C -0.006 4.006 9 C 0.614 3.386 10 O -0.532 6.532 11 N -0.606 5.606 12 C 0.113 3.887 13 C -0.130 4.130 14 C -0.094 4.094 15 H 0.085 0.915 16 C -0.114 4.114 17 C 0.151 3.849 18 N -0.734 5.734 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.282 1.282 26 H -0.292 1.292 27 C 0.111 3.889 28 N -0.257 5.257 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.183 0.817 37 H 0.164 0.836 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.018 0.982 45 H 0.020 0.980 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.083 0.917 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 -29.189 20.316 35.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.075 5.075 6 C -0.157 4.157 7 C -0.205 4.205 8 C -0.166 4.166 9 C 0.400 3.600 10 O -0.407 6.407 11 N -0.339 5.339 12 C -0.010 4.010 13 C -0.168 4.168 14 C -0.114 4.114 15 H 0.103 0.897 16 C -0.152 4.152 17 C 0.023 3.977 18 N -0.378 5.378 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.208 1.208 26 H -0.218 1.218 27 C -0.011 4.011 28 N -0.093 5.093 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.200 0.800 37 H 0.182 0.818 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.101 0.899 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.094 -29.320 19.781 35.369 hybrid contribution 0.469 1.219 0.201 1.322 sum 0.563 -28.101 19.982 34.485 Atomic orbital electron populations 1.22809 0.79616 1.03280 1.00594 1.87772 1.20834 1.26598 1.95640 1.22642 0.92092 0.85689 1.02383 1.21675 0.93108 0.78518 1.06244 1.45363 1.31333 1.11558 1.19207 1.22886 0.97822 0.96639 0.98384 1.21813 1.04358 0.96021 0.98287 1.21936 1.01425 0.93872 0.99411 1.16491 0.79334 0.85073 0.79093 1.90821 1.42446 1.39549 1.67904 1.48326 1.42677 1.16120 1.26809 1.22033 0.93024 0.90649 0.95306 1.22777 0.99211 0.98417 0.96440 1.22340 0.98438 0.95706 0.94889 0.89663 1.21680 0.98722 0.95277 0.99543 1.20691 0.93720 0.88846 0.94445 1.42367 1.08304 1.22275 1.64886 1.19258 0.92426 0.97997 1.27130 0.91172 1.24747 0.95794 0.99157 1.01535 1.69667 1.07027 1.35335 1.46392 0.86175 0.78788 0.82938 0.78236 1.21736 1.20770 1.21808 1.22437 1.02716 0.86818 0.89125 1.73616 1.22664 0.97674 1.15365 0.93436 0.89037 0.93737 0.92460 0.91198 0.87846 0.86934 0.79959 0.81827 0.91136 0.91386 0.90359 0.89985 0.91586 0.91305 0.96427 0.96208 0.78346 0.93594 0.89856 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.38 10.70 -35.23 -0.38 -2.76 16 3 C 0.05 0.27 6.04 37.16 0.22 0.49 16 4 C 0.13 0.57 6.77 -4.04 -0.03 0.55 16 5 N -0.29 -2.16 3.41 -61.33 -0.21 -2.37 16 6 C -0.02 -0.11 11.40 -17.17 -0.20 -0.30 16 7 C -0.18 -1.77 10.81 -39.36 -0.43 -2.19 16 8 C -0.01 -0.07 6.98 -82.76 -0.58 -0.65 16 9 C 0.61 9.25 7.86 -12.39 -0.10 9.15 16 10 O -0.53 -9.71 17.18 5.31 0.09 -9.62 16 11 N -0.61 -8.27 3.33 -171.67 -0.57 -8.84 16 12 C 0.11 1.22 5.55 -3.04 -0.02 1.20 16 13 C -0.13 -1.34 6.42 -24.87 -0.16 -1.50 16 14 C -0.09 -1.21 3.03 -88.49 -0.27 -1.48 16 15 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 16 C -0.11 -1.79 4.84 -26.73 -0.13 -1.92 16 17 C 0.15 3.09 6.14 -4.04 -0.02 3.06 16 18 N -0.73 -19.18 5.60 -59.91 -0.34 -19.52 16 19 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 22 N -0.94 -28.88 13.06 55.49 0.72 -28.15 16 23 Si 0.91 23.01 29.55 -169.99 -5.02 17.98 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 C 0.11 1.58 5.71 -2.55 -0.01 1.56 16 28 N -0.26 -2.67 9.19 33.42 0.31 -2.36 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.44 8.08 -51.92 -0.42 0.02 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.11 0.24 8.04 -51.93 -0.42 -0.18 16 36 H 0.18 0.52 8.06 -52.49 -0.42 0.09 16 37 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.07 0.74 7.66 -51.93 -0.40 0.34 16 39 H 0.07 0.70 7.77 -51.93 -0.40 0.29 16 40 H 0.08 0.78 8.04 -51.93 -0.42 0.37 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.02 0.42 7.59 -51.93 -0.39 0.02 16 46 H 0.38 10.40 7.67 -40.82 -0.31 10.09 16 47 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.08 1.31 8.00 -51.93 -0.42 0.89 16 49 H 0.07 1.09 7.95 -51.93 -0.41 0.68 16 LS Contribution 405.75 15.07 6.11 6.11 Total: -1.00 -36.12 405.75 -8.33 -44.45 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.21 Total: 3.45 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.85 Total: 1.61 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.08 Total: -61.24 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.29 Total: -12.38 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.12 -8.33 -44.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280114441.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.150 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds