Wall clock time and date at job start Tue Mar 31 2020 19:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99944 * 2 1 4 4 C 1.53001 * 109.46998 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47156 * 179.97438 * 4 3 2 6 6 C 1.35032 * 124.88127 * 125.02292 * 5 4 3 7 7 C 1.35367 * 107.22812 * 179.76586 * 6 5 4 8 8 C 1.41507 * 105.50194 * 0.35608 * 7 6 5 9 9 C 1.47711 * 126.52006 * 179.90398 * 8 7 6 10 10 O 1.21568 * 119.99693 * 359.71555 * 9 8 7 11 11 N 1.34771 * 120.00061 * 179.70962 * 9 8 7 12 12 C 1.47029 * 125.64809 * 359.95984 * 11 9 8 13 13 C 1.54364 * 107.28613 * 181.12532 * 12 11 9 14 14 C 1.55159 * 102.92491 * 22.13842 * 13 12 11 15 15 H 1.09008 * 111.00115 * 82.63854 * 14 13 12 16 16 C 1.52992 * 111.00782 * 206.45019 * 14 13 12 17 17 C 1.53004 * 109.47319 * 181.82000 * 16 14 13 18 18 N 1.46499 * 109.47198 * 180.02562 * 17 16 14 19 19 C 1.36931 * 120.00122 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00098 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00429 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48501 * 109.46922 * 269.71949 * 23 21 19 25 25 H 1.48496 * 109.47354 * 29.72145 * 23 21 19 26 26 H 1.48501 * 109.47428 * 149.72253 * 23 21 19 27 27 C 1.47420 * 125.65186 * 180.02562 * 11 9 8 28 28 N 1.28460 * 124.88514 * 305.02163 * 5 4 3 29 29 H 1.09000 * 109.47320 * 59.99901 * 1 2 3 30 30 H 1.08999 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46867 * 299.99859 * 1 2 3 32 32 H 1.08992 * 109.47373 * 59.99992 * 3 2 1 33 33 H 1.09010 * 109.46932 * 299.99832 * 3 2 1 34 34 H 1.09002 * 109.47293 * 59.99622 * 4 3 2 35 35 H 1.09006 * 109.47029 * 299.99993 * 4 3 2 36 36 H 1.07997 * 126.39320 * 0.03274 * 6 5 4 37 37 H 1.08002 * 127.25152 * 180.24489 * 7 6 5 38 38 H 1.08999 * 109.88437 * 300.51213 * 12 11 9 39 39 H 1.08999 * 109.87636 * 61.52144 * 12 11 9 40 40 H 1.08999 * 110.71092 * 263.79517 * 13 12 11 41 41 H 1.09002 * 110.75594 * 140.50767 * 13 12 11 42 42 H 1.09000 * 109.47364 * 61.82019 * 16 14 13 43 43 H 1.08998 * 109.47610 * 301.82082 * 16 14 13 44 44 H 1.08995 * 109.46638 * 60.00097 * 17 16 14 45 45 H 1.08998 * 109.46846 * 300.00550 * 17 16 14 46 46 H 0.97001 * 119.99790 * 359.97438 * 18 17 16 47 47 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 48 48 H 1.09003 * 110.36391 * 36.99582 * 27 11 9 49 49 H 1.09004 * 110.46134 * 274.72848 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 5.0266 2.9701 0.9054 7 6 5.3399 4.2424 0.5657 8 6 4.5724 4.5255 -0.5890 9 6 4.5578 5.7940 -1.3456 10 8 5.2507 6.7252 -0.9842 11 7 3.7764 5.9191 -2.4365 12 6 2.8939 4.8774 -2.9824 13 6 2.2232 5.4598 -4.2448 14 6 3.1930 6.5978 -4.6594 15 1 4.0308 6.2063 -5.2366 16 6 2.4567 7.6893 -5.4386 17 6 3.4520 8.7690 -5.8683 18 7 2.7467 9.8144 -6.6139 19 6 3.4372 10.8911 -7.1027 20 1 4.5019 10.9695 -6.9388 21 6 2.7690 11.8820 -7.8087 22 7 1.4716 11.7862 -8.0088 23 14 3.7123 13.3469 -8.4821 24 1 3.7276 14.4334 -7.4700 25 1 5.1062 12.9385 -8.7911 26 1 3.0530 13.8334 -9.7206 27 6 3.6660 7.1224 -3.2810 28 7 3.8773 3.4399 -0.8643 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.8567 0.6438 -0.8908 35 1 3.8574 0.6435 0.8892 36 1 5.4226 2.4146 1.7426 37 1 6.0289 4.9031 1.0707 38 1 3.4793 3.9969 -3.2470 39 1 2.1357 4.6108 -2.2460 40 1 1.2376 5.8604 -4.0078 41 1 2.1557 4.7058 -5.0291 42 1 1.6896 8.1339 -4.8045 43 1 1.9899 7.2532 -6.3219 44 1 4.2189 8.3244 -6.5024 45 1 3.9187 9.2050 -4.9851 46 1 1.7907 9.7435 -6.7620 47 1 1.0046 12.4785 -8.5025 48 1 4.6359 7.6112 -3.3735 49 1 2.9320 7.8131 -2.8660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280114441.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:52 Heat of formation + Delta-G solvation = -9.322540 kcal Electronic energy + Delta-G solvation = -28401.334100 eV Core-core repulsion = 24364.883293 eV Total energy + Delta-G solvation = -4036.450806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.70150 -40.98049 -39.02657 -38.82429 -36.85177 -35.04706 -34.49730 -32.76990 -31.70735 -30.71884 -30.58121 -28.64571 -27.33575 -26.29161 -25.10949 -24.23120 -22.96153 -22.74390 -22.08766 -21.25847 -20.35025 -19.15293 -18.59112 -18.01636 -17.54936 -17.31710 -17.04870 -16.66726 -16.61782 -16.47419 -15.89087 -15.55329 -15.34192 -15.20695 -14.97921 -14.76426 -14.43472 -14.26192 -14.04698 -14.01088 -13.75381 -13.34909 -13.04595 -13.00125 -12.98240 -12.81442 -12.61538 -12.35346 -12.30451 -12.20036 -12.02305 -11.85855 -11.69654 -11.57716 -11.40474 -11.31498 -10.93139 -10.76329 -10.30462 -10.13108 -9.70386 -9.00721 -7.96439 -5.25240 0.45712 1.14515 1.29996 1.46232 1.48425 1.56929 1.91605 2.28893 2.55300 2.77810 3.26475 3.36835 3.48942 3.61555 3.76072 3.79036 3.84077 3.97061 4.08933 4.16637 4.22339 4.30085 4.33063 4.46388 4.49038 4.49617 4.55359 4.63496 4.64883 4.67608 4.73508 4.75144 4.77012 4.85425 4.86271 4.92572 4.95911 5.08834 5.15584 5.24849 5.35050 5.40050 5.46228 5.48951 5.80481 6.02676 6.26737 6.38650 6.76483 7.05550 7.32579 8.08841 8.32724 9.27071 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018921 B = 0.001911 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.480882 B =14648.110177 C =15891.105577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.122 3.878 5 N -0.277 5.277 6 C 0.011 3.989 7 C -0.203 4.203 8 C -0.039 4.039 9 C 0.605 3.395 10 O -0.580 6.580 11 N -0.607 5.607 12 C 0.117 3.883 13 C -0.119 4.119 14 C -0.083 4.083 15 H 0.089 0.911 16 C -0.098 4.098 17 C 0.148 3.852 18 N -0.747 5.747 19 C -0.249 4.249 20 H 0.072 0.928 21 C -0.077 4.077 22 N -0.968 5.968 23 Si 0.975 3.025 24 H -0.287 1.287 25 H -0.271 1.271 26 H -0.291 1.291 27 C 0.109 3.891 28 N -0.262 5.262 29 H 0.047 0.953 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.146 0.854 36 H 0.230 0.770 37 H 0.162 0.838 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.019 0.981 45 H 0.014 0.986 46 H 0.375 0.625 47 H 0.252 0.748 48 H 0.060 0.940 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.306 -31.937 21.170 38.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.025 4.025 4 C 0.003 3.997 5 N -0.067 5.067 6 C -0.131 4.131 7 C -0.231 4.231 8 C -0.197 4.197 9 C 0.394 3.606 10 O -0.459 6.459 11 N -0.339 5.339 12 C -0.005 4.005 13 C -0.157 4.157 14 C -0.103 4.103 15 H 0.107 0.893 16 C -0.136 4.136 17 C 0.021 3.979 18 N -0.390 5.390 19 C -0.381 4.381 20 H 0.090 0.910 21 C -0.269 4.269 22 N -0.619 5.619 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.196 1.196 26 H -0.218 1.218 27 C -0.014 4.014 28 N -0.100 5.100 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.164 0.836 36 H 0.247 0.753 37 H 0.179 0.821 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.125 0.875 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.037 0.963 45 H 0.032 0.968 46 H 0.207 0.793 47 H 0.061 0.939 48 H 0.079 0.921 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.141 -32.117 20.635 38.175 hybrid contribution 0.440 1.946 0.010 1.995 sum 0.581 -30.172 20.645 36.563 Atomic orbital electron populations 1.22960 0.78779 1.04245 1.00909 1.87748 1.21833 1.26808 1.95679 1.22583 0.92677 0.85470 1.01807 1.21982 0.92448 0.76989 1.08302 1.45716 1.30731 1.11864 1.18351 1.23482 0.95902 0.95414 0.98301 1.22003 1.05089 0.97765 0.98259 1.21672 1.03782 0.93582 1.00695 1.16993 0.78696 0.85736 0.79204 1.90771 1.44440 1.41399 1.69260 1.48434 1.42693 1.16420 1.26389 1.22140 0.92776 0.90013 0.95534 1.22778 0.98516 0.97690 0.96690 1.22193 0.99023 0.95652 0.93449 0.89270 1.21509 0.97574 0.94523 1.00042 1.20864 0.94670 0.88899 0.93430 1.42584 1.08120 1.22966 1.65327 1.19642 0.92784 0.98893 1.26748 0.91004 1.25593 0.96797 1.02089 1.02398 1.69815 1.08461 1.36228 1.47387 0.85121 0.77912 0.79340 0.77284 1.21424 1.19563 1.21769 1.22349 1.01321 0.87338 0.90346 1.73537 1.22531 0.97627 1.16269 0.93392 0.87832 0.93182 0.92484 0.92422 0.87153 0.83586 0.75315 0.82052 0.90418 0.90551 0.89641 0.87497 0.91777 0.90564 0.96337 0.96838 0.79286 0.93904 0.92100 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.40 -4.00 10.70 -148.98 -1.59 -5.60 16 3 C 0.05 0.45 6.04 71.98 0.43 0.88 16 4 C 0.12 0.71 6.77 86.38 0.58 1.29 16 5 N -0.28 -3.45 3.41 -347.94 -1.19 -4.64 16 6 C 0.01 0.12 11.40 83.54 0.95 1.07 16 7 C -0.20 -3.92 10.81 22.41 0.24 -3.68 16 8 C -0.04 -0.96 6.98 42.46 0.30 -0.66 16 9 C 0.61 19.05 7.86 86.75 0.68 19.73 16 10 O -0.58 -22.61 17.18 -3.93 -0.07 -22.68 16 11 N -0.61 -16.86 3.33 -815.31 -2.71 -19.58 16 12 C 0.12 2.38 5.55 86.74 0.48 2.86 16 13 C -0.12 -2.20 6.42 31.80 0.20 -2.00 16 14 C -0.08 -2.09 3.03 -9.41 -0.03 -2.12 16 15 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 16 C -0.10 -3.05 4.84 30.59 0.15 -2.90 16 17 C 0.15 6.13 6.14 86.38 0.53 6.67 16 18 N -0.75 -39.60 5.60 -343.46 -1.92 -41.53 16 19 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 20 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 22 N -0.97 -60.51 13.06 21.65 0.28 -60.22 16 23 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 27 C 0.11 3.21 5.71 86.85 0.50 3.71 16 28 N -0.26 -5.09 9.19 -48.17 -0.44 -5.53 16 29 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.63 8.08 -2.38 -0.02 0.61 16 34 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.15 -0.07 8.04 -2.38 -0.02 -0.09 16 36 H 0.23 0.14 8.06 -2.91 -0.02 0.11 16 37 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 38 H 0.08 1.50 7.66 -2.39 -0.02 1.48 16 39 H 0.08 1.45 7.77 -2.39 -0.02 1.44 16 40 H 0.08 1.51 8.04 -2.39 -0.02 1.49 16 41 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 2.03 8.03 -2.39 -0.02 2.01 16 43 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.01 0.59 7.59 -2.39 -0.02 0.57 16 46 H 0.38 20.74 7.67 -92.71 -0.71 20.03 16 47 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 48 H 0.06 2.04 8.00 -2.39 -0.02 2.02 16 49 H 0.07 2.03 7.95 -2.38 -0.02 2.01 16 Total: -1.00 -80.46 405.75 2.19 -78.27 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.22 Total: 23.41 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 7.58 Total: 8.48 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -5.98 Total: -131.50 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -1.66 Total: -28.28 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -80.46 2.19 -78.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280114441.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.947 kcal (2) G-P(sol) polarization free energy of solvation -80.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds