Wall clock time and date at job start Tue Mar 31 2020 19:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00161 * 2 1 4 4 C 1.53002 * 109.47513 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47470 * 180.02562 * 4 3 2 6 6 C 1.35029 * 124.88588 * 125.00058 * 5 4 3 7 7 C 1.35362 * 107.22900 * 180.02562 * 6 5 4 8 8 C 1.41505 * 105.50288 * 359.97438 * 7 6 5 9 9 C 1.47713 * 126.51957 * 179.73720 * 8 7 6 10 10 O 1.21579 * 119.99612 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00149 * 180.02562 * 9 8 7 12 12 C 1.47022 * 125.65065 * 359.69186 * 11 9 8 13 13 C 1.54334 * 107.26863 * 178.85262 * 12 11 9 14 14 C 1.55151 * 103.01782 * 338.14077 * 13 12 11 15 15 H 1.09005 * 111.03983 * 277.21520 * 14 13 12 16 16 C 1.53004 * 111.00146 * 153.38493 * 14 13 12 17 17 C 1.53005 * 109.46697 * 181.34779 * 16 14 13 18 18 N 1.46498 * 109.46704 * 179.97438 * 17 16 14 19 19 C 1.36940 * 119.99833 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00370 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00208 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99608 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00402 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46722 * 0.02562 * 23 21 19 25 25 H 1.48492 * 109.47128 * 119.99859 * 23 21 19 26 26 H 1.48496 * 109.46852 * 240.00056 * 23 21 19 27 27 C 1.47424 * 125.64951 * 180.02562 * 11 9 8 28 28 N 1.28472 * 124.88107 * 305.03745 * 5 4 3 29 29 H 1.09002 * 109.47067 * 60.00093 * 1 2 3 30 30 H 1.09005 * 109.47100 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47341 * 300.00023 * 1 2 3 32 32 H 1.09005 * 109.47263 * 59.99864 * 3 2 1 33 33 H 1.09003 * 109.47373 * 299.99921 * 3 2 1 34 34 H 1.08997 * 109.46763 * 59.99607 * 4 3 2 35 35 H 1.09003 * 109.46669 * 300.00269 * 4 3 2 36 36 H 1.08000 * 126.38562 * 359.97438 * 6 5 4 37 37 H 1.07997 * 127.24971 * 180.02562 * 7 6 5 38 38 H 1.09007 * 109.88440 * 298.39701 * 12 11 9 39 39 H 1.09000 * 109.88025 * 59.56080 * 12 11 9 40 40 H 1.09000 * 110.84978 * 219.67288 * 13 12 11 41 41 H 1.09000 * 110.66963 * 96.52590 * 13 12 11 42 42 H 1.08994 * 109.46834 * 301.34341 * 16 14 13 43 43 H 1.09000 * 109.47175 * 61.35116 * 16 14 13 44 44 H 1.08993 * 109.47655 * 299.99935 * 17 16 14 45 45 H 1.09000 * 109.47033 * 60.00250 * 17 16 14 46 46 H 0.97003 * 120.00593 * 0.02562 * 18 17 16 47 47 H 0.97004 * 119.99639 * 179.97438 * 22 21 19 48 48 H 1.08995 * 110.36739 * 322.92780 * 27 11 9 49 49 H 1.09005 * 110.36980 * 85.14126 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0262 2.9695 0.9072 7 6 5.3352 4.2440 0.5719 8 6 4.5724 4.5260 -0.5861 9 6 4.5531 5.7972 -1.3380 10 8 5.2417 6.7302 -0.9724 11 7 3.7723 5.9230 -2.4292 12 6 2.8991 4.8779 -2.9831 13 6 2.1820 5.4822 -4.2089 14 6 2.2699 7.0090 -3.9476 15 1 1.4767 7.3374 -3.2759 16 6 2.2319 7.7931 -5.2609 17 6 2.3544 9.2893 -4.9652 18 7 2.3186 10.0400 -6.2227 19 6 2.4122 11.4061 -6.2075 20 1 2.5129 11.9301 -5.2685 21 6 2.3778 12.1176 -7.3989 22 7 2.2546 11.4791 -8.5433 23 14 2.5063 13.9811 -7.3782 24 1 2.6367 14.4526 -5.9761 25 1 3.6992 14.4036 -8.1550 26 1 1.2857 14.5681 -7.9870 27 6 3.6576 7.1289 -3.2694 28 7 3.8771 3.4408 -0.8623 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6438 -0.8908 35 1 3.8574 0.6435 0.8891 36 1 5.4211 2.4137 1.7448 37 1 6.0203 4.9060 1.0806 38 1 3.4964 4.0183 -3.2872 39 1 2.1637 4.5757 -2.2374 40 1 1.1424 5.1571 -4.2494 41 1 2.7034 5.2176 -5.1288 42 1 3.0605 7.4792 -5.8956 43 1 1.2889 7.5998 -5.7723 44 1 1.5258 9.6033 -4.3305 45 1 3.2973 9.4826 -4.4538 46 1 2.2278 9.5696 -7.0662 47 1 2.2302 11.9763 -9.3759 48 1 3.7021 8.0265 -2.6527 49 1 4.4484 7.1454 -4.0195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280114442.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:57 Heat of formation + Delta-G solvation = 15.651978 kcal Electronic energy + Delta-G solvation = -28425.383173 eV Core-core repulsion = 24390.015344 eV Total energy + Delta-G solvation = -4035.367830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.01911 -39.89044 -38.60084 -37.67674 -35.08956 -34.42115 -32.94653 -31.25947 -30.82017 -29.97662 -29.42191 -27.41799 -26.74447 -25.09187 -23.87885 -23.03658 -22.18903 -21.58676 -21.14561 -20.05877 -19.43515 -17.92480 -17.31174 -17.06318 -16.86298 -16.58602 -16.24845 -16.09197 -15.31386 -15.29254 -14.70978 -14.54324 -14.30185 -13.86036 -13.75295 -13.54420 -13.45208 -13.28251 -12.98479 -12.80099 -12.68204 -12.53708 -12.27695 -12.14414 -11.96645 -11.63232 -11.34196 -11.07849 -10.99899 -10.80003 -10.58614 -10.41506 -10.37965 -10.27754 -10.14846 -9.91380 -9.62618 -9.60778 -9.41835 -8.81913 -8.62558 -6.86125 -5.71597 -2.99733 1.30935 1.79669 1.86683 2.90244 3.20309 3.31320 3.47523 3.53206 3.55630 3.89477 4.19717 4.24431 4.42738 4.50421 4.57534 4.59931 4.66906 4.74015 4.76933 4.86814 4.90356 4.97623 5.09267 5.11662 5.25236 5.33400 5.40175 5.46178 5.57773 5.61460 5.68594 5.75912 5.87478 5.94942 5.98254 6.02248 6.16450 6.25955 6.30450 6.32028 6.41264 6.42929 6.48087 6.90734 6.94772 7.42238 7.55371 7.76458 8.12393 8.47835 9.58772 10.17510 10.51962 11.51563 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.001925 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.673399 B =14539.754072 C =15717.125619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.050 3.950 4 C 0.125 3.875 5 N -0.285 5.285 6 C -0.015 4.015 7 C -0.177 4.177 8 C -0.006 4.006 9 C 0.613 3.387 10 O -0.532 6.532 11 N -0.606 5.606 12 C 0.113 3.887 13 C -0.131 4.131 14 C -0.094 4.094 15 H 0.085 0.915 16 C -0.114 4.114 17 C 0.150 3.850 18 N -0.735 5.735 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.111 3.889 28 N -0.257 5.257 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.183 0.817 37 H 0.164 0.836 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.018 0.982 45 H 0.020 0.980 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.083 0.917 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 -29.007 20.669 35.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.075 5.075 6 C -0.157 4.157 7 C -0.205 4.205 8 C -0.166 4.166 9 C 0.400 3.600 10 O -0.407 6.407 11 N -0.339 5.339 12 C -0.010 4.010 13 C -0.169 4.169 14 C -0.113 4.113 15 H 0.103 0.897 16 C -0.152 4.152 17 C 0.023 3.977 18 N -0.379 5.379 19 C -0.367 4.367 20 H 0.089 0.911 21 C -0.213 4.213 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.011 4.011 28 N -0.093 5.093 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.200 0.800 37 H 0.182 0.818 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.101 0.899 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.791 -29.074 20.254 35.442 hybrid contribution 0.371 1.266 0.274 1.347 sum -0.421 -27.808 20.528 34.566 Atomic orbital electron populations 1.22809 0.79616 1.03280 1.00594 1.87771 1.20833 1.26600 1.95639 1.22642 0.92091 0.85688 1.02383 1.21672 0.93108 0.78522 1.06239 1.45366 1.31304 1.11531 1.19276 1.22884 0.97890 0.96590 0.98356 1.21810 1.04482 0.95964 0.98228 1.21934 1.01467 0.93851 0.99378 1.16495 0.79421 0.85120 0.78967 1.90825 1.42491 1.39455 1.67949 1.48329 1.43107 1.15825 1.26680 1.22025 0.93081 0.90421 0.95461 1.22771 1.01058 0.95483 0.97559 1.22341 0.96492 0.94510 0.97994 0.89710 1.21684 1.02505 0.96053 0.94993 1.20693 0.97866 0.88935 0.90219 1.42380 1.88702 1.03812 1.02957 1.19306 1.41616 0.83012 0.92814 0.91112 1.24752 1.03173 0.97986 0.95355 1.69678 1.57767 1.34165 0.96787 0.86105 0.77170 0.85654 0.77247 1.20533 1.21886 1.21919 1.22448 0.97546 0.87562 0.93536 1.73619 1.22557 0.97695 1.15451 0.93446 0.89037 0.93727 0.92458 0.91203 0.87847 0.86945 0.79960 0.81828 0.91225 0.91280 0.90055 0.90320 0.91564 0.91316 0.96441 0.96176 0.78342 0.93639 0.89850 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.38 10.70 -35.23 -0.38 -2.76 16 3 C 0.05 0.27 6.04 37.16 0.22 0.49 16 4 C 0.13 0.58 6.77 -4.04 -0.03 0.55 16 5 N -0.29 -2.16 3.41 -61.33 -0.21 -2.37 16 6 C -0.02 -0.11 11.40 -17.17 -0.20 -0.30 16 7 C -0.18 -1.77 10.81 -39.36 -0.43 -2.20 16 8 C -0.01 -0.07 6.98 -82.76 -0.58 -0.65 16 9 C 0.61 9.26 7.86 -12.39 -0.10 9.16 16 10 O -0.53 -9.72 17.18 5.30 0.09 -9.63 16 11 N -0.61 -8.28 3.33 -171.66 -0.57 -8.85 16 12 C 0.11 1.22 5.54 -3.06 -0.02 1.20 16 13 C -0.13 -1.35 6.42 -24.89 -0.16 -1.51 16 14 C -0.09 -1.20 3.08 -88.46 -0.27 -1.48 16 15 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.11 -1.80 4.84 -26.73 -0.13 -1.92 16 17 C 0.15 3.08 6.11 -4.04 -0.02 3.06 16 18 N -0.73 -19.18 5.60 -59.91 -0.34 -19.51 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 22 N -0.93 -28.88 13.06 55.49 0.72 -28.16 16 23 Si 0.91 23.01 29.55 -169.99 -5.02 17.98 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 27 C 0.11 1.58 5.56 -2.52 -0.01 1.57 16 28 N -0.26 -2.67 9.19 33.42 0.31 -2.37 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.11 0.24 8.04 -51.93 -0.42 -0.18 16 36 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.07 0.73 7.79 -51.92 -0.40 0.33 16 39 H 0.07 0.71 7.64 -51.93 -0.40 0.31 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 42 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.42 7.46 -51.93 -0.39 0.04 16 46 H 0.38 10.40 7.67 -40.82 -0.31 10.09 16 47 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.08 1.31 7.96 -51.93 -0.41 0.89 16 49 H 0.07 1.10 8.01 -51.93 -0.42 0.69 16 LS Contribution 405.57 15.07 6.11 6.11 Total: -1.00 -36.15 405.57 -8.33 -44.48 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.20 Total: 3.44 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.85 Total: 1.64 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.08 Total: -61.26 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.29 Total: -12.39 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.15 -8.33 -44.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280114442.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.132 kcal (2) G-P(sol) polarization free energy of solvation -36.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds