Wall clock time and date at job start Tue Mar 31 2020 19:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00161 * 2 1 4 4 C 1.53002 * 109.47513 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47470 * 180.02562 * 4 3 2 6 6 C 1.35029 * 124.88588 * 125.00058 * 5 4 3 7 7 C 1.35362 * 107.22900 * 180.02562 * 6 5 4 8 8 C 1.41505 * 105.50288 * 359.97438 * 7 6 5 9 9 C 1.47713 * 126.51957 * 179.73720 * 8 7 6 10 10 O 1.21579 * 119.99612 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00149 * 180.02562 * 9 8 7 12 12 C 1.47022 * 125.65065 * 359.69186 * 11 9 8 13 13 C 1.54334 * 107.26863 * 178.85262 * 12 11 9 14 14 C 1.55151 * 103.01782 * 338.14077 * 13 12 11 15 15 H 1.09005 * 111.03983 * 277.21520 * 14 13 12 16 16 C 1.53004 * 111.00146 * 153.38493 * 14 13 12 17 17 C 1.53005 * 109.46697 * 181.34779 * 16 14 13 18 18 N 1.46498 * 109.46704 * 179.97438 * 17 16 14 19 19 C 1.36940 * 119.99833 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00370 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00208 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99608 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00402 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46722 * 0.02562 * 23 21 19 25 25 H 1.48492 * 109.47128 * 119.99859 * 23 21 19 26 26 H 1.48496 * 109.46852 * 240.00056 * 23 21 19 27 27 C 1.47424 * 125.64951 * 180.02562 * 11 9 8 28 28 N 1.28472 * 124.88107 * 305.03745 * 5 4 3 29 29 H 1.09002 * 109.47067 * 60.00093 * 1 2 3 30 30 H 1.09005 * 109.47100 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47341 * 300.00023 * 1 2 3 32 32 H 1.09005 * 109.47263 * 59.99864 * 3 2 1 33 33 H 1.09003 * 109.47373 * 299.99921 * 3 2 1 34 34 H 1.08997 * 109.46763 * 59.99607 * 4 3 2 35 35 H 1.09003 * 109.46669 * 300.00269 * 4 3 2 36 36 H 1.08000 * 126.38562 * 359.97438 * 6 5 4 37 37 H 1.07997 * 127.24971 * 180.02562 * 7 6 5 38 38 H 1.09007 * 109.88440 * 298.39701 * 12 11 9 39 39 H 1.09000 * 109.88025 * 59.56080 * 12 11 9 40 40 H 1.09000 * 110.84978 * 219.67288 * 13 12 11 41 41 H 1.09000 * 110.66963 * 96.52590 * 13 12 11 42 42 H 1.08994 * 109.46834 * 301.34341 * 16 14 13 43 43 H 1.09000 * 109.47175 * 61.35116 * 16 14 13 44 44 H 1.08993 * 109.47655 * 299.99935 * 17 16 14 45 45 H 1.09000 * 109.47033 * 60.00250 * 17 16 14 46 46 H 0.97003 * 120.00593 * 0.02562 * 18 17 16 47 47 H 0.97004 * 119.99639 * 179.97438 * 22 21 19 48 48 H 1.08995 * 110.36739 * 322.92780 * 27 11 9 49 49 H 1.09005 * 110.36980 * 85.14126 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0262 2.9695 0.9072 7 6 5.3352 4.2440 0.5719 8 6 4.5724 4.5260 -0.5861 9 6 4.5531 5.7972 -1.3380 10 8 5.2417 6.7302 -0.9724 11 7 3.7723 5.9230 -2.4292 12 6 2.8991 4.8779 -2.9831 13 6 2.1820 5.4822 -4.2089 14 6 2.2699 7.0090 -3.9476 15 1 1.4767 7.3374 -3.2759 16 6 2.2319 7.7931 -5.2609 17 6 2.3544 9.2893 -4.9652 18 7 2.3186 10.0400 -6.2227 19 6 2.4122 11.4061 -6.2075 20 1 2.5129 11.9301 -5.2685 21 6 2.3778 12.1176 -7.3989 22 7 2.2546 11.4791 -8.5433 23 14 2.5063 13.9811 -7.3782 24 1 2.6367 14.4526 -5.9761 25 1 3.6992 14.4036 -8.1550 26 1 1.2857 14.5681 -7.9870 27 6 3.6576 7.1289 -3.2694 28 7 3.8771 3.4408 -0.8623 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6438 -0.8908 35 1 3.8574 0.6435 0.8891 36 1 5.4211 2.4137 1.7448 37 1 6.0203 4.9060 1.0806 38 1 3.4964 4.0183 -3.2872 39 1 2.1637 4.5757 -2.2374 40 1 1.1424 5.1571 -4.2494 41 1 2.7034 5.2176 -5.1288 42 1 3.0605 7.4792 -5.8956 43 1 1.2889 7.5998 -5.7723 44 1 1.5258 9.6033 -4.3305 45 1 3.2973 9.4826 -4.4538 46 1 2.2278 9.5696 -7.0662 47 1 2.2302 11.9763 -9.3759 48 1 3.7021 8.0265 -2.6527 49 1 4.4484 7.1454 -4.0195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280114442.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:56 Heat of formation + Delta-G solvation = -9.423478 kcal Electronic energy + Delta-G solvation = -28426.470527 eV Core-core repulsion = 24390.015344 eV Total energy + Delta-G solvation = -4036.455183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.70087 -40.98091 -39.02622 -38.82438 -36.85191 -35.04692 -34.49873 -32.76967 -31.70769 -30.72356 -30.57985 -28.63320 -27.33366 -26.30053 -25.10930 -24.24343 -22.97294 -22.74172 -22.08420 -21.24210 -20.34612 -19.15466 -18.57379 -18.06433 -17.55365 -17.22115 -17.01497 -16.87880 -16.65348 -16.19888 -16.06299 -15.52270 -15.35841 -15.18749 -14.94811 -14.77857 -14.44844 -14.20105 -14.11362 -14.02431 -13.72542 -13.35767 -13.03021 -13.02192 -12.98447 -12.84310 -12.61095 -12.34814 -12.31284 -12.15239 -12.02516 -11.85981 -11.69961 -11.57555 -11.40229 -11.31577 -10.94247 -10.76081 -10.30503 -10.13064 -9.70385 -9.00861 -7.96832 -5.25594 0.45742 1.14388 1.30185 1.46123 1.47314 1.57662 1.91689 2.28947 2.54966 2.77937 3.26386 3.36590 3.48826 3.61499 3.76106 3.79435 3.84203 3.97071 4.09068 4.16260 4.22608 4.29786 4.33311 4.46639 4.48718 4.49785 4.55535 4.63642 4.64903 4.67709 4.73534 4.74955 4.76958 4.85134 4.86463 4.92470 4.96187 5.08690 5.15368 5.24980 5.34882 5.40071 5.46279 5.48990 5.80520 6.02948 6.26561 6.38723 6.76489 7.05577 7.32337 8.08588 8.32360 9.26886 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.001925 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.673399 B =14539.754072 C =15717.125619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.122 3.878 5 N -0.277 5.277 6 C 0.011 3.989 7 C -0.203 4.203 8 C -0.038 4.038 9 C 0.605 3.395 10 O -0.580 6.580 11 N -0.607 5.607 12 C 0.117 3.883 13 C -0.119 4.119 14 C -0.083 4.083 15 H 0.090 0.910 16 C -0.099 4.099 17 C 0.148 3.852 18 N -0.747 5.747 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.077 4.077 22 N -0.968 5.968 23 Si 0.975 3.025 24 H -0.269 1.269 25 H -0.292 1.292 26 H -0.289 1.289 27 C 0.109 3.891 28 N -0.262 5.262 29 H 0.047 0.953 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.146 0.854 36 H 0.230 0.770 37 H 0.162 0.838 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.019 0.981 45 H 0.014 0.986 46 H 0.375 0.625 47 H 0.252 0.748 48 H 0.061 0.939 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 -31.438 22.096 38.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.025 4.025 4 C 0.003 3.997 5 N -0.067 5.067 6 C -0.131 4.131 7 C -0.231 4.231 8 C -0.197 4.197 9 C 0.394 3.606 10 O -0.459 6.459 11 N -0.339 5.339 12 C -0.004 4.004 13 C -0.157 4.157 14 C -0.102 4.102 15 H 0.108 0.892 16 C -0.137 4.137 17 C 0.021 3.979 18 N -0.390 5.390 19 C -0.379 4.379 20 H 0.090 0.910 21 C -0.269 4.269 22 N -0.619 5.619 23 Si 0.803 3.197 24 H -0.193 1.193 25 H -0.219 1.219 26 H -0.216 1.216 27 C -0.014 4.014 28 N -0.100 5.100 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.164 0.836 36 H 0.247 0.753 37 H 0.179 0.821 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.037 0.963 45 H 0.032 0.968 46 H 0.207 0.793 47 H 0.061 0.939 48 H 0.079 0.921 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.498 -31.543 21.699 38.315 hybrid contribution 0.562 1.895 -0.093 1.979 sum -0.936 -29.648 21.607 36.698 Atomic orbital electron populations 1.22960 0.78772 1.04240 1.00919 1.87746 1.21840 1.26815 1.95680 1.22582 0.92652 0.85471 1.01824 1.21979 0.92475 0.76990 1.08285 1.45718 1.30702 1.11838 1.18414 1.23479 0.95968 0.95365 0.98273 1.22000 1.05224 0.97715 0.98187 1.21669 1.03833 0.93548 1.00664 1.16998 0.78766 0.85783 0.79096 1.90775 1.44482 1.41305 1.69321 1.48436 1.43090 1.16138 1.26277 1.22134 0.92831 0.89761 0.95720 1.22771 1.02706 0.92774 0.97464 1.22197 0.95507 0.96269 0.96269 0.89163 1.21515 1.02753 0.92919 0.96494 1.20865 0.97328 0.91604 0.88069 1.42597 1.88620 1.03401 1.04396 1.19679 1.40746 0.84574 0.92941 0.90990 1.25596 1.03608 1.02633 0.95078 1.69822 1.59102 1.35774 0.97213 0.85055 0.76853 0.80124 0.77632 1.19307 1.21889 1.21643 1.22357 0.98348 0.87440 0.93213 1.73540 1.22431 0.97647 1.16341 0.93384 0.87847 0.93166 0.92466 0.92401 0.87174 0.83604 0.75316 0.82058 0.90598 0.90342 0.87441 0.89744 0.91783 0.90568 0.96331 0.96812 0.79284 0.93908 0.92067 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.40 -3.99 10.70 -148.98 -1.59 -5.58 16 3 C 0.05 0.45 6.04 71.98 0.43 0.88 16 4 C 0.12 0.71 6.77 86.38 0.58 1.29 16 5 N -0.28 -3.46 3.41 -347.96 -1.19 -4.64 16 6 C 0.01 0.12 11.40 83.54 0.95 1.08 16 7 C -0.20 -3.93 10.81 22.41 0.24 -3.69 16 8 C -0.04 -0.95 6.98 42.46 0.30 -0.66 16 9 C 0.61 19.08 7.86 86.75 0.68 19.76 16 10 O -0.58 -22.66 17.18 -3.97 -0.07 -22.73 16 11 N -0.61 -16.89 3.33 -815.28 -2.71 -19.61 16 12 C 0.12 2.38 5.54 86.73 0.48 2.86 16 13 C -0.12 -2.21 6.42 31.78 0.20 -2.00 16 14 C -0.08 -2.06 3.08 -9.40 -0.03 -2.09 16 15 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 16 C -0.10 -3.06 4.84 30.60 0.15 -2.91 16 17 C 0.15 6.13 6.11 86.38 0.53 6.65 16 18 N -0.75 -39.60 5.60 -343.45 -1.92 -41.53 16 19 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 20 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 22 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 23 Si 0.97 47.63 29.55 68.60 2.03 49.66 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 C 0.11 3.22 5.56 86.86 0.48 3.70 16 28 N -0.26 -5.09 9.19 -48.17 -0.44 -5.54 16 29 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.06 0.63 8.08 -2.39 -0.02 0.61 16 34 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.15 -0.07 8.04 -2.39 -0.02 -0.09 16 36 H 0.23 0.14 8.06 -2.91 -0.02 0.12 16 37 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 38 H 0.08 1.48 7.79 -2.38 -0.02 1.46 16 39 H 0.08 1.47 7.64 -2.39 -0.02 1.46 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.51 8.04 -2.39 -0.02 1.49 16 42 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 43 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.01 0.60 7.46 -2.39 -0.02 0.58 16 46 H 0.38 20.74 7.67 -92.71 -0.71 20.03 16 47 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 48 H 0.06 2.06 7.96 -2.39 -0.02 2.04 16 49 H 0.06 2.02 8.01 -2.38 -0.02 2.00 16 Total: -1.00 -80.57 405.57 2.17 -78.40 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.22 Total: 23.28 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 7.56 Total: 8.56 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -5.98 Total: -131.58 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -1.66 Total: -28.31 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -80.57 2.17 -78.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280114442.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.972 kcal (2) G-P(sol) polarization free energy of solvation -80.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds