Wall clock time and date at job start Tue Mar 31 2020 19:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47313 * 2 1 4 4 C 1.53007 * 109.46775 * 239.99872 * 2 1 3 5 5 N 1.46499 * 109.46965 * 120.00388 * 2 1 3 6 6 N 1.28718 * 125.32389 * 359.96878 * 5 2 1 7 7 N 1.28981 * 108.99409 * 180.02562 * 6 5 2 8 8 C 1.34189 * 107.24894 * 0.02562 * 7 6 5 9 9 C 1.48003 * 126.70177 * 179.97438 * 8 7 6 10 10 O 1.21533 * 120.00193 * 172.44220 * 9 8 7 11 11 N 1.34781 * 119.99358 * 352.43942 * 9 8 7 12 12 C 1.46926 * 120.62609 * 173.00089 * 11 9 8 13 13 C 1.53191 * 108.77603 * 126.41318 * 12 11 9 14 14 C 1.53041 * 109.30965 * 54.63545 * 13 12 11 15 15 C 1.53002 * 109.45759 * 178.62553 * 14 13 12 16 16 N 1.46502 * 109.46233 * 58.65369 * 14 13 12 17 17 C 1.36934 * 120.00154 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.99944 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99934 * 180.02562 * 17 16 14 20 20 N 1.31613 * 120.00437 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46748 * 270.00033 * 21 19 17 23 23 H 1.48504 * 109.47217 * 29.99612 * 21 19 17 24 24 H 1.48497 * 109.47382 * 149.99681 * 21 19 17 25 25 C 1.53038 * 109.53909 * 298.63370 * 14 13 12 26 26 C 1.46925 * 120.63391 * 353.02423 * 11 9 8 27 27 N 1.28874 * 125.31740 * 180.29275 * 5 2 1 28 28 H 1.08994 * 109.47167 * 300.00033 * 1 2 3 29 29 H 1.08998 * 109.47178 * 60.00231 * 1 2 3 30 30 H 1.08999 * 109.47134 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46943 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46810 * 299.99994 * 3 2 1 33 33 H 1.08997 * 109.46573 * 59.99685 * 3 2 1 34 34 H 1.08999 * 109.47317 * 299.99921 * 4 2 1 35 35 H 1.09003 * 109.47002 * 60.00638 * 4 2 1 36 36 H 1.08999 * 109.46422 * 179.97438 * 4 2 1 37 37 H 1.09000 * 109.59131 * 6.62703 * 12 11 9 38 38 H 1.09000 * 109.58460 * 246.20284 * 12 11 9 39 39 H 1.08994 * 109.49893 * 294.68426 * 13 12 11 40 40 H 1.09004 * 109.52439 * 174.59595 * 13 12 11 41 41 H 1.08992 * 109.47657 * 300.02733 * 15 14 13 42 42 H 1.08997 * 109.47134 * 60.02969 * 15 14 13 43 43 H 1.08998 * 109.46949 * 180.02562 * 15 14 13 44 44 H 0.97003 * 119.99603 * 0.02562 * 16 14 13 45 45 H 0.97007 * 119.99797 * 0.02562 * 20 19 17 46 46 H 1.09001 * 109.50097 * 181.31984 * 25 14 13 47 47 H 1.09001 * 109.50034 * 301.41653 * 25 14 13 48 48 H 1.08999 * 109.58392 * 353.37599 * 26 11 9 49 49 H 1.09000 * 109.58493 * 113.79991 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 1.2762 -1.2161 2.1072 7 7 2.0307 -1.7389 3.0133 8 6 3.3029 -1.5253 2.6437 9 6 4.5190 -1.9463 3.3747 10 8 5.6130 -1.8107 2.8631 11 7 4.4130 -2.4801 4.6078 12 6 5.5901 -3.0425 5.2836 13 6 5.7260 -2.3891 6.6625 14 6 4.4160 -2.5604 7.4350 15 6 4.5595 -1.9390 8.8258 16 7 4.1103 -3.9871 7.5671 17 6 2.9786 -4.3866 8.2264 18 1 2.3111 -3.6500 8.6487 19 6 2.6892 -5.7384 8.3520 20 7 3.5028 -6.6362 7.8379 21 14 1.1449 -6.2834 9.2507 22 1 1.4506 -6.4691 10.6921 23 1 0.0915 -5.2480 9.0975 24 1 0.6650 -7.5664 8.6772 25 6 3.2817 -1.8637 6.6801 26 6 3.1181 -2.5111 5.3014 27 7 3.2581 -0.8620 1.5036 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1299 -0.7209 -1.2495 37 1 6.4831 -2.8381 4.6929 38 1 5.4650 -4.1190 5.4001 39 1 5.9413 -1.3274 6.5424 40 1 6.5377 -2.8650 7.2128 41 1 5.3668 -2.4353 9.3641 42 1 4.7869 -0.8775 8.7278 43 1 3.6267 -2.0613 9.3763 44 1 4.7100 -4.6487 7.1882 45 1 4.3049 -6.3532 7.3715 46 1 2.3536 -1.9661 7.2425 47 1 3.5200 -0.8069 6.5597 48 1 2.3801 -1.9562 4.7222 49 1 2.7915 -3.5443 5.4193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281499272.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:25 Heat of formation + Delta-G solvation = 119.391982 kcal Electronic energy + Delta-G solvation = -30641.675761 eV Core-core repulsion = 26643.099186 eV Total energy + Delta-G solvation = -3998.576575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.52620 -40.00556 -38.07383 -37.75771 -34.75873 -33.59166 -32.87330 -32.33897 -30.69109 -28.76992 -28.16657 -28.08300 -27.80583 -25.49607 -24.70150 -23.65487 -22.81392 -22.49982 -20.96240 -20.18402 -18.60480 -17.52742 -17.44436 -16.96251 -16.79024 -16.04406 -15.31503 -14.89820 -14.72205 -14.56761 -14.42724 -14.01608 -13.69094 -13.54340 -13.48753 -13.36384 -13.10514 -12.97911 -12.87701 -12.61147 -12.40632 -12.37049 -12.12333 -11.97745 -11.61227 -11.56114 -11.37917 -11.22689 -11.14415 -11.09942 -10.72199 -10.70523 -10.49367 -10.38182 -10.25452 -9.96680 -9.92178 -9.62867 -9.04587 -8.88248 -8.32288 -6.97987 -6.03587 -3.03818 0.94722 1.44049 1.51245 2.83419 3.16147 3.55090 3.59320 3.71559 3.73134 3.97091 3.99857 4.10478 4.44035 4.70652 4.85800 4.90234 4.91737 5.04272 5.07813 5.12296 5.14026 5.27409 5.31969 5.35608 5.41305 5.48617 5.55771 5.56577 5.65047 5.70328 5.79223 5.85854 5.97148 6.02277 6.04485 6.21099 6.26005 6.34805 6.49766 6.57648 6.60748 6.68889 6.88742 7.00841 7.04840 7.53264 7.87947 8.01296 8.24530 8.81058 9.27374 10.14026 10.29553 11.44411 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.003188 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.399165 B = 8780.888024 C = 9725.322018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.176 3.824 3 C -0.160 4.160 4 C -0.160 4.160 5 N -0.127 5.127 6 N -0.060 5.060 7 N -0.247 5.247 8 C 0.136 3.864 9 C 0.610 3.390 10 O -0.526 6.526 11 N -0.574 5.574 12 C 0.118 3.882 13 C -0.131 4.131 14 C 0.201 3.799 15 C -0.148 4.148 16 N -0.728 5.728 17 C -0.320 4.320 18 H 0.065 0.935 19 C -0.045 4.045 20 N -0.946 5.946 21 Si 1.077 2.923 22 H -0.298 1.298 23 H -0.295 1.295 24 H -0.290 1.290 25 C -0.131 4.131 26 C 0.093 3.907 27 N -0.250 5.250 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.048 0.952 42 H 0.035 0.965 43 H 0.057 0.943 44 H 0.366 0.634 45 H 0.254 0.746 46 H 0.078 0.922 47 H 0.045 0.955 48 H 0.110 0.890 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 16.699 -16.606 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 C -0.218 4.218 4 C -0.219 4.219 5 N -0.042 5.042 6 N -0.052 5.052 7 N -0.121 5.121 8 C -0.148 4.148 9 C 0.392 3.608 10 O -0.400 6.400 11 N -0.306 5.306 12 C -0.003 4.003 13 C -0.169 4.169 14 C 0.110 3.890 15 C -0.208 4.208 16 N -0.371 5.371 17 C -0.451 4.451 18 H 0.083 0.917 19 C -0.242 4.242 20 N -0.592 5.592 21 Si 0.909 3.091 22 H -0.226 1.226 23 H -0.222 1.222 24 H -0.216 1.216 25 C -0.172 4.172 26 C -0.030 4.030 27 N -0.102 5.102 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.200 0.800 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.128 0.872 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.768 15.658 -16.440 23.199 hybrid contribution 1.384 1.049 -0.290 1.761 sum -3.385 16.708 -16.730 23.885 Atomic orbital electron populations 1.22107 0.89789 1.04846 1.04397 1.21498 0.96640 0.92807 0.79464 1.22254 1.03490 0.91935 1.04148 1.22261 1.03511 1.01194 0.94913 1.50719 1.01017 1.34330 1.18101 1.78936 1.22089 1.08796 0.95355 1.76154 1.00258 1.17650 1.18066 1.25359 0.94588 1.01714 0.93115 1.16200 0.84476 0.78710 0.81464 1.90794 1.25641 1.55658 1.67957 1.47901 1.12109 1.56476 1.14092 1.21688 0.87386 0.98257 0.93001 1.22117 0.98950 1.00781 0.95058 1.19491 0.91030 0.86180 0.92292 1.22191 1.01979 0.97883 0.98723 1.42506 1.27240 0.99735 1.67646 1.19936 1.00471 0.93539 1.31126 0.91675 1.25625 1.04838 0.91620 1.02133 1.70854 1.14091 1.34718 1.39526 0.83259 0.74744 0.75502 0.75580 1.22581 1.22167 1.21587 1.22282 1.01570 0.97496 0.95812 1.22500 0.82938 1.04398 0.93131 1.74964 1.02657 1.17414 1.15200 0.90435 0.89149 0.90404 0.90253 0.89014 0.91267 0.91217 0.89016 0.90240 0.89408 0.90316 0.91601 0.90580 0.93276 0.94579 0.92425 0.79970 0.93452 0.90393 0.93589 0.87236 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 7.90 37.16 0.29 -0.56 16 2 C 0.18 1.32 1.30 -131.81 -0.17 1.15 16 3 C -0.16 -0.94 8.66 37.16 0.32 -0.62 16 4 C -0.16 -0.98 8.67 37.16 0.32 -0.66 16 5 N -0.13 -1.57 3.72 0.53 0.00 -1.57 16 6 N -0.06 -0.85 12.21 60.35 0.74 -0.12 16 7 N -0.25 -4.09 9.07 32.10 0.29 -3.80 16 8 C 0.14 2.31 7.80 -156.24 -1.22 1.09 16 9 C 0.61 11.15 7.70 -12.26 -0.09 11.05 16 10 O -0.53 -10.51 16.52 5.34 0.09 -10.42 16 11 N -0.57 -10.24 2.97 -173.82 -0.52 -10.75 16 12 C 0.12 2.02 6.17 -3.71 -0.02 2.00 16 13 C -0.13 -2.15 4.96 -26.61 -0.13 -2.28 16 14 C 0.20 3.81 0.74 -131.78 -0.10 3.71 16 15 C -0.15 -2.69 8.44 37.16 0.31 -2.38 16 16 N -0.73 -16.80 4.13 -47.19 -0.19 -17.00 16 17 C -0.32 -8.37 8.68 -15.06 -0.13 -8.51 16 18 H 0.07 1.70 6.70 -52.49 -0.35 1.35 16 19 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 20 N -0.95 -28.51 13.70 55.49 0.76 -27.75 16 21 Si 1.08 25.69 29.92 -169.99 -5.09 20.61 16 22 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 C -0.13 -2.38 4.71 -26.61 -0.13 -2.51 16 26 C 0.09 1.70 5.85 -3.71 -0.02 1.68 16 27 N -0.25 -3.76 11.86 32.11 0.38 -3.37 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 38 H 0.08 1.44 6.94 -51.93 -0.36 1.08 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.12 7.27 -51.93 -0.38 0.74 16 44 H 0.37 8.87 5.30 -40.82 -0.22 8.66 16 45 H 0.25 7.53 6.78 -40.82 -0.28 7.25 16 46 H 0.08 1.51 7.31 -51.93 -0.38 1.13 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.11 1.95 4.17 -65.38 -0.27 1.67 16 49 H 0.09 1.95 7.74 -51.93 -0.40 1.55 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -32.87 385.66 -6.30 -39.17 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.71 Total: 7.37 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -0.86 Total: 1.82 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: 1.46 Total: -64.36 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.09 Total: 20.61 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.87 -6.30 -39.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281499272.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.563 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds