Wall clock time and date at job start Tue Mar 31 2020 19:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47313 * 2 1 4 4 C 1.53007 * 109.46775 * 239.99872 * 2 1 3 5 5 N 1.46499 * 109.46965 * 120.00388 * 2 1 3 6 6 N 1.28718 * 125.32389 * 359.96878 * 5 2 1 7 7 N 1.28981 * 108.99409 * 180.02562 * 6 5 2 8 8 C 1.34189 * 107.24894 * 0.02562 * 7 6 5 9 9 C 1.48003 * 126.70177 * 179.97438 * 8 7 6 10 10 O 1.21533 * 120.00193 * 172.44220 * 9 8 7 11 11 N 1.34781 * 119.99358 * 352.43942 * 9 8 7 12 12 C 1.46926 * 120.62609 * 173.00089 * 11 9 8 13 13 C 1.53191 * 108.77603 * 126.41318 * 12 11 9 14 14 C 1.53041 * 109.30965 * 54.63545 * 13 12 11 15 15 C 1.53002 * 109.45759 * 178.62553 * 14 13 12 16 16 N 1.46502 * 109.46233 * 58.65369 * 14 13 12 17 17 C 1.36934 * 120.00154 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.99944 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99934 * 180.02562 * 17 16 14 20 20 N 1.31613 * 120.00437 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46748 * 270.00033 * 21 19 17 23 23 H 1.48504 * 109.47217 * 29.99612 * 21 19 17 24 24 H 1.48497 * 109.47382 * 149.99681 * 21 19 17 25 25 C 1.53038 * 109.53909 * 298.63370 * 14 13 12 26 26 C 1.46925 * 120.63391 * 353.02423 * 11 9 8 27 27 N 1.28874 * 125.31740 * 180.29275 * 5 2 1 28 28 H 1.08994 * 109.47167 * 300.00033 * 1 2 3 29 29 H 1.08998 * 109.47178 * 60.00231 * 1 2 3 30 30 H 1.08999 * 109.47134 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46943 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46810 * 299.99994 * 3 2 1 33 33 H 1.08997 * 109.46573 * 59.99685 * 3 2 1 34 34 H 1.08999 * 109.47317 * 299.99921 * 4 2 1 35 35 H 1.09003 * 109.47002 * 60.00638 * 4 2 1 36 36 H 1.08999 * 109.46422 * 179.97438 * 4 2 1 37 37 H 1.09000 * 109.59131 * 6.62703 * 12 11 9 38 38 H 1.09000 * 109.58460 * 246.20284 * 12 11 9 39 39 H 1.08994 * 109.49893 * 294.68426 * 13 12 11 40 40 H 1.09004 * 109.52439 * 174.59595 * 13 12 11 41 41 H 1.08992 * 109.47657 * 300.02733 * 15 14 13 42 42 H 1.08997 * 109.47134 * 60.02969 * 15 14 13 43 43 H 1.08998 * 109.46949 * 180.02562 * 15 14 13 44 44 H 0.97003 * 119.99603 * 0.02562 * 16 14 13 45 45 H 0.97007 * 119.99797 * 0.02562 * 20 19 17 46 46 H 1.09001 * 109.50097 * 181.31984 * 25 14 13 47 47 H 1.09001 * 109.50034 * 301.41653 * 25 14 13 48 48 H 1.08999 * 109.58392 * 353.37599 * 26 11 9 49 49 H 1.09000 * 109.58493 * 113.79991 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 1.2762 -1.2161 2.1072 7 7 2.0307 -1.7389 3.0133 8 6 3.3029 -1.5253 2.6437 9 6 4.5190 -1.9463 3.3747 10 8 5.6130 -1.8107 2.8631 11 7 4.4130 -2.4801 4.6078 12 6 5.5901 -3.0425 5.2836 13 6 5.7260 -2.3891 6.6625 14 6 4.4160 -2.5604 7.4350 15 6 4.5595 -1.9390 8.8258 16 7 4.1103 -3.9871 7.5671 17 6 2.9786 -4.3866 8.2264 18 1 2.3111 -3.6500 8.6487 19 6 2.6892 -5.7384 8.3520 20 7 3.5028 -6.6362 7.8379 21 14 1.1449 -6.2834 9.2507 22 1 1.4506 -6.4691 10.6921 23 1 0.0915 -5.2480 9.0975 24 1 0.6650 -7.5664 8.6772 25 6 3.2817 -1.8637 6.6801 26 6 3.1181 -2.5111 5.3014 27 7 3.2581 -0.8620 1.5036 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1299 -0.7209 -1.2495 37 1 6.4831 -2.8381 4.6929 38 1 5.4650 -4.1190 5.4001 39 1 5.9413 -1.3274 6.5424 40 1 6.5377 -2.8650 7.2128 41 1 5.3668 -2.4353 9.3641 42 1 4.7869 -0.8775 8.7278 43 1 3.6267 -2.0613 9.3763 44 1 4.7100 -4.6487 7.1882 45 1 4.3049 -6.3532 7.3715 46 1 2.3536 -1.9661 7.2425 47 1 3.5200 -0.8069 6.5597 48 1 2.3801 -1.9562 4.7222 49 1 2.7915 -3.5443 5.4193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281499272.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:24 Heat of formation + Delta-G solvation = 97.975067 kcal Electronic energy + Delta-G solvation = -30642.604468 eV Core-core repulsion = 26643.099186 eV Total energy + Delta-G solvation = -3999.505282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.66697 -41.46300 -39.44107 -38.65512 -36.38011 -34.77963 -34.46811 -33.68528 -32.10150 -30.60436 -29.41279 -28.59876 -28.55024 -26.72482 -25.80952 -25.61127 -24.28322 -23.91951 -21.96111 -21.51580 -20.13950 -18.98692 -18.62950 -18.53757 -17.81921 -17.46628 -16.90770 -16.32601 -15.97780 -15.59587 -15.36421 -15.31488 -15.23534 -15.10541 -14.88015 -14.53941 -14.24963 -14.04424 -13.64723 -13.46632 -13.30390 -13.26128 -13.21953 -12.86477 -12.84413 -12.72283 -12.68411 -12.61394 -12.48159 -12.21615 -12.17181 -12.13375 -12.10420 -11.84569 -11.74092 -11.55778 -11.51206 -11.19624 -10.94015 -10.75808 -9.84622 -8.96495 -8.22575 -5.15819 -0.22035 0.17741 0.61616 1.53156 1.61661 1.71297 1.76278 1.84323 2.62038 2.78179 2.87350 3.45785 3.47043 3.53670 3.60425 3.67868 3.75210 3.88449 3.97465 4.07647 4.14928 4.29308 4.38490 4.39707 4.51283 4.53367 4.55087 4.59083 4.60971 4.71110 4.71558 4.77462 4.85855 4.94216 5.00074 5.00649 5.07261 5.08718 5.09665 5.15904 5.19581 5.22044 5.32439 5.49959 5.56320 5.78650 6.08023 6.63115 6.64669 7.00909 7.23615 8.14627 8.26599 9.29396 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.003188 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.399165 B = 8780.888024 C = 9725.322018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.157 3.843 3 C -0.156 4.156 4 C -0.158 4.158 5 N -0.106 5.106 6 N -0.060 5.060 7 N -0.270 5.270 8 C 0.116 3.884 9 C 0.612 3.388 10 O -0.546 6.546 11 N -0.573 5.573 12 C 0.119 3.881 13 C -0.121 4.121 14 C 0.192 3.808 15 C -0.142 4.142 16 N -0.735 5.735 17 C -0.297 4.297 18 H 0.067 0.933 19 C -0.108 4.108 20 N -0.984 5.984 21 Si 1.118 2.882 22 H -0.291 1.291 23 H -0.274 1.274 24 H -0.301 1.301 25 C -0.125 4.125 26 C 0.104 3.896 27 N -0.252 5.252 28 H 0.070 0.930 29 H 0.129 0.871 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.131 0.869 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.132 0.868 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.358 0.642 45 H 0.243 0.757 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.120 0.880 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 19.499 -17.902 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.079 3.921 3 C -0.214 4.214 4 C -0.216 4.216 5 N -0.023 5.023 6 N -0.052 5.052 7 N -0.143 5.143 8 C -0.167 4.167 9 C 0.395 3.605 10 O -0.422 6.422 11 N -0.304 5.304 12 C -0.002 4.002 13 C -0.159 4.159 14 C 0.102 3.898 15 C -0.201 4.201 16 N -0.377 5.377 17 C -0.429 4.429 18 H 0.085 0.915 19 C -0.299 4.299 20 N -0.634 5.634 21 Si 0.946 3.054 22 H -0.218 1.218 23 H -0.199 1.199 24 H -0.228 1.228 25 C -0.165 4.165 26 C -0.018 4.018 27 N -0.106 5.106 28 H 0.089 0.911 29 H 0.148 0.852 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.149 0.851 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.150 0.850 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.191 0.809 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.137 0.863 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.693 18.518 -17.726 26.259 hybrid contribution 1.639 0.335 -0.067 1.674 sum -4.055 18.853 -17.794 26.239 Atomic orbital electron populations 1.22186 0.87982 1.04681 1.05991 1.22282 0.98103 0.93564 0.78139 1.22307 1.02582 0.90748 1.05793 1.22319 1.02570 1.01060 0.95639 1.51373 1.00045 1.32560 1.18346 1.78858 1.21834 1.08924 0.95565 1.76051 1.00248 1.18651 1.19353 1.25104 0.94330 1.03231 0.94015 1.16317 0.84726 0.78229 0.81266 1.90770 1.26532 1.56621 1.68304 1.47890 1.11980 1.56394 1.14183 1.21682 0.87544 0.97312 0.93699 1.22054 0.97734 1.02086 0.94031 1.19801 0.92597 0.83887 0.93493 1.22099 1.00879 0.99772 0.97340 1.42669 1.26310 1.01612 1.67146 1.20169 1.00645 0.93252 1.28795 0.91481 1.26773 1.07009 0.92490 1.03603 1.70954 1.14883 1.35441 1.42122 0.82705 0.72732 0.75110 0.74844 1.21820 1.19918 1.22848 1.22210 1.00556 0.98706 0.95054 1.22291 0.83542 1.02265 0.93751 1.74930 1.04019 1.17142 1.14517 0.91133 0.85238 0.91441 0.91686 0.85078 0.91897 0.92238 0.85011 0.91729 0.88432 0.92153 0.89435 0.89706 0.93832 0.91363 0.94144 0.80890 0.94646 0.91713 0.91160 0.86275 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 7.90 71.98 0.57 -0.69 16 2 C 0.16 2.00 1.30 3.61 0.00 2.01 16 3 C -0.16 -1.41 8.66 71.98 0.62 -0.79 16 4 C -0.16 -1.56 8.67 71.98 0.62 -0.93 16 5 N -0.11 -2.52 3.72 -152.25 -0.57 -3.09 16 6 N -0.06 -1.69 12.21 37.02 0.45 -1.24 16 7 N -0.27 -8.95 9.07 -52.36 -0.47 -9.43 16 8 C 0.12 3.95 7.80 137.15 1.07 5.02 16 9 C 0.61 22.41 7.70 86.83 0.67 23.08 16 10 O -0.55 -21.78 16.52 -3.82 -0.06 -21.84 16 11 N -0.57 -20.50 2.97 -822.13 -2.44 -22.94 16 12 C 0.12 4.07 6.17 86.36 0.53 4.60 16 13 C -0.12 -3.80 4.96 30.67 0.15 -3.65 16 14 C 0.19 7.08 0.74 3.63 0.00 7.08 16 15 C -0.14 -4.88 8.44 71.98 0.61 -4.27 16 16 N -0.73 -34.35 4.13 -303.22 -1.25 -35.60 16 17 C -0.30 -15.68 8.68 84.03 0.73 -14.95 16 18 H 0.07 3.49 6.70 -2.91 -0.02 3.47 16 19 C -0.11 -6.14 5.50 84.86 0.47 -5.67 16 20 N -0.98 -61.12 13.70 21.65 0.30 -60.82 16 21 Si 1.12 52.43 29.92 68.60 2.05 54.48 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 25 C -0.13 -4.43 4.71 30.67 0.14 -4.28 16 26 C 0.10 3.87 5.85 86.36 0.51 4.37 16 27 N -0.25 -7.48 11.86 -52.31 -0.62 -8.10 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 3.15 7.00 -2.39 -0.02 3.13 16 38 H 0.06 2.28 6.94 -2.39 -0.02 2.27 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.41 16 40 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.51 7.27 -2.39 -0.02 1.49 16 44 H 0.36 17.90 5.30 -92.71 -0.49 17.41 16 45 H 0.24 15.01 6.78 -92.70 -0.63 14.38 16 46 H 0.06 2.46 7.31 -2.39 -0.02 2.44 16 47 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 48 H 0.12 4.26 4.17 -19.78 -0.08 4.18 16 49 H 0.05 2.39 7.74 -2.39 -0.02 2.37 16 Total: -1.00 -73.19 385.66 4.62 -68.57 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.54 Total: 29.08 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 6.70 Total: 10.92 kcal Atomic # 7 Polarization: -136.60 SS G_CDS: -4.61 Total: -141.21 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.06 Total: -21.84 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 2.05 Total: 54.48 kcal Total: -73.19 4.62 -68.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281499272.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.546 kcal (2) G-P(sol) polarization free energy of solvation -73.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds