Wall clock time and date at job start Tue Mar 31 2020 19:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47299 * 2 1 4 4 C 1.50703 * 109.47089 * 119.99920 * 2 1 3 5 5 N 1.31072 * 126.65854 * 300.04018 * 4 2 1 6 6 N 1.28843 * 107.98875 * 179.97438 * 5 4 2 7 7 N 1.28734 * 109.39820 * 359.73954 * 6 5 4 8 8 N 1.29022 * 108.80510 * 0.43255 * 7 6 5 9 9 C 1.46507 * 126.43220 * 179.83178 * 8 7 6 10 10 C 1.50697 * 109.47005 * 269.68917 * 9 8 7 11 11 O 1.21283 * 120.00521 * 359.73077 * 10 9 8 12 12 N 1.34784 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99971 * 359.72768 * 12 10 9 14 14 C 1.46499 * 119.99893 * 179.72962 * 12 10 9 15 15 H 1.08994 * 109.47156 * 359.97438 * 14 12 10 16 16 C 1.52993 * 109.47238 * 120.00062 * 14 12 10 17 17 N 1.46499 * 109.47293 * 304.99842 * 16 14 12 18 18 C 1.36939 * 120.00485 * 179.97438 * 17 16 14 19 19 H 1.08009 * 119.99448 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00356 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99816 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47416 * 60.00529 * 22 20 18 24 24 H 1.48507 * 109.46708 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47167 * 300.00045 * 22 20 18 26 26 C 1.53001 * 109.46682 * 239.99962 * 14 12 10 27 27 C 1.53000 * 117.49825 * 248.74899 * 26 14 12 28 28 C 1.52998 * 117.49818 * 180.08962 * 26 14 12 29 29 H 1.09001 * 109.46987 * 300.00499 * 1 2 3 30 30 H 1.08998 * 109.46556 * 60.00217 * 1 2 3 31 31 H 1.08997 * 109.46726 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47435 * 239.99777 * 2 1 3 33 33 H 1.08999 * 109.47399 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46898 * 300.00262 * 3 2 1 35 35 H 1.09000 * 109.47059 * 59.99547 * 3 2 1 36 36 H 1.09001 * 109.46566 * 149.69713 * 9 8 7 37 37 H 1.08993 * 109.47390 * 29.69503 * 9 8 7 38 38 H 1.08999 * 109.47256 * 89.99766 * 13 12 10 39 39 H 1.08998 * 109.47416 * 209.99869 * 13 12 10 40 40 H 1.09008 * 109.47058 * 330.00468 * 13 12 10 41 41 H 1.09008 * 109.47366 * 64.99919 * 16 14 12 42 42 H 1.09004 * 109.47335 * 184.99304 * 16 14 12 43 43 H 0.97003 * 119.99958 * 359.97438 * 17 16 14 44 44 H 0.97003 * 120.00085 * 180.02562 * 21 20 18 45 45 H 1.08995 * 115.55390 * 34.41468 * 26 14 12 46 46 H 1.09002 * 117.49673 * 359.97438 * 27 26 14 47 47 H 1.08998 * 117.50059 * 145.02495 * 27 26 14 48 48 H 1.08997 * 117.50060 * 214.98085 * 28 26 14 49 49 H 1.09003 * 117.49489 * 359.97431 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7969 -0.3787 2.4765 6 7 2.3980 -1.2292 3.2350 7 7 3.0062 -2.0980 2.5052 8 7 2.8094 -1.8088 1.2634 9 6 3.3290 -2.5421 0.1063 10 6 4.6670 -1.9729 -0.2896 11 8 5.1378 -1.0428 0.3303 12 7 5.3378 -2.4936 -1.3363 13 6 4.7689 -3.6167 -2.0853 14 6 6.6358 -1.9364 -1.7248 15 1 6.8925 -1.1139 -1.0574 16 6 7.7070 -3.0245 -1.6297 17 7 7.6986 -3.6017 -0.2832 18 6 8.5775 -4.6012 0.0389 19 1 9.2771 -4.9638 -0.6997 20 6 8.5699 -5.1477 1.3149 21 7 7.7176 -4.7054 2.2151 22 14 9.7692 -6.5107 1.7543 23 1 11.1603 -6.0204 1.5824 24 1 9.5587 -6.9189 3.1666 25 1 9.5416 -7.6766 0.8633 26 6 6.5592 -1.4205 -3.1632 27 6 7.3545 -2.1777 -4.2286 28 6 7.8238 -0.7984 -3.7588 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 2.6327 -2.4467 -0.7268 37 1 3.4440 -3.5947 0.3650 38 1 4.1557 -3.2355 -2.9019 39 1 5.5748 -4.2283 -2.4911 40 1 4.1528 -4.2221 -1.4204 41 1 7.4978 -3.8054 -2.3610 42 1 8.6857 -2.5896 -1.8326 43 1 7.0705 -3.2758 0.3803 44 1 7.7125 -5.0870 3.1069 45 1 5.6009 -0.9937 -3.4592 46 1 7.9326 -3.0431 -3.9047 47 1 6.9197 -2.2486 -5.2256 48 1 7.6975 0.0374 -4.4469 49 1 8.7101 -0.7564 -3.1258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283545101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:08 Heat of formation + Delta-G solvation = 130.193006 kcal Electronic energy + Delta-G solvation = -30740.405853 eV Core-core repulsion = 26742.297646 eV Total energy + Delta-G solvation = -3998.108207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.04560 -40.23805 -38.07375 -36.28745 -35.33665 -35.16549 -34.14250 -31.50958 -31.19282 -29.50706 -27.90650 -27.46465 -26.61706 -24.52363 -24.36652 -23.22699 -22.65098 -22.01940 -21.03984 -20.24700 -18.81646 -17.94384 -17.41118 -17.16867 -16.44600 -16.18659 -15.93301 -15.53592 -15.01924 -14.80292 -14.50622 -14.31097 -13.72190 -13.53793 -13.45738 -13.21048 -13.03295 -12.93124 -12.73436 -12.45882 -12.35906 -12.25578 -12.02563 -11.80117 -11.65368 -11.58532 -11.40582 -11.36837 -11.19180 -11.15161 -10.87479 -10.83860 -10.79892 -10.48256 -10.16467 -9.98089 -9.87962 -9.74398 -9.63958 -8.91086 -8.57139 -6.96816 -5.76367 -3.08111 1.32248 1.90538 2.42146 2.48644 2.94722 3.41567 3.46349 3.48843 3.80076 3.83977 4.10997 4.19447 4.33232 4.54325 4.67726 4.72509 4.73980 4.86606 4.93439 4.99746 5.04508 5.12013 5.23414 5.34595 5.36879 5.44814 5.50648 5.50834 5.60823 5.63586 5.65298 5.67532 5.78006 5.79480 5.84694 5.87635 5.92996 6.03733 6.12148 6.15316 6.18027 6.24970 6.32323 6.52810 6.72719 7.33821 7.65239 8.07293 8.39606 8.79377 9.51153 10.06891 10.41576 11.44873 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.004178 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.779667 B = 6699.439346 C = 8857.240994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.008 4.008 3 C -0.143 4.143 4 C 0.193 3.807 5 N -0.304 5.304 6 N -0.078 5.078 7 N -0.068 5.068 8 N -0.290 5.290 9 C 0.094 3.906 10 C 0.507 3.493 11 O -0.517 6.517 12 N -0.585 5.585 13 C 0.075 3.925 14 C 0.162 3.838 15 H 0.104 0.896 16 C 0.143 3.857 17 N -0.728 5.728 18 C -0.249 4.249 19 H 0.068 0.932 20 C -0.008 4.008 21 N -0.924 5.924 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.286 1.286 26 C -0.159 4.159 27 C -0.182 4.182 28 C -0.172 4.172 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.027 0.973 42 H 0.029 0.971 43 H 0.385 0.615 44 H 0.257 0.743 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.039 7.522 -16.130 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 C -0.202 4.202 4 C -0.085 4.085 5 N -0.152 5.152 6 N -0.072 5.072 7 N -0.053 5.053 8 N -0.091 5.091 9 C -0.031 4.031 10 C 0.291 3.709 11 O -0.392 6.392 12 N -0.317 5.317 13 C -0.068 4.068 14 C 0.059 3.941 15 H 0.122 0.878 16 C 0.015 3.985 17 N -0.373 5.373 18 C -0.380 4.380 19 H 0.086 0.914 20 C -0.205 4.205 21 N -0.572 5.572 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.213 1.213 26 C -0.179 4.179 27 C -0.219 4.219 28 C -0.210 4.210 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.152 0.848 37 H 0.163 0.837 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.047 0.953 43 H 0.219 0.781 44 H 0.067 0.933 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.542 7.712 -14.325 21.167 hybrid contribution 0.704 -0.957 -0.508 1.293 sum -12.838 6.755 -14.834 20.748 Atomic orbital electron populations 1.21844 0.92137 1.02609 1.03515 1.19731 0.97104 0.96495 0.89671 1.21822 1.02090 0.93111 1.03148 1.25986 0.95466 0.89177 0.97915 1.74892 1.20869 1.21151 0.98307 1.78617 1.07103 0.99023 1.22429 1.79074 1.17883 1.21340 0.87036 1.47903 1.33507 1.20677 1.07002 1.22048 0.96054 0.99137 0.85905 1.20103 0.86083 0.83893 0.80831 1.90812 1.68195 1.28481 1.51668 1.47507 1.20378 1.33632 1.30232 1.21848 1.00030 0.88871 0.96090 1.20913 0.82129 0.97618 0.93406 0.87769 1.21113 0.94574 0.93016 0.89815 1.42291 1.43585 1.43335 1.08053 1.19099 1.11958 1.10956 0.96022 0.91353 1.24761 0.99327 1.00091 0.96284 1.69664 1.38337 1.44672 1.04485 0.86311 0.80826 0.81910 0.77329 1.21274 1.21619 1.21297 1.22538 0.96521 1.04897 0.93925 1.23206 1.04058 0.96327 0.98296 1.22965 0.98039 0.96512 1.03466 0.90952 0.90976 0.92411 0.89382 0.91802 0.91142 0.91082 0.84849 0.83704 0.92563 0.89494 0.91322 0.95506 0.95342 0.78071 0.93257 0.87880 0.87440 0.89171 0.88955 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.18 37.16 0.34 -0.69 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -1.35 9.18 37.16 0.34 -1.01 16 4 C 0.19 2.73 6.64 -155.44 -1.03 1.70 16 5 N -0.30 -5.20 12.36 32.70 0.40 -4.79 16 6 N -0.08 -1.54 13.43 60.35 0.81 -0.73 16 7 N -0.07 -1.32 13.29 60.35 0.80 -0.52 16 8 N -0.29 -4.49 2.83 -59.44 -0.17 -4.66 16 9 C 0.09 1.13 5.12 -5.19 -0.03 1.10 16 10 C 0.51 7.92 7.45 -10.98 -0.08 7.83 16 11 O -0.52 -10.54 15.76 5.56 0.09 -10.46 16 12 N -0.58 -8.12 2.24 -173.94 -0.39 -8.51 16 13 C 0.07 0.75 9.61 59.85 0.58 1.33 16 14 C 0.16 2.50 2.59 -67.93 -0.18 2.33 16 15 H 0.10 1.94 6.90 -51.93 -0.36 1.58 16 16 C 0.14 2.66 4.14 -4.05 -0.02 2.64 16 17 N -0.73 -17.98 5.43 -59.91 -0.33 -18.31 16 18 C -0.25 -6.85 9.99 -15.06 -0.15 -7.00 16 19 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.92 -28.43 13.06 55.49 0.72 -27.71 16 22 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.16 -1.83 5.48 -90.62 -0.50 -2.32 16 27 C -0.18 -1.88 9.59 -26.69 -0.26 -2.13 16 28 C -0.17 -1.85 9.94 -26.69 -0.27 -2.12 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.63 6.85 -51.93 -0.36 0.27 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.13 0.87 7.10 -51.93 -0.37 0.50 16 37 H 0.15 1.64 7.39 -51.93 -0.38 1.25 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 1.00 6.53 -51.93 -0.34 0.66 16 40 H 0.07 0.60 6.44 -51.92 -0.33 0.27 16 41 H 0.03 0.48 5.34 -51.92 -0.28 0.20 16 42 H 0.03 0.55 7.44 -51.93 -0.39 0.16 16 43 H 0.39 10.45 7.07 -40.82 -0.29 10.16 16 44 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 45 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.11 1.25 5.80 -51.93 -0.30 0.95 16 47 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.10 1.17 7.66 -51.93 -0.40 0.77 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -37.33 399.01 -6.27 -43.60 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.56 Total: 7.71 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.64 Total: 0.97 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: 1.86 Total: -65.22 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.33 -6.27 -43.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283545101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.797 kcal (2) G-P(sol) polarization free energy of solvation -37.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds