Wall clock time and date at job start Tue Mar 31 2020 19:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47299 * 2 1 4 4 C 1.50703 * 109.47089 * 119.99920 * 2 1 3 5 5 N 1.31072 * 126.65854 * 300.04018 * 4 2 1 6 6 N 1.28843 * 107.98875 * 179.97438 * 5 4 2 7 7 N 1.28734 * 109.39820 * 359.73954 * 6 5 4 8 8 N 1.29022 * 108.80510 * 0.43255 * 7 6 5 9 9 C 1.46507 * 126.43220 * 179.83178 * 8 7 6 10 10 C 1.50697 * 109.47005 * 269.68917 * 9 8 7 11 11 O 1.21283 * 120.00521 * 359.73077 * 10 9 8 12 12 N 1.34784 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99971 * 359.72768 * 12 10 9 14 14 C 1.46499 * 119.99893 * 179.72962 * 12 10 9 15 15 H 1.08994 * 109.47156 * 359.97438 * 14 12 10 16 16 C 1.52993 * 109.47238 * 120.00062 * 14 12 10 17 17 N 1.46499 * 109.47293 * 304.99842 * 16 14 12 18 18 C 1.36939 * 120.00485 * 179.97438 * 17 16 14 19 19 H 1.08009 * 119.99448 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00356 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99816 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47416 * 60.00529 * 22 20 18 24 24 H 1.48507 * 109.46708 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47167 * 300.00045 * 22 20 18 26 26 C 1.53001 * 109.46682 * 239.99962 * 14 12 10 27 27 C 1.53000 * 117.49825 * 248.74899 * 26 14 12 28 28 C 1.52998 * 117.49818 * 180.08962 * 26 14 12 29 29 H 1.09001 * 109.46987 * 300.00499 * 1 2 3 30 30 H 1.08998 * 109.46556 * 60.00217 * 1 2 3 31 31 H 1.08997 * 109.46726 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47435 * 239.99777 * 2 1 3 33 33 H 1.08999 * 109.47399 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46898 * 300.00262 * 3 2 1 35 35 H 1.09000 * 109.47059 * 59.99547 * 3 2 1 36 36 H 1.09001 * 109.46566 * 149.69713 * 9 8 7 37 37 H 1.08993 * 109.47390 * 29.69503 * 9 8 7 38 38 H 1.08999 * 109.47256 * 89.99766 * 13 12 10 39 39 H 1.08998 * 109.47416 * 209.99869 * 13 12 10 40 40 H 1.09008 * 109.47058 * 330.00468 * 13 12 10 41 41 H 1.09008 * 109.47366 * 64.99919 * 16 14 12 42 42 H 1.09004 * 109.47335 * 184.99304 * 16 14 12 43 43 H 0.97003 * 119.99958 * 359.97438 * 17 16 14 44 44 H 0.97003 * 120.00085 * 180.02562 * 21 20 18 45 45 H 1.08995 * 115.55390 * 34.41468 * 26 14 12 46 46 H 1.09002 * 117.49673 * 359.97438 * 27 26 14 47 47 H 1.08998 * 117.50059 * 145.02495 * 27 26 14 48 48 H 1.08997 * 117.50060 * 214.98085 * 28 26 14 49 49 H 1.09003 * 117.49489 * 359.97431 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7969 -0.3787 2.4765 6 7 2.3980 -1.2292 3.2350 7 7 3.0062 -2.0980 2.5052 8 7 2.8094 -1.8088 1.2634 9 6 3.3290 -2.5421 0.1063 10 6 4.6670 -1.9729 -0.2896 11 8 5.1378 -1.0428 0.3303 12 7 5.3378 -2.4936 -1.3363 13 6 4.7689 -3.6167 -2.0853 14 6 6.6358 -1.9364 -1.7248 15 1 6.8925 -1.1139 -1.0574 16 6 7.7070 -3.0245 -1.6297 17 7 7.6986 -3.6017 -0.2832 18 6 8.5775 -4.6012 0.0389 19 1 9.2771 -4.9638 -0.6997 20 6 8.5699 -5.1477 1.3149 21 7 7.7176 -4.7054 2.2151 22 14 9.7692 -6.5107 1.7543 23 1 11.1603 -6.0204 1.5824 24 1 9.5587 -6.9189 3.1666 25 1 9.5416 -7.6766 0.8633 26 6 6.5592 -1.4205 -3.1632 27 6 7.3545 -2.1777 -4.2286 28 6 7.8238 -0.7984 -3.7588 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 2.6327 -2.4467 -0.7268 37 1 3.4440 -3.5947 0.3650 38 1 4.1557 -3.2355 -2.9019 39 1 5.5748 -4.2283 -2.4911 40 1 4.1528 -4.2221 -1.4204 41 1 7.4978 -3.8054 -2.3610 42 1 8.6857 -2.5896 -1.8326 43 1 7.0705 -3.2758 0.3803 44 1 7.7125 -5.0870 3.1069 45 1 5.6009 -0.9937 -3.4592 46 1 7.9326 -3.0431 -3.9047 47 1 6.9197 -2.2486 -5.2256 48 1 7.6975 0.0374 -4.4469 49 1 8.7101 -0.7564 -3.1258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283545101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:07 Heat of formation + Delta-G solvation = 103.466115 kcal Electronic energy + Delta-G solvation = -30741.564818 eV Core-core repulsion = 26742.297646 eV Total energy + Delta-G solvation = -3999.267172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -45.28878 -41.42056 -39.19982 -37.15472 -36.49560 -36.39341 -35.88076 -33.20081 -32.53368 -30.82770 -29.16989 -28.09746 -27.73882 -26.15505 -25.45402 -24.56256 -24.00003 -23.08903 -22.00512 -21.29105 -20.08991 -19.12684 -19.02275 -18.54076 -17.62422 -17.40548 -17.06783 -16.58734 -16.41512 -16.04696 -15.70455 -15.37512 -15.08263 -14.86958 -14.72227 -14.41161 -14.18663 -14.02013 -13.84608 -13.63431 -13.21143 -13.17514 -13.07768 -13.07241 -12.93178 -12.72960 -12.69728 -12.46570 -12.38258 -12.29146 -12.25769 -12.23965 -12.03073 -11.88834 -11.79337 -11.40020 -11.15334 -10.99468 -10.95565 -10.74067 -9.69459 -9.03613 -7.95997 -5.27007 0.11795 0.85239 1.13959 1.32924 1.43218 1.46500 1.53237 1.87519 2.52506 2.88886 2.94547 3.14363 3.17401 3.37137 3.56014 3.67320 3.80185 3.91713 4.03176 4.06852 4.11081 4.13946 4.18600 4.23377 4.30346 4.37892 4.40800 4.61332 4.65433 4.77183 4.78824 4.84066 4.84711 4.88020 4.92260 4.95149 5.04019 5.07727 5.11667 5.15743 5.24117 5.29451 5.35750 5.37544 5.44853 5.52574 6.21469 6.24710 6.93145 7.29395 7.49809 8.05096 8.27106 9.25855 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.004178 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.779667 B = 6699.439346 C = 8857.240994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.009 4.009 3 C -0.141 4.141 4 C 0.207 3.793 5 N -0.328 5.328 6 N -0.110 5.110 7 N -0.110 5.110 8 N -0.290 5.290 9 C 0.092 3.908 10 C 0.499 3.501 11 O -0.578 6.578 12 N -0.580 5.580 13 C 0.064 3.936 14 C 0.170 3.830 15 H 0.062 0.938 16 C 0.144 3.856 17 N -0.742 5.742 18 C -0.245 4.245 19 H 0.079 0.921 20 C -0.073 4.073 21 N -0.967 5.967 22 Si 0.971 3.029 23 H -0.281 1.281 24 H -0.301 1.301 25 H -0.270 1.270 26 C -0.157 4.157 27 C -0.166 4.166 28 C -0.177 4.177 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.034 0.966 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.199 0.801 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.021 0.979 43 H 0.369 0.631 44 H 0.248 0.752 45 H 0.128 0.872 46 H 0.091 0.909 47 H 0.121 0.879 48 H 0.116 0.884 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.573 6.990 -20.718 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.199 4.199 4 C -0.071 4.071 5 N -0.177 5.177 6 N -0.103 5.103 7 N -0.096 5.096 8 N -0.091 5.091 9 C -0.031 4.031 10 C 0.285 3.715 11 O -0.457 6.457 12 N -0.311 5.311 13 C -0.077 4.077 14 C 0.066 3.934 15 H 0.080 0.920 16 C 0.017 3.983 17 N -0.384 5.384 18 C -0.377 4.377 19 H 0.097 0.903 20 C -0.265 4.265 21 N -0.617 5.617 22 Si 0.800 3.200 23 H -0.207 1.207 24 H -0.228 1.228 25 H -0.195 1.195 26 C -0.176 4.176 27 C -0.202 4.202 28 C -0.215 4.215 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.053 0.947 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.216 0.784 37 H 0.169 0.831 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.039 0.961 43 H 0.201 0.799 44 H 0.057 0.943 45 H 0.146 0.854 46 H 0.109 0.891 47 H 0.139 0.861 48 H 0.134 0.866 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.059 7.143 -19.013 25.284 hybrid contribution 1.249 -0.724 0.768 1.635 sum -13.810 6.419 -18.245 23.765 Atomic orbital electron populations 1.21850 0.90006 1.03363 1.04327 1.20168 0.98661 0.95932 0.88332 1.21820 1.00197 0.93586 1.04290 1.26961 0.93501 0.88104 0.98559 1.74795 1.21715 1.21443 0.99763 1.78555 1.08125 0.99896 1.23760 1.78971 1.19161 1.22474 0.89025 1.48113 1.33205 1.21184 1.06554 1.22492 0.95493 0.98563 0.86579 1.20723 0.87217 0.83258 0.80312 1.90792 1.69928 1.31420 1.53603 1.47607 1.19423 1.34104 1.29955 1.22215 1.00255 0.87837 0.97408 1.20605 0.82209 0.95148 0.95444 0.91968 1.21301 0.95606 0.94275 0.87124 1.42518 1.42772 1.43069 1.10089 1.19560 1.11565 1.10529 0.96032 0.90306 1.25574 1.01453 1.02996 0.96491 1.69863 1.40780 1.46620 1.04470 0.85250 0.78696 0.79555 0.76469 1.20708 1.22775 1.19546 1.22391 0.97998 1.05886 0.91310 1.23220 1.02806 0.95148 0.99042 1.23044 0.96905 0.97979 1.03572 0.92679 0.87632 0.91713 0.85995 0.94673 0.87408 0.92564 0.78371 0.83088 0.87577 0.90873 0.89926 0.93307 0.96097 0.79897 0.94324 0.85423 0.89093 0.86104 0.86584 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.18 71.98 0.66 -0.85 16 2 C -0.01 -0.15 3.26 -11.54 -0.04 -0.19 16 3 C -0.14 -2.41 9.18 71.98 0.66 -1.75 16 4 C 0.21 5.76 6.64 138.14 0.92 6.67 16 5 N -0.33 -11.64 12.36 -50.45 -0.62 -12.27 16 6 N -0.11 -4.57 13.43 37.01 0.50 -4.07 16 7 N -0.11 -4.50 13.29 37.02 0.49 -4.01 16 8 N -0.29 -8.95 2.83 -341.98 -0.97 -9.92 16 9 C 0.09 2.04 5.12 85.63 0.44 2.48 16 10 C 0.50 15.37 7.45 87.65 0.65 16.03 16 11 O -0.58 -24.67 15.76 -3.04 -0.05 -24.72 16 12 N -0.58 -15.22 2.24 -822.60 -1.85 -17.07 16 13 C 0.06 1.06 9.61 127.77 1.23 2.28 16 14 C 0.17 5.17 2.59 44.99 0.12 5.29 16 15 H 0.06 2.44 6.90 -2.39 -0.02 2.42 16 16 C 0.14 5.32 4.14 86.38 0.36 5.68 16 17 N -0.74 -37.41 5.43 -343.45 -1.87 -39.28 16 18 C -0.25 -13.58 9.99 84.03 0.84 -12.74 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 20 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 21 N -0.97 -61.69 13.06 21.65 0.28 -61.41 16 22 Si 0.97 46.75 29.55 68.60 2.03 48.77 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 C -0.16 -3.17 5.48 -10.79 -0.06 -3.23 16 27 C -0.17 -2.84 9.59 30.62 0.29 -2.55 16 28 C -0.18 -3.43 9.94 30.62 0.30 -3.12 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.12 1.13 6.85 -2.39 -0.02 1.11 16 33 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.20 1.56 7.10 -2.39 -0.02 1.55 16 37 H 0.15 3.20 7.39 -2.39 -0.02 3.18 16 38 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 1.45 6.53 -2.39 -0.02 1.44 16 40 H 0.08 1.15 6.44 -2.38 -0.02 1.14 16 41 H 0.05 1.64 5.34 -2.38 -0.01 1.63 16 42 H 0.02 0.82 7.44 -2.38 -0.02 0.80 16 43 H 0.37 20.87 7.07 -92.71 -0.65 20.21 16 44 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 45 H 0.13 2.03 8.14 -2.39 -0.02 2.02 16 46 H 0.09 1.89 5.80 -2.39 -0.01 1.88 16 47 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.08 1.83 7.66 -2.39 -0.02 1.81 16 Total: -1.00 -90.11 399.01 5.10 -85.01 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.32 Total: 28.72 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.84 Total: 10.24 kcal Atomic # 7 Polarization: -143.99 SS G_CDS: -4.03 Total: -148.03 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -90.11 5.10 -85.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283545101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.479 kcal (2) G-P(sol) polarization free energy of solvation -90.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds