Wall clock time and date at job start Tue Mar 31 2020 19:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47585 * 2 1 4 4 C 1.50699 * 109.47479 * 120.00195 * 2 1 3 5 5 N 1.31074 * 126.65784 * 299.97916 * 4 2 1 6 6 N 1.28840 * 107.99011 * 180.02562 * 5 4 2 7 7 N 1.28744 * 109.39557 * 359.97438 * 6 5 4 8 8 N 1.29013 * 108.81146 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.44071 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47535 * 89.96809 * 9 8 7 11 11 O 1.21276 * 119.99860 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00122 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00244 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.01508 * 325.71157 * 13 12 10 15 15 C 1.54275 * 110.02831 * 87.09658 * 13 12 10 16 16 C 1.55017 * 104.13399 * 95.68695 * 15 13 12 17 17 C 1.54889 * 102.75395 * 37.95271 * 16 15 13 18 18 H 1.09000 * 110.60048 * 80.78105 * 17 16 15 19 19 C 1.53001 * 110.48381 * 203.36278 * 17 16 15 20 20 N 1.46494 * 109.47672 * 289.77779 * 19 17 16 21 21 C 1.36929 * 120.00171 * 180.02562 * 20 19 17 22 22 H 1.07993 * 120.00314 * 359.97438 * 21 20 19 23 23 C 1.38821 * 119.99960 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99823 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99956 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47349 * 90.00272 * 25 23 21 27 27 H 1.48506 * 109.47108 * 210.00240 * 25 23 21 28 28 H 1.48497 * 109.47175 * 329.99694 * 25 23 21 29 29 C 1.53868 * 110.03628 * 204.31200 * 13 12 10 30 30 H 1.09003 * 109.47071 * 300.00490 * 1 2 3 31 31 H 1.09002 * 109.47067 * 59.99650 * 1 2 3 32 32 H 1.08999 * 109.47355 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47287 * 240.00239 * 2 1 3 34 34 H 1.08993 * 109.47434 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46747 * 300.00542 * 3 2 1 36 36 H 1.09003 * 109.46863 * 59.99378 * 3 2 1 37 37 H 1.09001 * 109.46867 * 209.97016 * 9 8 7 38 38 H 1.08995 * 109.46647 * 329.96689 * 9 8 7 39 39 H 0.96997 * 120.00041 * 0.02562 * 12 10 9 40 40 H 1.09001 * 110.48429 * 214.35674 * 15 13 12 41 41 H 1.08997 * 110.48284 * 336.99951 * 15 13 12 42 42 H 1.09000 * 110.75985 * 279.62889 * 16 15 13 43 43 H 1.09002 * 110.89737 * 156.33648 * 16 15 13 44 44 H 1.09004 * 109.46869 * 49.77978 * 19 17 16 45 45 H 1.08999 * 109.46812 * 169.77213 * 19 17 16 46 46 H 0.97001 * 119.99722 * 359.97438 * 20 19 17 47 47 H 0.97003 * 119.99613 * 179.97438 * 24 23 21 48 48 H 1.09000 * 110.03182 * 0.02562 * 29 13 12 49 49 H 1.09003 * 110.03042 * 121.43746 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7979 -0.3782 2.4765 6 7 2.3996 -1.2283 3.2349 7 7 3.0113 -2.0945 2.5050 8 7 2.8092 -1.8092 1.2632 9 6 3.3269 -2.5436 0.1061 10 6 2.3441 -3.6153 -0.2896 11 8 1.3126 -3.7519 0.3333 12 7 2.6111 -4.4212 -1.3362 13 6 1.6560 -5.4635 -1.7206 14 1 1.1642 -5.8641 -0.8341 15 6 0.6057 -4.8856 -2.6917 16 6 1.1511 -5.2461 -4.0973 17 6 1.7475 -6.6590 -3.8807 18 1 0.9628 -7.4150 -3.9088 19 6 2.8146 -6.9573 -4.9358 20 7 2.1743 -7.1352 -6.2413 21 6 2.9355 -7.4132 -7.3451 22 1 4.0080 -7.5008 -7.2533 23 6 2.3286 -7.5823 -8.5821 24 7 1.0216 -7.4760 -8.6939 25 14 3.3670 -7.9622 -10.0877 26 1 3.5079 -9.4332 -10.2335 27 1 2.7081 -7.4058 -11.2967 28 1 4.7104 -7.3494 -9.9299 29 6 2.3814 -6.5907 -2.4759 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.4689 -1.8553 -0.7272 38 1 4.2809 -3.0029 0.3646 39 1 3.4360 -4.3117 -1.8347 40 1 -0.3646 -5.3540 -2.5269 41 1 0.5332 -3.8043 -2.5757 42 1 1.9254 -4.5426 -4.4033 43 1 0.3457 -5.2751 -4.8312 44 1 3.5179 -6.1260 -4.9863 45 1 3.3481 -7.8686 -4.6655 46 1 1.2110 -7.0569 -6.3237 47 1 0.5976 -7.5938 -9.5583 48 1 3.4442 -6.3626 -2.5562 49 1 2.2410 -7.5387 -1.9565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284218208.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:00 Heat of formation + Delta-G solvation = 75.733750 kcal Electronic energy + Delta-G solvation = -29091.878965 eV Core-core repulsion = 25091.409227 eV Total energy + Delta-G solvation = -4000.469738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.48264 -40.50358 -38.35388 -36.57709 -35.71545 -35.00360 -33.60206 -31.81870 -31.25686 -29.73586 -28.93389 -27.66899 -27.62773 -24.76715 -24.57016 -23.72208 -22.29211 -21.79168 -20.92912 -20.39846 -19.70188 -18.32308 -18.11425 -17.10504 -16.75038 -16.53432 -15.93136 -15.84110 -15.35275 -14.96907 -14.74532 -14.39947 -13.92080 -13.78782 -13.71503 -13.47089 -13.26283 -13.13290 -12.92126 -12.65208 -12.48585 -12.21571 -12.11104 -11.86830 -11.80863 -11.67226 -11.65088 -11.63444 -11.25665 -11.18141 -10.98207 -10.90156 -10.66084 -10.44369 -10.39378 -10.34448 -10.18526 -10.04237 -9.73690 -9.44869 -8.93097 -6.98028 -5.82543 -3.11176 0.86972 1.44231 1.94096 2.00586 2.63824 3.38488 3.43599 3.45353 3.47131 3.70328 3.96274 4.02012 4.21970 4.48244 4.48594 4.54471 4.59900 4.62607 4.73672 4.88240 5.09477 5.18098 5.27820 5.30254 5.36425 5.39776 5.41979 5.43575 5.47766 5.50020 5.59049 5.67035 5.70878 5.72968 5.76129 5.83396 5.87764 5.96880 6.14269 6.16683 6.30915 6.41438 6.45976 6.70324 6.81485 6.94679 7.60852 7.63471 8.34726 8.36514 9.47735 10.06031 10.40273 11.40286 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.002032 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.929055 B =13775.183988 C =14271.065570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.204 3.796 5 N -0.300 5.300 6 N -0.073 5.073 7 N -0.086 5.086 8 N -0.295 5.295 9 C 0.090 3.910 10 C 0.499 3.501 11 O -0.519 6.519 12 N -0.708 5.708 13 C 0.142 3.858 14 H 0.090 0.910 15 C -0.132 4.132 16 C -0.111 4.111 17 C -0.099 4.099 18 H 0.078 0.922 19 C 0.162 3.838 20 N -0.732 5.732 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.122 4.122 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.405 0.595 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.017 0.983 45 H 0.017 0.983 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.074 0.926 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.829 14.712 16.882 22.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.074 4.074 5 N -0.148 5.148 6 N -0.067 5.067 7 N -0.072 5.072 8 N -0.096 5.096 9 C -0.036 4.036 10 C 0.282 3.718 11 O -0.394 6.394 12 N -0.361 5.361 13 C 0.038 3.962 14 H 0.108 0.892 15 C -0.171 4.171 16 C -0.149 4.149 17 C -0.118 4.118 18 H 0.096 0.904 19 C 0.034 3.966 20 N -0.376 5.376 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.161 4.161 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.240 0.760 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.035 0.965 45 H 0.034 0.966 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.092 0.908 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.342 14.397 18.677 23.817 hybrid contribution 0.737 -0.412 -2.191 2.348 sum 4.079 13.985 16.486 22.000 Atomic orbital electron populations 1.21833 0.91610 1.03309 1.03508 1.19813 0.97982 0.96067 0.89436 1.21859 1.01198 0.93357 1.03828 1.26118 0.94503 0.88760 0.98029 1.74960 1.19751 1.21780 0.98334 1.78613 1.06844 0.98810 1.22387 1.78888 1.20299 1.20802 0.87188 1.47849 1.34819 1.20076 1.06815 1.22021 0.99290 0.95778 0.86519 1.20267 0.87397 0.82927 0.81253 1.90830 1.26036 1.69884 1.52648 1.46122 1.24200 1.34417 1.31344 1.21773 0.89461 0.86823 0.98155 0.89235 1.22810 0.98244 1.00620 0.95411 1.22524 1.00626 0.96245 0.95480 1.22189 0.98744 0.97610 0.93228 0.90368 1.20674 0.93145 0.97135 0.85644 1.42345 1.06941 1.85788 1.02514 1.19212 0.90931 1.40257 0.86776 0.91275 1.24746 0.95726 1.02797 0.97739 1.69655 1.07838 1.56691 1.23960 0.86198 0.79149 0.77977 0.82899 1.21713 1.21756 1.20799 1.22458 1.00010 0.97530 0.96056 0.91044 0.90742 0.91871 0.89117 0.92372 0.90631 0.90910 0.84203 0.83848 0.76012 0.90730 0.91713 0.91487 0.90866 0.96503 0.96559 0.78240 0.93487 0.90769 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.18 37.16 0.34 -0.68 16 2 C -0.01 -0.07 3.26 -91.77 -0.30 -0.37 16 3 C -0.14 -0.73 9.18 37.16 0.34 -0.39 16 4 C 0.20 2.05 6.64 -155.43 -1.03 1.01 16 5 N -0.30 -3.90 12.36 32.70 0.40 -3.49 16 6 N -0.07 -1.05 13.43 60.35 0.81 -0.24 16 7 N -0.09 -1.12 13.29 60.35 0.80 -0.32 16 8 N -0.30 -2.90 2.83 -59.44 -0.17 -3.06 16 9 C 0.09 0.49 6.57 -5.20 -0.03 0.45 16 10 C 0.50 4.27 7.89 -10.99 -0.09 4.19 16 11 O -0.52 -7.01 16.10 5.56 0.09 -6.92 16 12 N -0.71 -5.07 5.04 -52.72 -0.27 -5.33 16 13 C 0.14 1.36 3.23 -66.81 -0.22 1.15 16 14 H 0.09 0.99 7.59 -51.93 -0.39 0.60 16 15 C -0.13 -1.42 6.55 -25.00 -0.16 -1.58 16 16 C -0.11 -1.44 6.19 -24.67 -0.15 -1.59 16 17 C -0.10 -1.36 2.89 -88.96 -0.26 -1.61 16 18 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 19 C 0.16 2.91 5.54 -4.04 -0.02 2.89 16 20 N -0.73 -17.49 5.49 -59.91 -0.33 -17.82 16 21 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 25 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 C -0.12 -1.23 6.14 -25.62 -0.16 -1.39 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.40 6.85 -51.93 -0.36 0.04 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.14 0.20 7.13 -51.93 -0.37 -0.17 16 38 H 0.14 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.40 1.77 8.31 -40.82 -0.34 1.43 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 42 H 0.07 0.87 7.97 -51.93 -0.41 0.45 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.02 0.30 8.02 -51.93 -0.42 -0.11 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.38 9.69 7.64 -40.82 -0.31 9.38 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.07 0.66 7.31 -51.93 -0.38 0.28 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 403.89 15.07 6.09 6.09 Total: -1.00 -36.21 403.89 -6.87 -43.08 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.02 Total: 3.06 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -1.99 Total: -5.05 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 1.98 Total: -57.01 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: 0.09 Total: -6.92 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.21 -6.87 -43.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284218208.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.818 kcal (2) G-P(sol) polarization free energy of solvation -36.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds