Wall clock time and date at job start Tue Mar 31 2020 19:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47585 * 2 1 4 4 C 1.50699 * 109.47479 * 120.00195 * 2 1 3 5 5 N 1.31074 * 126.65784 * 299.97916 * 4 2 1 6 6 N 1.28840 * 107.99011 * 180.02562 * 5 4 2 7 7 N 1.28744 * 109.39557 * 359.97438 * 6 5 4 8 8 N 1.29013 * 108.81146 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.44071 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47535 * 89.96809 * 9 8 7 11 11 O 1.21276 * 119.99860 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00122 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00244 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.01508 * 325.71157 * 13 12 10 15 15 C 1.54275 * 110.02831 * 87.09658 * 13 12 10 16 16 C 1.55017 * 104.13399 * 95.68695 * 15 13 12 17 17 C 1.54889 * 102.75395 * 37.95271 * 16 15 13 18 18 H 1.09000 * 110.60048 * 80.78105 * 17 16 15 19 19 C 1.53001 * 110.48381 * 203.36278 * 17 16 15 20 20 N 1.46494 * 109.47672 * 289.77779 * 19 17 16 21 21 C 1.36929 * 120.00171 * 180.02562 * 20 19 17 22 22 H 1.07993 * 120.00314 * 359.97438 * 21 20 19 23 23 C 1.38821 * 119.99960 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99823 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99956 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47349 * 90.00272 * 25 23 21 27 27 H 1.48506 * 109.47108 * 210.00240 * 25 23 21 28 28 H 1.48497 * 109.47175 * 329.99694 * 25 23 21 29 29 C 1.53868 * 110.03628 * 204.31200 * 13 12 10 30 30 H 1.09003 * 109.47071 * 300.00490 * 1 2 3 31 31 H 1.09002 * 109.47067 * 59.99650 * 1 2 3 32 32 H 1.08999 * 109.47355 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47287 * 240.00239 * 2 1 3 34 34 H 1.08993 * 109.47434 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46747 * 300.00542 * 3 2 1 36 36 H 1.09003 * 109.46863 * 59.99378 * 3 2 1 37 37 H 1.09001 * 109.46867 * 209.97016 * 9 8 7 38 38 H 1.08995 * 109.46647 * 329.96689 * 9 8 7 39 39 H 0.96997 * 120.00041 * 0.02562 * 12 10 9 40 40 H 1.09001 * 110.48429 * 214.35674 * 15 13 12 41 41 H 1.08997 * 110.48284 * 336.99951 * 15 13 12 42 42 H 1.09000 * 110.75985 * 279.62889 * 16 15 13 43 43 H 1.09002 * 110.89737 * 156.33648 * 16 15 13 44 44 H 1.09004 * 109.46869 * 49.77978 * 19 17 16 45 45 H 1.08999 * 109.46812 * 169.77213 * 19 17 16 46 46 H 0.97001 * 119.99722 * 359.97438 * 20 19 17 47 47 H 0.97003 * 119.99613 * 179.97438 * 24 23 21 48 48 H 1.09000 * 110.03182 * 0.02562 * 29 13 12 49 49 H 1.09003 * 110.03042 * 121.43746 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7979 -0.3782 2.4765 6 7 2.3996 -1.2283 3.2349 7 7 3.0113 -2.0945 2.5050 8 7 2.8092 -1.8092 1.2632 9 6 3.3269 -2.5436 0.1061 10 6 2.3441 -3.6153 -0.2896 11 8 1.3126 -3.7519 0.3333 12 7 2.6111 -4.4212 -1.3362 13 6 1.6560 -5.4635 -1.7206 14 1 1.1642 -5.8641 -0.8341 15 6 0.6057 -4.8856 -2.6917 16 6 1.1511 -5.2461 -4.0973 17 6 1.7475 -6.6590 -3.8807 18 1 0.9628 -7.4150 -3.9088 19 6 2.8146 -6.9573 -4.9358 20 7 2.1743 -7.1352 -6.2413 21 6 2.9355 -7.4132 -7.3451 22 1 4.0080 -7.5008 -7.2533 23 6 2.3286 -7.5823 -8.5821 24 7 1.0216 -7.4760 -8.6939 25 14 3.3670 -7.9622 -10.0877 26 1 3.5079 -9.4332 -10.2335 27 1 2.7081 -7.4058 -11.2967 28 1 4.7104 -7.3494 -9.9299 29 6 2.3814 -6.5907 -2.4759 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.4689 -1.8553 -0.7272 38 1 4.2809 -3.0029 0.3646 39 1 3.4360 -4.3117 -1.8347 40 1 -0.3646 -5.3540 -2.5269 41 1 0.5332 -3.8043 -2.5757 42 1 1.9254 -4.5426 -4.4033 43 1 0.3457 -5.2751 -4.8312 44 1 3.5179 -6.1260 -4.9863 45 1 3.3481 -7.8686 -4.6655 46 1 1.2110 -7.0569 -6.3237 47 1 0.5976 -7.5938 -9.5583 48 1 3.4442 -6.3626 -2.5562 49 1 2.2410 -7.5387 -1.9565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284218208.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:59 Heat of formation + Delta-G solvation = 49.563580 kcal Electronic energy + Delta-G solvation = -29093.013789 eV Core-core repulsion = 25091.409227 eV Total energy + Delta-G solvation = -4001.604561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.29762 -41.26279 -39.33380 -37.17608 -36.58980 -36.31812 -34.82539 -33.00139 -32.52215 -30.58695 -30.06782 -28.66632 -28.12522 -26.18541 -25.49192 -24.57249 -23.88043 -22.51723 -21.58805 -21.25102 -20.79255 -19.14871 -18.92992 -18.78992 -17.56540 -17.29458 -16.76513 -16.60516 -16.41893 -16.17166 -15.57811 -15.52935 -15.12729 -14.97057 -14.58760 -14.48078 -14.26596 -14.20778 -13.79145 -13.46192 -13.22442 -13.15081 -13.10742 -12.80276 -12.72873 -12.68520 -12.53859 -12.48131 -12.31027 -12.28750 -12.16063 -12.05423 -11.90371 -11.86572 -11.58903 -11.52540 -11.44398 -11.20978 -10.94691 -10.87671 -10.19612 -8.94974 -7.92704 -5.20380 0.09022 0.83886 1.12922 1.31909 1.49225 1.50483 1.58690 2.00985 2.58215 2.87175 3.14836 3.41145 3.41348 3.57586 3.60717 3.64473 3.90934 3.93174 4.00653 4.04818 4.17863 4.19412 4.36973 4.44525 4.52268 4.53438 4.62241 4.64249 4.70551 4.76523 4.79354 4.82602 4.89518 4.93590 4.94222 5.00057 5.09773 5.13950 5.17398 5.27165 5.27596 5.34858 5.41101 5.49492 5.54739 5.59074 6.30145 6.36140 7.03254 7.36505 7.48281 8.15488 8.36353 9.30980 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.002032 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.929055 B =13775.183988 C =14271.065570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.011 4.011 3 C -0.140 4.140 4 C 0.209 3.791 5 N -0.330 5.330 6 N -0.108 5.108 7 N -0.103 5.103 8 N -0.291 5.291 9 C 0.084 3.916 10 C 0.502 3.498 11 O -0.573 6.573 12 N -0.693 5.693 13 C 0.151 3.849 14 H 0.077 0.923 15 C -0.123 4.123 16 C -0.105 4.105 17 C -0.094 4.094 18 H 0.060 0.940 19 C 0.159 3.841 20 N -0.746 5.746 21 C -0.240 4.240 22 H 0.077 0.923 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.971 3.029 26 H -0.290 1.290 27 H -0.298 1.298 28 H -0.267 1.267 29 C -0.109 4.109 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.040 0.960 33 H 0.122 0.878 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.190 0.810 38 H 0.176 0.824 39 H 0.423 0.577 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.031 0.969 45 H 0.016 0.984 46 H 0.373 0.627 47 H 0.250 0.750 48 H 0.095 0.905 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.266 15.652 16.169 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 C -0.198 4.198 4 C -0.069 4.069 5 N -0.179 5.179 6 N -0.102 5.102 7 N -0.089 5.089 8 N -0.092 5.092 9 C -0.040 4.040 10 C 0.286 3.714 11 O -0.452 6.452 12 N -0.346 5.346 13 C 0.046 3.954 14 H 0.095 0.905 15 C -0.162 4.162 16 C -0.143 4.143 17 C -0.113 4.113 18 H 0.079 0.921 19 C 0.033 3.967 20 N -0.389 5.389 21 C -0.372 4.372 22 H 0.095 0.905 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.800 3.200 26 H -0.218 1.218 27 H -0.224 1.224 28 H -0.192 1.192 29 C -0.148 4.148 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.059 0.941 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.207 0.793 38 H 0.194 0.806 39 H 0.261 0.739 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.034 0.966 46 H 0.204 0.796 47 H 0.059 0.941 48 H 0.114 0.886 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.858 15.336 17.975 24.343 hybrid contribution -0.020 -0.735 -1.976 2.108 sum 5.838 14.601 15.999 22.433 Atomic orbital electron populations 1.21818 0.92294 1.01922 1.04038 1.20099 0.97325 0.96990 0.88832 1.21853 1.01690 0.92192 1.04099 1.26746 0.93433 0.88559 0.98190 1.74867 1.20664 1.22490 0.99834 1.78568 1.08162 0.99813 1.23663 1.78768 1.20645 1.20839 0.88613 1.48115 1.34261 1.19980 1.06810 1.22564 0.98967 0.95872 0.86555 1.20737 0.87040 0.83078 0.80526 1.90831 1.28547 1.71427 1.54398 1.45915 1.24300 1.33328 1.31075 1.21481 0.89551 0.87218 0.97163 0.90455 1.22708 0.98258 1.01035 0.94163 1.22421 0.99885 0.95921 0.96073 1.22063 0.97399 0.97550 0.94263 0.92101 1.20887 0.94265 0.97364 0.84157 1.42604 1.06495 1.85648 1.04114 1.19645 0.91553 1.38304 0.87735 0.90493 1.25551 0.96813 1.03975 1.00721 1.69814 1.09485 1.58766 1.24113 0.85175 0.78185 0.77481 0.79146 1.21756 1.22443 1.19152 1.22339 1.00863 0.98182 0.93371 0.92451 0.88322 0.94121 0.86042 0.91547 0.88423 0.92585 0.79322 0.80617 0.73860 0.91519 0.91003 0.90903 0.93626 0.95133 0.96562 0.79559 0.94148 0.88633 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.18 71.98 0.66 -1.17 16 2 C -0.01 -0.11 3.26 -11.54 -0.04 -0.15 16 3 C -0.14 -1.05 9.18 71.98 0.66 -0.39 16 4 C 0.21 3.92 6.64 138.13 0.92 4.84 16 5 N -0.33 -8.66 12.36 -50.45 -0.62 -9.29 16 6 N -0.11 -3.20 13.43 37.01 0.50 -2.70 16 7 N -0.10 -2.60 13.29 37.02 0.49 -2.11 16 8 N -0.29 -5.14 2.83 -341.98 -0.97 -6.11 16 9 C 0.08 0.57 6.57 85.63 0.56 1.13 16 10 C 0.50 7.14 7.89 87.66 0.69 7.83 16 11 O -0.57 -14.83 16.10 -3.02 -0.05 -14.87 16 12 N -0.69 -7.44 5.04 -439.11 -2.21 -9.65 16 13 C 0.15 2.56 3.23 45.72 0.15 2.71 16 14 H 0.08 1.60 7.59 -2.39 -0.02 1.58 16 15 C -0.12 -2.46 6.55 31.72 0.21 -2.26 16 16 C -0.11 -2.61 6.19 31.93 0.20 -2.41 16 17 C -0.09 -2.46 2.89 -9.72 -0.03 -2.48 16 18 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 19 C 0.16 5.48 5.54 86.38 0.48 5.96 16 20 N -0.75 -35.46 5.49 -343.46 -1.89 -37.35 16 21 C -0.24 -12.78 9.99 84.04 0.84 -11.94 16 22 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 23 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 24 N -0.97 -58.01 13.06 21.65 0.28 -57.73 16 25 Si 0.97 44.54 29.55 68.60 2.03 46.57 16 26 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 29 C -0.11 -1.91 6.14 31.32 0.19 -1.72 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.12 0.52 6.85 -2.38 -0.02 0.50 16 34 H 0.07 0.40 8.14 -2.39 -0.02 0.39 16 35 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.19 -0.59 7.13 -2.39 -0.02 -0.61 16 38 H 0.18 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.42 1.62 8.31 -92.71 -0.77 0.85 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.36 8.04 -2.39 -0.02 1.34 16 42 H 0.07 1.72 7.97 -2.39 -0.02 1.70 16 43 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.03 0.99 8.02 -2.38 -0.02 0.97 16 45 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.37 19.16 7.64 -92.71 -0.71 18.45 16 47 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 48 H 0.10 1.30 7.31 -2.39 -0.02 1.28 16 49 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -82.64 403.89 3.01 -79.64 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -0.51 Total: 17.56 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 5.96 Total: -3.96 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -4.42 Total: -124.94 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.05 Total: -14.87 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -82.64 3.01 -79.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284218208.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.201 kcal (2) G-P(sol) polarization free energy of solvation -82.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds