Wall clock time and date at job start Tue Mar 31 2020 19:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47039 * 2 1 4 4 C 1.50703 * 109.47064 * 119.99842 * 2 1 3 5 5 N 1.31067 * 126.66062 * 299.95848 * 4 2 1 6 6 N 1.28841 * 107.99252 * 180.02562 * 5 4 2 7 7 N 1.28738 * 109.39216 * 359.73298 * 6 5 4 8 8 N 1.29012 * 108.81097 * 0.43938 * 7 6 5 9 9 C 1.46505 * 126.43813 * 179.83326 * 8 7 6 10 10 C 1.50701 * 109.47354 * 269.68543 * 9 8 7 11 11 O 1.21283 * 119.99731 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00547 * 180.02562 * 10 9 8 13 13 C 1.46491 * 120.00449 * 180.02562 * 12 10 9 14 14 H 1.09007 * 110.01462 * 326.38679 * 13 12 10 15 15 C 1.54269 * 110.07753 * 87.80548 * 13 12 10 16 16 C 1.55032 * 104.27833 * 142.82513 * 15 13 12 17 17 C 1.54881 * 102.68502 * 322.23515 * 16 15 13 18 18 H 1.09006 * 110.48920 * 279.02910 * 17 16 15 19 19 C 1.53005 * 110.48896 * 156.51815 * 17 16 15 20 20 N 1.46505 * 109.46904 * 68.24079 * 19 17 16 21 21 C 1.36931 * 119.99788 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 19 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00121 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00072 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99871 * 25 23 21 29 29 C 1.53876 * 110.03258 * 205.00214 * 13 12 10 30 30 H 1.09007 * 109.47199 * 300.00319 * 1 2 3 31 31 H 1.09001 * 109.46988 * 59.99872 * 1 2 3 32 32 H 1.08997 * 109.47463 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47274 * 239.99826 * 2 1 3 34 34 H 1.09002 * 109.47087 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47336 * 299.99915 * 3 2 1 36 36 H 1.08999 * 109.47549 * 60.00092 * 3 2 1 37 37 H 1.09002 * 109.47085 * 149.69144 * 9 8 7 38 38 H 1.08997 * 109.47508 * 29.69141 * 9 8 7 39 39 H 0.97005 * 119.99806 * 0.02562 * 12 10 9 40 40 H 1.08995 * 110.48656 * 261.59641 * 15 13 12 41 41 H 1.08999 * 110.48093 * 24.11002 * 15 13 12 42 42 H 1.09004 * 110.87147 * 203.90327 * 16 15 13 43 43 H 1.08994 * 110.69513 * 80.49103 * 16 15 13 44 44 H 1.09003 * 109.46946 * 308.24838 * 19 17 16 45 45 H 1.08993 * 109.47679 * 188.24380 * 19 17 16 46 46 H 0.97000 * 119.99792 * 0.02562 * 20 19 17 47 47 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 48 48 H 1.09001 * 110.03595 * 121.38256 * 29 13 12 49 49 H 1.08998 * 110.07283 * 359.96658 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7982 -0.3779 2.4765 6 7 2.3996 -1.2281 3.2351 7 7 3.0068 -2.0975 2.5052 8 7 2.8090 -1.8091 1.2634 9 6 3.3272 -2.5434 0.1063 10 6 4.6651 -1.9750 -0.2913 11 8 5.1393 -1.0482 0.3309 12 7 5.3346 -2.4965 -1.3383 13 6 6.6354 -1.9443 -1.7244 14 1 6.6562 -0.8710 -1.5350 15 6 7.7623 -2.6421 -0.9351 16 6 8.9249 -2.7620 -1.9537 17 6 8.1860 -3.0789 -3.2775 18 1 7.9342 -4.1382 -3.3298 19 6 9.0421 -2.6734 -4.4791 20 7 10.2134 -3.5495 -4.5619 21 6 11.1296 -3.3745 -5.5644 22 1 10.9891 -2.5905 -6.2937 23 6 12.2424 -4.2010 -5.6396 24 7 12.4140 -5.1561 -4.7505 25 14 13.4964 -3.9574 -7.0026 26 1 14.5423 -3.0060 -6.5487 27 1 14.1242 -5.2611 -7.3364 28 1 12.8193 -3.4114 -8.2063 29 6 6.9047 -2.2220 -3.2138 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 2.6301 -2.4482 -0.7263 38 1 3.4420 -3.5958 0.3654 39 1 4.9552 -3.2375 -1.8361 40 1 8.0631 -2.0345 -0.0817 41 1 7.4413 -3.6300 -0.6048 42 1 9.5969 -3.5761 -1.6820 43 1 9.4684 -1.8203 -2.0305 44 1 9.3688 -1.6403 -4.3603 45 1 8.4539 -2.7658 -5.3920 46 1 10.3398 -4.2535 -3.9067 47 1 13.1915 -5.7338 -4.8032 48 1 7.0564 -1.2835 -3.7471 49 1 6.0682 -2.7681 -3.6498 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284218210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:09 Heat of formation + Delta-G solvation = 76.013245 kcal Electronic energy + Delta-G solvation = -28810.136654 eV Core-core repulsion = 24809.679036 eV Total energy + Delta-G solvation = -4000.457618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.50801 -40.49027 -38.33924 -36.62558 -35.74539 -35.04343 -33.64405 -31.84773 -31.23716 -29.77685 -28.91648 -27.72609 -27.53869 -24.80274 -24.55169 -23.70232 -22.27146 -21.69192 -20.91642 -20.58068 -19.78194 -18.40485 -18.15005 -17.09152 -16.76037 -16.46100 -16.12864 -15.79900 -15.08466 -14.98364 -14.73957 -14.34005 -14.08200 -13.79165 -13.76868 -13.53649 -13.23839 -13.09562 -12.88366 -12.71049 -12.51787 -12.32453 -12.15120 -11.99972 -11.86540 -11.70441 -11.67957 -11.45815 -11.28944 -11.18298 -10.91721 -10.83318 -10.66690 -10.45613 -10.37799 -10.32801 -10.22040 -10.00901 -9.72257 -9.45028 -8.90359 -6.95149 -5.79973 -3.08382 0.84612 1.41573 1.91559 1.98419 2.60777 3.40888 3.42893 3.46021 3.47630 3.66616 3.92095 3.97039 4.18693 4.42817 4.50167 4.54775 4.55802 4.65480 4.69083 4.88177 5.06159 5.11716 5.22221 5.30960 5.35533 5.36431 5.39096 5.40894 5.47308 5.50359 5.55872 5.66031 5.71964 5.72312 5.74984 5.78292 5.92292 5.99487 6.16332 6.20630 6.29625 6.46758 6.51397 6.71830 6.85104 6.92285 7.58486 7.66532 8.32696 8.39175 9.50408 10.08641 10.43049 11.42911 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.029332 B = 0.001820 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.352207 B =15377.761825 C =15876.334973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 C -0.145 4.145 4 C 0.202 3.798 5 N -0.300 5.300 6 N -0.072 5.072 7 N -0.085 5.085 8 N -0.295 5.295 9 C 0.091 3.909 10 C 0.499 3.501 11 O -0.517 6.517 12 N -0.711 5.711 13 C 0.142 3.858 14 H 0.092 0.908 15 C -0.134 4.134 16 C -0.111 4.111 17 C -0.097 4.097 18 H 0.076 0.924 19 C 0.160 3.840 20 N -0.732 5.732 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.122 4.122 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.404 0.596 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.019 0.981 45 H 0.017 0.983 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.078 0.922 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.442 6.837 6.794 28.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.203 4.203 4 C -0.076 4.076 5 N -0.148 5.148 6 N -0.066 5.066 7 N -0.070 5.070 8 N -0.096 5.096 9 C -0.036 4.036 10 C 0.281 3.719 11 O -0.392 6.392 12 N -0.363 5.363 13 C 0.038 3.962 14 H 0.110 0.890 15 C -0.173 4.173 16 C -0.148 4.148 17 C -0.116 4.116 18 H 0.094 0.906 19 C 0.032 3.968 20 N -0.376 5.376 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.160 4.160 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.239 0.761 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.889 7.412 8.540 28.250 hybrid contribution 0.813 -0.730 -1.748 2.062 sum -25.076 6.682 6.791 26.825 Atomic orbital electron populations 1.21859 0.91859 1.02708 1.03817 1.19798 0.97367 0.96618 0.89423 1.21836 1.01987 0.92969 1.03497 1.26105 0.94769 0.88700 0.98038 1.74957 1.20577 1.20937 0.98325 1.78624 1.06809 0.98786 1.22350 1.78909 1.19079 1.21858 0.87155 1.47849 1.33980 1.20903 1.06836 1.22013 0.96196 0.98866 0.86482 1.20283 0.86144 0.84045 0.81437 1.90839 1.68337 1.28036 1.51982 1.46144 1.21497 1.37021 1.31647 1.21836 0.80611 0.98973 0.94780 0.88973 1.22820 0.95440 1.00502 0.98538 1.22489 0.96401 1.02660 0.93298 1.22158 0.93890 0.99423 0.96116 0.90606 1.20693 0.88487 0.93978 0.93627 1.42338 1.23214 1.37882 1.34150 1.19227 1.00462 1.12671 1.04731 0.91246 1.24744 0.98831 0.98415 0.99069 1.69655 1.30132 1.21546 1.36883 0.86192 0.81639 0.76876 0.81492 1.21725 1.21775 1.20788 1.22439 0.98555 1.01395 0.93624 0.90882 0.90683 0.92369 0.89192 0.91863 0.90804 0.91002 0.84303 0.83821 0.76125 0.91439 0.91372 0.90692 0.91083 0.96283 0.96540 0.78267 0.93519 0.90291 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 9.18 37.16 0.34 -0.27 16 2 C -0.01 -0.06 3.26 -91.77 -0.30 -0.36 16 3 C -0.14 -0.91 9.18 37.16 0.34 -0.57 16 4 C 0.20 1.94 6.64 -155.44 -1.03 0.91 16 5 N -0.30 -3.81 12.36 32.70 0.40 -3.41 16 6 N -0.07 -1.04 13.43 60.35 0.81 -0.23 16 7 N -0.08 -1.09 13.29 60.35 0.80 -0.29 16 8 N -0.30 -2.81 2.83 -59.44 -0.17 -2.98 16 9 C 0.09 0.45 6.57 -5.19 -0.03 0.41 16 10 C 0.50 4.14 7.90 -10.99 -0.09 4.05 16 11 O -0.52 -6.98 16.08 5.55 0.09 -6.89 16 12 N -0.71 -4.77 5.04 -52.72 -0.27 -5.03 16 13 C 0.14 1.38 3.25 -66.81 -0.22 1.16 16 14 H 0.09 1.03 7.56 -51.93 -0.39 0.64 16 15 C -0.13 -1.56 6.54 -24.99 -0.16 -1.72 16 16 C -0.11 -1.56 6.11 -24.67 -0.15 -1.71 16 17 C -0.10 -1.34 2.90 -88.96 -0.26 -1.60 16 18 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 19 C 0.16 2.97 5.54 -4.04 -0.02 2.95 16 20 N -0.73 -17.82 5.47 -59.90 -0.33 -18.15 16 21 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 25 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 C -0.12 -1.20 6.14 -25.61 -0.16 -1.36 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.30 6.85 -51.93 -0.36 -0.05 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.14 0.07 7.13 -51.93 -0.37 -0.30 16 38 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.40 1.38 8.32 -40.82 -0.34 1.04 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.75 8.05 -51.93 -0.42 0.34 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 44 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.38 9.81 7.58 -40.82 -0.31 9.50 16 47 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.08 0.80 7.84 -51.93 -0.41 0.39 16 49 H 0.07 0.54 7.62 -51.93 -0.40 0.14 16 LS Contribution 403.82 15.07 6.09 6.09 Total: -1.00 -37.00 403.82 -6.87 -43.87 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.02 Total: 2.37 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -1.99 Total: -5.36 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 1.98 Total: -57.18 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: 0.09 Total: -6.89 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.00 -6.87 -43.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284218210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.885 kcal (2) G-P(sol) polarization free energy of solvation -36.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds