Wall clock time and date at job start Tue Mar 31 2020 19:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47039 * 2 1 4 4 C 1.50703 * 109.47064 * 119.99842 * 2 1 3 5 5 N 1.31067 * 126.66062 * 299.95848 * 4 2 1 6 6 N 1.28841 * 107.99252 * 180.02562 * 5 4 2 7 7 N 1.28738 * 109.39216 * 359.73298 * 6 5 4 8 8 N 1.29012 * 108.81097 * 0.43938 * 7 6 5 9 9 C 1.46505 * 126.43813 * 179.83326 * 8 7 6 10 10 C 1.50701 * 109.47354 * 269.68543 * 9 8 7 11 11 O 1.21283 * 119.99731 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00547 * 180.02562 * 10 9 8 13 13 C 1.46491 * 120.00449 * 180.02562 * 12 10 9 14 14 H 1.09007 * 110.01462 * 326.38679 * 13 12 10 15 15 C 1.54269 * 110.07753 * 87.80548 * 13 12 10 16 16 C 1.55032 * 104.27833 * 142.82513 * 15 13 12 17 17 C 1.54881 * 102.68502 * 322.23515 * 16 15 13 18 18 H 1.09006 * 110.48920 * 279.02910 * 17 16 15 19 19 C 1.53005 * 110.48896 * 156.51815 * 17 16 15 20 20 N 1.46505 * 109.46904 * 68.24079 * 19 17 16 21 21 C 1.36931 * 119.99788 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 19 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00121 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00072 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99871 * 25 23 21 29 29 C 1.53876 * 110.03258 * 205.00214 * 13 12 10 30 30 H 1.09007 * 109.47199 * 300.00319 * 1 2 3 31 31 H 1.09001 * 109.46988 * 59.99872 * 1 2 3 32 32 H 1.08997 * 109.47463 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47274 * 239.99826 * 2 1 3 34 34 H 1.09002 * 109.47087 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47336 * 299.99915 * 3 2 1 36 36 H 1.08999 * 109.47549 * 60.00092 * 3 2 1 37 37 H 1.09002 * 109.47085 * 149.69144 * 9 8 7 38 38 H 1.08997 * 109.47508 * 29.69141 * 9 8 7 39 39 H 0.97005 * 119.99806 * 0.02562 * 12 10 9 40 40 H 1.08995 * 110.48656 * 261.59641 * 15 13 12 41 41 H 1.08999 * 110.48093 * 24.11002 * 15 13 12 42 42 H 1.09004 * 110.87147 * 203.90327 * 16 15 13 43 43 H 1.08994 * 110.69513 * 80.49103 * 16 15 13 44 44 H 1.09003 * 109.46946 * 308.24838 * 19 17 16 45 45 H 1.08993 * 109.47679 * 188.24380 * 19 17 16 46 46 H 0.97000 * 119.99792 * 0.02562 * 20 19 17 47 47 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 48 48 H 1.09001 * 110.03595 * 121.38256 * 29 13 12 49 49 H 1.08998 * 110.07283 * 359.96658 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7982 -0.3779 2.4765 6 7 2.3996 -1.2281 3.2351 7 7 3.0068 -2.0975 2.5052 8 7 2.8090 -1.8091 1.2634 9 6 3.3272 -2.5434 0.1063 10 6 4.6651 -1.9750 -0.2913 11 8 5.1393 -1.0482 0.3309 12 7 5.3346 -2.4965 -1.3383 13 6 6.6354 -1.9443 -1.7244 14 1 6.6562 -0.8710 -1.5350 15 6 7.7623 -2.6421 -0.9351 16 6 8.9249 -2.7620 -1.9537 17 6 8.1860 -3.0789 -3.2775 18 1 7.9342 -4.1382 -3.3298 19 6 9.0421 -2.6734 -4.4791 20 7 10.2134 -3.5495 -4.5619 21 6 11.1296 -3.3745 -5.5644 22 1 10.9891 -2.5905 -6.2937 23 6 12.2424 -4.2010 -5.6396 24 7 12.4140 -5.1561 -4.7505 25 14 13.4964 -3.9574 -7.0026 26 1 14.5423 -3.0060 -6.5487 27 1 14.1242 -5.2611 -7.3364 28 1 12.8193 -3.4114 -8.2063 29 6 6.9047 -2.2220 -3.2138 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 2.6301 -2.4482 -0.7263 38 1 3.4420 -3.5958 0.3654 39 1 4.9552 -3.2375 -1.8361 40 1 8.0631 -2.0345 -0.0817 41 1 7.4413 -3.6300 -0.6048 42 1 9.5969 -3.5761 -1.6820 43 1 9.4684 -1.8203 -2.0305 44 1 9.3688 -1.6403 -4.3603 45 1 8.4539 -2.7658 -5.3920 46 1 10.3398 -4.2535 -3.9067 47 1 13.1915 -5.7338 -4.8032 48 1 7.0564 -1.2835 -3.7471 49 1 6.0682 -2.7681 -3.6498 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284218210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:08 Heat of formation + Delta-G solvation = 48.712772 kcal Electronic energy + Delta-G solvation = -28811.320491 eV Core-core repulsion = 24809.679036 eV Total energy + Delta-G solvation = -4001.641455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.29714 -41.23499 -39.34628 -37.17142 -36.60745 -36.32809 -34.91396 -33.02245 -32.52627 -30.60363 -30.11081 -28.58512 -28.11061 -26.19747 -25.48668 -24.54039 -23.92265 -22.36197 -21.52114 -21.45804 -20.96038 -19.14340 -19.02485 -18.78736 -17.56420 -17.17096 -16.78133 -16.70398 -16.43045 -15.91154 -15.69348 -15.46448 -15.11975 -15.03008 -14.55122 -14.51638 -14.35710 -14.19502 -13.79158 -13.53627 -13.27942 -13.12517 -13.09537 -12.91854 -12.80541 -12.68817 -12.50649 -12.42088 -12.29748 -12.27876 -12.16824 -12.08326 -11.89245 -11.79400 -11.63626 -11.53415 -11.47492 -11.21790 -10.95079 -10.90159 -10.20282 -8.96780 -7.94570 -5.22189 0.09450 0.84889 1.13256 1.31637 1.47448 1.48927 1.57200 2.00301 2.56605 2.88232 3.15560 3.38904 3.39905 3.55574 3.62767 3.64336 3.89230 3.91892 4.01957 4.05853 4.18150 4.20094 4.37646 4.41520 4.49459 4.52488 4.59710 4.64833 4.69278 4.77722 4.77812 4.83940 4.86742 4.91146 4.95145 5.04397 5.09288 5.14567 5.15334 5.22271 5.28709 5.36693 5.37699 5.47796 5.51805 5.58465 6.28484 6.36628 7.04712 7.34850 7.48534 8.13488 8.35126 9.28966 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.029332 B = 0.001820 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.352207 B =15377.761825 C =15876.334973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.010 4.010 3 C -0.143 4.143 4 C 0.208 3.792 5 N -0.331 5.331 6 N -0.109 5.109 7 N -0.105 5.105 8 N -0.291 5.291 9 C 0.085 3.915 10 C 0.500 3.500 11 O -0.575 6.575 12 N -0.692 5.692 13 C 0.152 3.848 14 H 0.079 0.921 15 C -0.126 4.126 16 C -0.111 4.111 17 C -0.088 4.088 18 H 0.077 0.923 19 C 0.156 3.844 20 N -0.745 5.745 21 C -0.243 4.243 22 H 0.075 0.925 23 C -0.078 4.078 24 N -0.969 5.969 25 Si 0.971 3.029 26 H -0.290 1.290 27 H -0.296 1.296 28 H -0.268 1.268 29 C -0.107 4.107 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.039 0.961 35 H 0.101 0.899 36 H 0.054 0.946 37 H 0.195 0.805 38 H 0.174 0.826 39 H 0.425 0.575 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.016 0.984 45 H 0.025 0.975 46 H 0.374 0.626 47 H 0.250 0.750 48 H 0.081 0.919 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.942 6.659 4.259 30.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 C -0.201 4.201 4 C -0.070 4.070 5 N -0.180 5.180 6 N -0.103 5.103 7 N -0.091 5.091 8 N -0.092 5.092 9 C -0.038 4.038 10 C 0.285 3.715 11 O -0.454 6.454 12 N -0.346 5.346 13 C 0.048 3.952 14 H 0.097 0.903 15 C -0.165 4.165 16 C -0.150 4.150 17 C -0.107 4.107 18 H 0.095 0.905 19 C 0.030 3.970 20 N -0.388 5.388 21 C -0.375 4.375 22 H 0.093 0.907 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.801 3.199 26 H -0.217 1.217 27 H -0.222 1.222 28 H -0.193 1.193 29 C -0.145 4.145 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.058 0.942 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.212 0.788 38 H 0.191 0.809 39 H 0.264 0.736 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.034 0.966 45 H 0.043 0.957 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.100 0.900 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -28.438 7.227 5.962 29.941 hybrid contribution 1.596 -0.624 -1.001 1.985 sum -26.842 6.603 4.961 28.083 Atomic orbital electron populations 1.21857 0.90495 1.03369 1.04107 1.20123 0.98348 0.95891 0.88766 1.21826 1.00403 0.93813 1.04071 1.26819 0.93614 0.88283 0.98269 1.74858 1.21629 1.21564 0.99934 1.78576 1.08184 0.99831 1.23720 1.78784 1.19386 1.22183 0.88742 1.48128 1.33324 1.20983 1.06780 1.22576 0.95209 0.99437 0.86626 1.20807 0.86986 0.83049 0.80672 1.90841 1.69933 1.30747 1.53843 1.45882 1.20109 1.37190 1.31388 1.21479 0.81364 0.98110 0.94293 0.90302 1.22715 0.95212 1.01007 0.97520 1.22403 0.96968 1.00809 0.94782 1.22041 0.94939 1.00259 0.93481 0.90462 1.20909 0.87351 0.92731 0.96052 1.42579 1.24508 1.38454 1.33220 1.19648 1.00823 1.12012 1.05014 0.90701 1.25555 1.01073 0.98746 1.01645 1.69809 1.30667 1.22723 1.38850 0.85165 0.79134 0.76370 0.79258 1.21727 1.22237 1.19271 1.22321 0.97333 1.01093 0.93753 0.92816 0.88180 0.91532 0.85657 0.94215 0.88025 0.92683 0.78769 0.80863 0.73568 0.92931 0.90424 0.93171 0.92714 0.96642 0.95732 0.79428 0.94100 0.90023 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.18 71.98 0.66 -0.11 16 2 C -0.01 -0.08 3.26 -11.54 -0.04 -0.12 16 3 C -0.14 -1.58 9.18 71.98 0.66 -0.92 16 4 C 0.21 3.71 6.64 138.14 0.92 4.63 16 5 N -0.33 -8.58 12.36 -50.45 -0.62 -9.20 16 6 N -0.11 -3.25 13.43 37.01 0.50 -2.75 16 7 N -0.10 -2.68 13.29 37.02 0.49 -2.19 16 8 N -0.29 -4.99 2.83 -341.97 -0.97 -5.96 16 9 C 0.09 0.49 6.57 85.63 0.56 1.05 16 10 C 0.50 6.82 7.90 87.66 0.69 7.51 16 11 O -0.57 -14.97 16.08 -3.04 -0.05 -15.02 16 12 N -0.69 -6.62 5.04 -439.11 -2.21 -8.83 16 13 C 0.15 2.60 3.25 45.72 0.15 2.75 16 14 H 0.08 1.65 7.56 -2.38 -0.02 1.63 16 15 C -0.13 -2.82 6.54 31.72 0.21 -2.61 16 16 C -0.11 -3.18 6.11 31.93 0.20 -2.98 16 17 C -0.09 -2.32 2.90 -9.72 -0.03 -2.35 16 18 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 19 C 0.16 5.65 5.54 86.38 0.48 6.12 16 20 N -0.75 -36.43 5.47 -343.44 -1.88 -38.31 16 21 C -0.24 -13.31 9.99 84.04 0.84 -12.47 16 22 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 23 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 24 N -0.97 -58.73 13.06 21.65 0.28 -58.44 16 25 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 29 C -0.11 -1.75 6.14 31.32 0.19 -1.56 16 30 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.13 0.18 6.85 -2.39 -0.02 0.16 16 34 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.20 -1.08 7.13 -2.39 -0.02 -1.10 16 38 H 0.17 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.42 0.58 8.32 -92.70 -0.77 -0.19 16 40 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.59 8.05 -2.39 -0.02 1.57 16 42 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.05 1.71 8.00 -2.39 -0.02 1.69 16 44 H 0.02 0.58 8.06 -2.39 -0.02 0.56 16 45 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.37 19.50 7.58 -92.71 -0.70 18.80 16 47 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 48 H 0.08 1.38 7.84 -2.39 -0.02 1.36 16 49 H 0.10 1.05 7.62 -2.39 -0.02 1.03 16 Total: -1.00 -86.29 403.82 3.02 -83.28 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -0.51 Total: 14.86 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 5.96 Total: -5.03 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -4.41 Total: -125.69 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.05 Total: -15.02 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -86.29 3.02 -83.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284218210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.989 kcal (2) G-P(sol) polarization free energy of solvation -86.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds