Wall clock time and date at job start Tue Mar 31 2020 19:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47413 * 2 1 4 4 C 1.50701 * 109.47098 * 120.00101 * 2 1 3 5 5 N 1.31070 * 126.65622 * 299.95705 * 4 2 1 6 6 N 1.28845 * 107.99128 * 180.02562 * 5 4 2 7 7 N 1.28739 * 109.39270 * 359.73541 * 6 5 4 8 8 N 1.29014 * 108.81037 * 0.43637 * 7 6 5 9 9 C 1.46502 * 126.44011 * 179.83720 * 8 7 6 10 10 C 1.50697 * 109.47176 * 269.68873 * 9 8 7 11 11 O 1.21287 * 120.00013 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00462 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00372 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.43348 * 32.46088 * 13 12 10 15 15 C 1.54888 * 110.48478 * 269.77867 * 13 12 10 16 16 C 1.54888 * 102.74928 * 203.37942 * 15 13 12 17 17 C 1.54259 * 104.19544 * 37.94077 * 16 15 13 18 18 H 1.09008 * 110.07356 * 95.69737 * 17 16 15 19 19 C 1.53004 * 110.03578 * 217.10740 * 17 16 15 20 20 N 1.46504 * 109.46932 * 292.17092 * 19 17 16 21 21 C 1.36934 * 119.99567 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00537 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99798 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00134 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00229 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47228 * 179.97438 * 25 23 21 27 27 H 1.48501 * 109.46793 * 299.99987 * 25 23 21 28 28 H 1.48500 * 109.47000 * 60.00079 * 25 23 21 29 29 C 1.53874 * 106.59928 * 336.39367 * 17 16 15 30 30 H 1.08996 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47284 * 300.00540 * 1 2 3 32 32 H 1.09009 * 109.46667 * 60.00260 * 1 2 3 33 33 H 1.09006 * 109.47161 * 239.99836 * 2 1 3 34 34 H 1.08999 * 109.47192 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46743 * 300.00017 * 3 2 1 36 36 H 1.08996 * 109.46947 * 59.99276 * 3 2 1 37 37 H 1.09002 * 109.47399 * 149.69011 * 9 8 7 38 38 H 1.09006 * 109.47110 * 29.68484 * 9 8 7 39 39 H 0.97000 * 119.99984 * 0.02562 * 12 10 9 40 40 H 1.08998 * 110.75755 * 321.69589 * 15 13 12 41 41 H 1.09005 * 110.75983 * 84.87918 * 15 13 12 42 42 H 1.09003 * 110.48415 * 279.26482 * 16 15 13 43 43 H 1.08999 * 110.48837 * 156.62306 * 16 15 13 44 44 H 1.08998 * 109.47524 * 172.16737 * 19 17 16 45 45 H 1.08997 * 109.47093 * 52.16637 * 19 17 16 46 46 H 0.97000 * 119.99825 * 359.97438 * 20 19 17 47 47 H 0.97005 * 119.99717 * 0.02562 * 24 23 21 48 48 H 1.09005 * 110.03346 * 119.28655 * 29 17 16 49 49 H 1.09002 * 110.03359 * 240.71039 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7982 -0.3779 2.4765 6 7 2.3996 -1.2281 3.2351 7 7 3.0068 -2.0976 2.5052 8 7 2.8090 -1.8092 1.2633 9 6 3.3271 -2.5434 0.1063 10 6 4.6650 -1.9751 -0.2913 11 8 5.1393 -1.0483 0.3310 12 7 5.3351 -2.4973 -1.3376 13 6 6.6360 -1.9451 -1.7237 14 1 7.1709 -1.5820 -0.8462 15 6 6.4563 -0.8091 -2.7611 16 6 7.8290 -0.7806 -3.4780 17 6 8.2326 -2.2659 -3.5815 18 1 7.9471 -2.6642 -4.5552 19 6 9.7416 -2.4145 -3.3769 20 7 10.4497 -1.8085 -4.5072 21 6 11.8185 -1.8205 -4.5435 22 1 12.3761 -2.2763 -3.7387 23 6 12.4894 -1.2467 -5.6147 24 7 11.8099 -0.6916 -6.5958 25 14 14.3567 -1.2624 -5.6639 26 1 14.8249 -0.5921 -6.9035 27 1 14.8891 -0.5418 -4.4796 28 1 14.8406 -2.6663 -5.6480 29 6 7.4740 -3.0063 -2.4662 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9563 0.8899 37 1 2.6301 -2.4483 -0.7263 38 1 3.4421 -3.5959 0.3656 39 1 4.9560 -3.2387 -1.8350 40 1 5.6586 -1.0501 -3.4636 41 1 6.2573 0.1403 -2.2639 42 1 8.5576 -0.2278 -2.8850 43 1 7.7318 -0.3416 -4.4709 44 1 9.9972 -3.4722 -3.3129 45 1 10.0342 -1.9136 -2.4541 46 1 9.9488 -1.3988 -5.2299 47 1 10.8402 -0.6832 -6.5701 48 1 6.8197 -3.7634 -2.8986 49 1 8.1808 -3.4715 -1.7791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284218211.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:13 Heat of formation + Delta-G solvation = 75.948864 kcal Electronic energy + Delta-G solvation = -28949.062316 eV Core-core repulsion = 24948.601907 eV Total energy + Delta-G solvation = -4000.460410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.52690 -40.51444 -38.45293 -36.63474 -35.78142 -35.20972 -33.88016 -31.86889 -31.23036 -29.78911 -28.89244 -27.72271 -27.45459 -24.81211 -24.32676 -23.68331 -22.48436 -21.74270 -20.94163 -20.83824 -19.70640 -18.42717 -18.18894 -17.25565 -16.79753 -16.54271 -16.18972 -15.80734 -15.34886 -15.05102 -14.75837 -14.20454 -13.96661 -13.81308 -13.76945 -13.64120 -13.43024 -13.28464 -13.17766 -12.70680 -12.52452 -12.38746 -12.16888 -12.00859 -11.86391 -11.71915 -11.69356 -11.60249 -11.30208 -11.12994 -10.90466 -10.79581 -10.59294 -10.50488 -10.45627 -10.27461 -10.24770 -9.99240 -9.49564 -9.18109 -8.90018 -7.02467 -6.12800 -3.12167 0.82205 1.39006 1.87700 1.96726 2.55427 3.41668 3.50292 3.53779 3.63773 3.71163 3.87765 3.94179 4.14496 4.42615 4.44935 4.53275 4.54375 4.67290 4.68545 4.81990 5.04723 5.12013 5.21703 5.26879 5.31118 5.33614 5.35211 5.36184 5.38749 5.40358 5.58397 5.64770 5.65484 5.67009 5.70935 5.79264 5.84397 5.93351 5.99756 6.06831 6.20302 6.33505 6.44217 6.64909 6.76822 6.87060 7.54304 7.78648 8.30718 8.73825 9.21141 10.07491 10.22452 11.35864 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.001891 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.002766 B =14802.163107 C =15188.264325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 C -0.145 4.145 4 C 0.203 3.797 5 N -0.299 5.299 6 N -0.071 5.071 7 N -0.086 5.086 8 N -0.296 5.296 9 C 0.091 3.909 10 C 0.499 3.501 11 O -0.515 6.515 12 N -0.711 5.711 13 C 0.139 3.861 14 H 0.098 0.902 15 C -0.132 4.132 16 C -0.112 4.112 17 C -0.097 4.097 18 H 0.074 0.926 19 C 0.164 3.836 20 N -0.743 5.743 21 C -0.331 4.331 22 H 0.064 0.936 23 C -0.046 4.046 24 N -0.944 5.944 25 Si 1.080 2.920 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.295 1.295 29 C -0.120 4.120 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.403 0.597 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.018 0.982 45 H 0.021 0.979 46 H 0.367 0.633 47 H 0.254 0.746 48 H 0.068 0.932 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.272 -4.207 9.298 28.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.203 4.203 4 C -0.075 4.075 5 N -0.147 5.147 6 N -0.065 5.065 7 N -0.071 5.071 8 N -0.097 5.097 9 C -0.035 4.035 10 C 0.281 3.719 11 O -0.389 6.389 12 N -0.363 5.363 13 C 0.036 3.964 14 H 0.116 0.884 15 C -0.171 4.171 16 C -0.150 4.150 17 C -0.116 4.116 18 H 0.092 0.908 19 C 0.037 3.963 20 N -0.389 5.389 21 C -0.462 4.462 22 H 0.082 0.918 23 C -0.244 4.244 24 N -0.590 5.590 25 Si 0.911 3.089 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.223 1.223 29 C -0.159 4.159 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.238 0.762 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.200 0.800 47 H 0.065 0.935 48 H 0.087 0.913 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.317 -3.355 10.509 26.702 hybrid contribution -1.472 -0.961 -0.508 1.830 sum -25.789 -4.316 10.002 27.995 Atomic orbital electron populations 1.21859 0.91843 1.02677 1.03854 1.19806 0.97372 0.96659 0.89382 1.21840 1.02033 0.92918 1.03534 1.26117 0.94689 0.88641 0.98054 1.74966 1.20570 1.20883 0.98318 1.78624 1.06773 0.98766 1.22343 1.78899 1.19142 1.21915 0.87146 1.47844 1.34042 1.20950 1.06819 1.21996 0.96144 0.98805 0.86536 1.20292 0.86295 0.84105 0.81219 1.90853 1.67930 1.27759 1.52398 1.46001 1.21582 1.37036 1.31657 1.22069 0.81845 0.94223 0.98311 0.88394 1.22882 0.98578 0.98251 0.97364 1.22324 0.95260 0.96474 1.00909 1.21907 0.96569 0.95152 0.97994 0.90755 1.20732 0.88222 0.95881 0.91508 1.42349 1.03885 1.70115 1.22514 1.20034 0.83011 1.35871 1.07312 0.91838 1.25782 1.06759 0.98391 0.93436 1.70896 1.07610 1.47193 1.33295 0.83242 0.74195 0.75782 0.75718 1.21014 1.22250 1.22284 1.22403 0.98480 0.97104 0.97899 0.92395 0.90857 0.90666 0.89220 0.91830 0.90771 0.90980 0.84294 0.83852 0.76229 0.91365 0.91375 0.90783 0.91244 0.96433 0.96164 0.80017 0.93491 0.91307 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 9.18 37.16 0.34 -0.29 16 2 C -0.01 -0.06 3.26 -91.77 -0.30 -0.36 16 3 C -0.14 -0.97 9.18 37.16 0.34 -0.63 16 4 C 0.20 1.97 6.64 -155.43 -1.03 0.94 16 5 N -0.30 -3.83 12.36 32.70 0.40 -3.43 16 6 N -0.07 -1.03 13.43 60.35 0.81 -0.21 16 7 N -0.09 -1.10 13.29 60.35 0.80 -0.29 16 8 N -0.30 -2.81 2.83 -59.44 -0.17 -2.97 16 9 C 0.09 0.44 6.57 -5.19 -0.03 0.40 16 10 C 0.50 4.12 7.90 -10.99 -0.09 4.04 16 11 O -0.52 -7.07 16.08 5.55 0.09 -6.98 16 12 N -0.71 -4.64 5.16 -52.20 -0.27 -4.91 16 13 C 0.14 1.38 3.22 -66.27 -0.21 1.17 16 14 H 0.10 1.23 7.55 -51.93 -0.39 0.83 16 15 C -0.13 -1.41 6.58 -24.74 -0.16 -1.57 16 16 C -0.11 -1.54 6.08 -25.08 -0.15 -1.70 16 17 C -0.10 -1.37 2.96 -89.50 -0.26 -1.64 16 18 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 19 C 0.16 3.17 5.32 -4.04 -0.02 3.15 16 20 N -0.74 -18.36 5.45 -59.91 -0.33 -18.69 16 21 C -0.33 -9.35 9.99 -15.06 -0.15 -9.50 16 22 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 23 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 24 N -0.94 -29.02 13.70 55.49 0.76 -28.26 16 25 Si 1.08 25.90 29.92 -169.99 -5.09 20.81 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 27 H -0.30 -6.79 7.11 56.52 0.40 -6.38 16 28 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 29 C -0.12 -1.24 6.19 -25.62 -0.16 -1.40 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.20 8.14 -51.92 -0.42 -0.22 16 33 H 0.09 0.32 6.85 -51.93 -0.36 -0.03 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.14 0.06 7.13 -51.93 -0.37 -0.31 16 38 H 0.14 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.40 1.16 8.37 -40.82 -0.34 0.82 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.18 7.76 -51.93 -0.40 0.78 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 46 H 0.37 9.18 6.38 -40.82 -0.26 8.92 16 47 H 0.25 7.63 6.77 -40.82 -0.28 7.36 16 48 H 0.07 0.54 7.73 -51.93 -0.40 0.14 16 49 H 0.08 0.83 7.67 -51.93 -0.40 0.43 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -38.53 401.84 -6.81 -45.34 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.89 Total: 2.38 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -1.99 Total: -8.84 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 2.01 Total: -58.77 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: 0.09 Total: -6.98 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.09 Total: 20.81 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.53 -6.81 -45.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284218211.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.289 kcal (2) G-P(sol) polarization free energy of solvation -38.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds