Wall clock time and date at job start Tue Mar 31 2020 19:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47413 * 2 1 4 4 C 1.50701 * 109.47098 * 120.00101 * 2 1 3 5 5 N 1.31070 * 126.65622 * 299.95705 * 4 2 1 6 6 N 1.28845 * 107.99128 * 180.02562 * 5 4 2 7 7 N 1.28739 * 109.39270 * 359.73541 * 6 5 4 8 8 N 1.29014 * 108.81037 * 0.43637 * 7 6 5 9 9 C 1.46502 * 126.44011 * 179.83720 * 8 7 6 10 10 C 1.50697 * 109.47176 * 269.68873 * 9 8 7 11 11 O 1.21287 * 120.00013 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00462 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00372 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.43348 * 32.46088 * 13 12 10 15 15 C 1.54888 * 110.48478 * 269.77867 * 13 12 10 16 16 C 1.54888 * 102.74928 * 203.37942 * 15 13 12 17 17 C 1.54259 * 104.19544 * 37.94077 * 16 15 13 18 18 H 1.09008 * 110.07356 * 95.69737 * 17 16 15 19 19 C 1.53004 * 110.03578 * 217.10740 * 17 16 15 20 20 N 1.46504 * 109.46932 * 292.17092 * 19 17 16 21 21 C 1.36934 * 119.99567 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00537 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99798 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00134 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00229 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47228 * 179.97438 * 25 23 21 27 27 H 1.48501 * 109.46793 * 299.99987 * 25 23 21 28 28 H 1.48500 * 109.47000 * 60.00079 * 25 23 21 29 29 C 1.53874 * 106.59928 * 336.39367 * 17 16 15 30 30 H 1.08996 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47284 * 300.00540 * 1 2 3 32 32 H 1.09009 * 109.46667 * 60.00260 * 1 2 3 33 33 H 1.09006 * 109.47161 * 239.99836 * 2 1 3 34 34 H 1.08999 * 109.47192 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46743 * 300.00017 * 3 2 1 36 36 H 1.08996 * 109.46947 * 59.99276 * 3 2 1 37 37 H 1.09002 * 109.47399 * 149.69011 * 9 8 7 38 38 H 1.09006 * 109.47110 * 29.68484 * 9 8 7 39 39 H 0.97000 * 119.99984 * 0.02562 * 12 10 9 40 40 H 1.08998 * 110.75755 * 321.69589 * 15 13 12 41 41 H 1.09005 * 110.75983 * 84.87918 * 15 13 12 42 42 H 1.09003 * 110.48415 * 279.26482 * 16 15 13 43 43 H 1.08999 * 110.48837 * 156.62306 * 16 15 13 44 44 H 1.08998 * 109.47524 * 172.16737 * 19 17 16 45 45 H 1.08997 * 109.47093 * 52.16637 * 19 17 16 46 46 H 0.97000 * 119.99825 * 359.97438 * 20 19 17 47 47 H 0.97005 * 119.99717 * 0.02562 * 24 23 21 48 48 H 1.09005 * 110.03346 * 119.28655 * 29 17 16 49 49 H 1.09002 * 110.03359 * 240.71039 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7982 -0.3779 2.4765 6 7 2.3996 -1.2281 3.2351 7 7 3.0068 -2.0976 2.5052 8 7 2.8090 -1.8092 1.2633 9 6 3.3271 -2.5434 0.1063 10 6 4.6650 -1.9751 -0.2913 11 8 5.1393 -1.0483 0.3310 12 7 5.3351 -2.4973 -1.3376 13 6 6.6360 -1.9451 -1.7237 14 1 7.1709 -1.5820 -0.8462 15 6 6.4563 -0.8091 -2.7611 16 6 7.8290 -0.7806 -3.4780 17 6 8.2326 -2.2659 -3.5815 18 1 7.9471 -2.6642 -4.5552 19 6 9.7416 -2.4145 -3.3769 20 7 10.4497 -1.8085 -4.5072 21 6 11.8185 -1.8205 -4.5435 22 1 12.3761 -2.2763 -3.7387 23 6 12.4894 -1.2467 -5.6147 24 7 11.8099 -0.6916 -6.5958 25 14 14.3567 -1.2624 -5.6639 26 1 14.8249 -0.5921 -6.9035 27 1 14.8891 -0.5418 -4.4796 28 1 14.8406 -2.6663 -5.6480 29 6 7.4740 -3.0063 -2.4662 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9563 0.8899 37 1 2.6301 -2.4483 -0.7263 38 1 3.4421 -3.5959 0.3656 39 1 4.9560 -3.2387 -1.8350 40 1 5.6586 -1.0501 -3.4636 41 1 6.2573 0.1403 -2.2639 42 1 8.5576 -0.2278 -2.8850 43 1 7.7318 -0.3416 -4.4709 44 1 9.9972 -3.4722 -3.3129 45 1 10.0342 -1.9136 -2.4541 46 1 9.9488 -1.3988 -5.2299 47 1 10.8402 -0.6832 -6.5701 48 1 6.8197 -3.7634 -2.8986 49 1 8.1808 -3.4715 -1.7791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284218211.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:12 Heat of formation + Delta-G solvation = 47.064767 kcal Electronic energy + Delta-G solvation = -28950.314825 eV Core-core repulsion = 24948.601907 eV Total energy + Delta-G solvation = -4001.712918 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.31669 -41.26258 -39.48457 -37.20637 -36.83588 -36.41187 -35.11474 -32.99939 -32.54021 -30.58657 -30.09465 -28.53884 -28.13562 -26.02638 -25.51098 -24.57798 -24.21247 -22.43608 -21.66924 -21.55326 -20.88679 -19.39255 -19.04505 -18.83975 -17.61839 -17.26906 -16.96439 -16.83799 -16.41270 -15.87407 -15.68553 -15.53615 -15.34493 -15.04353 -14.91087 -14.55959 -14.34506 -14.21826 -13.82074 -13.68830 -13.23949 -13.12709 -13.10733 -12.84331 -12.70135 -12.63180 -12.55502 -12.51418 -12.32237 -12.30098 -12.11862 -11.91660 -11.88495 -11.84523 -11.79052 -11.51370 -11.28738 -11.19008 -10.98297 -10.92935 -10.22919 -9.11887 -8.42151 -5.35329 0.06827 0.82765 1.11295 1.28112 1.56896 1.66554 1.83224 1.94502 2.69446 2.85857 3.13219 3.33787 3.36911 3.49085 3.56182 3.61485 3.79330 3.89336 3.96118 3.99424 4.03482 4.17510 4.30119 4.35575 4.40125 4.43768 4.53307 4.56845 4.62623 4.64979 4.75168 4.81034 4.82804 4.89081 4.92676 4.94716 4.99082 5.05446 5.13023 5.13657 5.25872 5.31040 5.34808 5.42426 5.45078 5.56606 6.32973 6.48677 7.02187 7.08798 7.46444 7.99820 8.09894 9.10178 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.001891 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.002766 B =14802.163107 C =15188.264325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.010 4.010 3 C -0.144 4.144 4 C 0.208 3.792 5 N -0.331 5.331 6 N -0.109 5.109 7 N -0.104 5.104 8 N -0.292 5.292 9 C 0.087 3.913 10 C 0.500 3.500 11 O -0.577 6.577 12 N -0.689 5.689 13 C 0.148 3.852 14 H 0.066 0.934 15 C -0.118 4.118 16 C -0.113 4.113 17 C -0.088 4.088 18 H 0.079 0.921 19 C 0.160 3.840 20 N -0.755 5.755 21 C -0.337 4.337 22 H 0.062 0.938 23 C -0.104 4.104 24 N -0.973 5.973 25 Si 1.127 2.873 26 H -0.291 1.291 27 H -0.281 1.281 28 H -0.276 1.276 29 C -0.108 4.108 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.037 0.963 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.195 0.805 38 H 0.178 0.822 39 H 0.427 0.573 40 H 0.097 0.903 41 H 0.056 0.944 42 H 0.041 0.959 43 H 0.060 0.940 44 H 0.019 0.981 45 H 0.008 0.992 46 H 0.362 0.638 47 H 0.245 0.755 48 H 0.109 0.891 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.228 -6.216 7.890 29.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.070 4.070 5 N -0.180 5.180 6 N -0.103 5.103 7 N -0.090 5.090 8 N -0.093 5.093 9 C -0.037 4.037 10 C 0.284 3.716 11 O -0.455 6.455 12 N -0.343 5.343 13 C 0.043 3.957 14 H 0.085 0.915 15 C -0.156 4.156 16 C -0.151 4.151 17 C -0.107 4.107 18 H 0.097 0.903 19 C 0.034 3.966 20 N -0.400 5.400 21 C -0.469 4.469 22 H 0.080 0.920 23 C -0.296 4.296 24 N -0.621 5.621 25 Si 0.952 3.048 26 H -0.217 1.217 27 H -0.207 1.207 28 H -0.202 1.202 29 C -0.146 4.146 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.143 0.857 34 H 0.056 0.944 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.212 0.788 38 H 0.195 0.805 39 H 0.266 0.734 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.037 0.963 45 H 0.026 0.974 46 H 0.195 0.805 47 H 0.055 0.945 48 H 0.127 0.873 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.315 -5.437 9.108 28.373 hybrid contribution -0.845 -0.330 -0.085 0.912 sum -27.161 -5.767 9.024 29.196 Atomic orbital electron populations 1.21854 0.90402 1.03440 1.04100 1.20114 0.98415 0.95774 0.88805 1.21828 1.00324 0.93970 1.04064 1.26797 0.93635 0.88302 0.98240 1.74865 1.21648 1.21528 0.99932 1.78575 1.08172 0.99821 1.23709 1.78771 1.19336 1.22177 0.88696 1.48131 1.33332 1.20994 1.06816 1.22576 0.94955 0.99524 0.86641 1.20865 0.87178 0.83079 0.80469 1.90855 1.69623 1.30672 1.54386 1.45687 1.20030 1.37189 1.31354 1.21670 0.83243 0.93987 0.96839 0.91542 1.22765 0.97152 0.98176 0.97523 1.22247 0.96675 0.95969 1.00252 1.21803 0.93161 0.95882 0.99847 0.90267 1.20934 0.91533 0.94963 0.89193 1.42555 1.03186 1.70429 1.23808 1.20389 0.84845 1.34754 1.06911 0.91970 1.27204 1.10708 0.98341 0.93311 1.70999 1.07262 1.49263 1.34583 0.82637 0.69597 0.76806 0.75801 1.21687 1.20697 1.20239 1.22298 0.98585 0.97347 0.96408 0.91380 0.92786 0.88258 0.85698 0.94373 0.88124 0.92621 0.78771 0.80506 0.73355 0.88410 0.92521 0.94017 0.92153 0.96326 0.97375 0.80535 0.94481 0.87302 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.18 71.98 0.66 -0.16 16 2 C -0.01 -0.09 3.26 -11.54 -0.04 -0.13 16 3 C -0.14 -1.76 9.18 71.98 0.66 -1.10 16 4 C 0.21 3.77 6.64 138.14 0.92 4.69 16 5 N -0.33 -8.65 12.36 -50.45 -0.62 -9.27 16 6 N -0.11 -3.23 13.43 37.01 0.50 -2.74 16 7 N -0.10 -2.62 13.29 37.02 0.49 -2.13 16 8 N -0.29 -4.96 2.83 -341.97 -0.97 -5.93 16 9 C 0.09 0.45 6.57 85.63 0.56 1.01 16 10 C 0.50 6.82 7.90 87.66 0.69 7.51 16 11 O -0.58 -15.52 16.08 -3.05 -0.05 -15.57 16 12 N -0.69 -6.29 5.16 -437.46 -2.26 -8.55 16 13 C 0.15 2.63 3.22 46.06 0.15 2.78 16 14 H 0.07 1.67 7.55 -2.39 -0.02 1.65 16 15 C -0.12 -2.30 6.58 31.88 0.21 -2.09 16 16 C -0.11 -3.13 6.08 31.67 0.19 -2.94 16 17 C -0.09 -2.38 2.96 -10.07 -0.03 -2.41 16 18 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 19 C 0.16 6.22 5.32 86.38 0.46 6.67 16 20 N -0.76 -37.94 5.45 -343.44 -1.87 -39.81 16 21 C -0.34 -19.24 9.99 84.03 0.84 -18.40 16 22 H 0.06 3.49 7.83 -2.91 -0.02 3.46 16 23 C -0.10 -6.09 5.50 84.86 0.47 -5.63 16 24 N -0.97 -60.68 13.70 21.65 0.30 -60.39 16 25 Si 1.13 52.13 29.92 68.60 2.05 54.18 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 28 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 29 C -0.11 -1.92 6.19 31.32 0.19 -1.72 16 30 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.13 8.14 -2.38 -0.02 0.12 16 33 H 0.13 0.26 6.85 -2.38 -0.02 0.24 16 34 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.20 -1.16 7.13 -2.39 -0.02 -1.18 16 38 H 0.18 -0.18 8.14 -2.38 -0.02 -0.20 16 39 H 0.43 -0.06 8.37 -92.71 -0.78 -0.83 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.04 1.40 7.76 -2.39 -0.02 1.38 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.01 0.34 8.00 -2.39 -0.02 0.32 16 46 H 0.36 18.58 6.38 -92.71 -0.59 17.99 16 47 H 0.24 15.10 6.77 -92.70 -0.63 14.47 16 48 H 0.11 1.12 7.73 -2.38 -0.02 1.11 16 49 H 0.07 1.39 7.67 -2.39 -0.02 1.37 16 Total: -1.00 -90.96 401.84 3.25 -87.71 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -0.26 Total: 14.39 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 5.94 Total: -11.90 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -4.43 Total: -128.82 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.05 Total: -15.57 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 2.05 Total: 54.18 kcal Total: -90.96 3.25 -87.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284218211.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.776 kcal (2) G-P(sol) polarization free energy of solvation -90.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds