Wall clock time and date at job start Tue Mar 31 2020 21:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.49658 * 2 1 4 4 C 1.53038 * 109.49545 * 239.90687 * 2 1 3 5 5 C 1.53042 * 109.53996 * 301.41350 * 4 2 1 6 6 C 1.53626 * 109.23701 * 298.51113 * 5 4 2 7 7 N 1.46925 * 108.54446 * 54.86049 * 6 5 4 8 8 C 1.34777 * 120.63332 * 126.36063 * 7 6 5 9 9 O 1.21278 * 119.99807 * 174.36405 * 8 7 6 10 10 C 1.50699 * 119.99888 * 354.36661 * 8 7 6 11 11 C 1.53002 * 109.47036 * 179.97438 * 10 8 7 12 12 N 1.46503 * 109.47122 * 179.97438 * 11 10 8 13 13 C 1.34595 * 126.43476 * 125.00196 * 12 11 10 14 14 N 1.31069 * 106.67785 * 180.02562 * 13 12 11 15 15 N 1.28849 * 107.99089 * 0.02562 * 14 13 12 16 16 N 1.28738 * 109.39289 * 359.73017 * 15 14 13 17 17 C 1.46931 * 118.73524 * 306.08876 * 7 6 5 18 18 H 1.08996 * 109.58966 * 293.92916 * 17 7 6 19 19 C 1.52997 * 109.58310 * 173.64683 * 17 7 6 20 20 C 1.53003 * 109.46822 * 181.87226 * 19 17 7 21 21 N 1.46500 * 109.47281 * 185.10963 * 20 19 17 22 22 C 1.36934 * 120.00586 * 179.97438 * 21 20 19 23 23 H 1.08004 * 119.99622 * 359.97438 * 22 21 20 24 24 C 1.38809 * 120.00512 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99898 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99975 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47181 * 89.99760 * 26 24 22 28 28 H 1.48503 * 109.46993 * 209.99575 * 26 24 22 29 29 H 1.48494 * 109.47147 * 329.99413 * 26 24 22 30 30 H 1.09000 * 109.47349 * 299.93268 * 1 2 3 31 31 H 1.09004 * 109.46790 * 59.93706 * 1 2 3 32 32 H 1.09003 * 109.46847 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46276 * 61.43790 * 4 2 1 34 34 H 1.09000 * 109.45856 * 181.39327 * 4 2 1 35 35 H 1.08991 * 109.49876 * 58.58888 * 5 4 2 36 36 H 1.08997 * 109.49641 * 178.68980 * 5 4 2 37 37 H 1.08994 * 109.74221 * 295.11680 * 6 5 4 38 38 H 1.09004 * 109.65764 * 174.54602 * 6 5 4 39 39 H 1.08999 * 109.47215 * 59.99986 * 10 8 7 40 40 H 1.09000 * 109.47209 * 299.99792 * 10 8 7 41 41 H 1.08999 * 109.46642 * 60.00233 * 11 10 8 42 42 H 1.09000 * 109.47439 * 300.00248 * 11 10 8 43 43 H 1.08002 * 126.66240 * 359.96993 * 13 12 11 44 44 H 1.08997 * 109.47478 * 301.86986 * 19 17 7 45 45 H 1.08996 * 109.47654 * 61.87560 * 19 17 7 46 46 H 1.09003 * 109.47153 * 305.10813 * 20 19 17 47 47 H 1.08995 * 109.47210 * 65.10727 * 20 19 17 48 48 H 0.97006 * 119.99999 * 359.97438 * 21 20 19 49 49 H 0.96999 * 119.99929 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7233 -1.2482 5 6 1.5030 -2.1561 -1.2656 6 6 2.0190 -2.9054 -0.0277 7 7 1.6516 -2.1379 1.1700 8 6 0.9748 -2.7216 2.1789 9 8 0.7665 -2.1081 3.2041 10 6 0.4768 -4.1364 2.0328 11 6 -0.2524 -4.5549 3.3111 12 7 -0.7370 -5.9301 3.1690 13 6 -0.4800 -6.9580 3.9990 14 7 -1.1009 -8.0025 3.5076 15 7 -1.7073 -7.6353 2.4317 16 7 -1.4938 -6.3824 2.2271 17 6 2.0414 -0.7235 1.2497 18 1 3.1274 -0.6460 1.3007 19 6 1.4229 -0.0907 2.4978 20 6 1.7919 1.3932 2.5534 21 7 1.3038 1.9711 3.8080 22 6 1.5191 3.2955 4.0813 23 1 2.0492 3.9140 3.3721 24 6 1.0571 3.8430 5.2703 25 7 0.4115 3.0892 6.1348 26 14 1.3503 5.6499 5.6427 27 1 0.2157 6.4533 5.1207 28 1 1.4582 5.8414 7.1113 29 1 2.6101 6.0913 4.9921 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6988 -0.1963 -2.1388 34 1 3.1305 -0.7447 -1.2351 35 1 0.4133 -2.1358 -1.2537 36 1 1.8481 -2.6633 -2.1665 37 1 3.1033 -3.0022 -0.0814 38 1 1.5635 -3.8947 0.0183 39 1 1.3220 -4.8032 1.8623 40 1 -0.2086 -4.1949 1.1874 41 1 -1.0975 -3.8881 3.4821 42 1 0.4333 -4.4964 4.1564 43 1 0.1219 -6.9283 4.8952 44 1 0.3385 -0.1941 2.4584 45 1 1.8037 -0.5932 3.3869 46 1 2.8754 1.5003 2.5014 47 1 1.3345 1.9131 1.7117 48 1 0.8280 1.4156 4.4452 49 1 0.0883 3.4718 6.9655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316680336.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:49 Heat of formation + Delta-G solvation = 106.665453 kcal Electronic energy + Delta-G solvation = -29956.556729 eV Core-core repulsion = 25957.428290 eV Total energy + Delta-G solvation = -3999.128438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.46812 -41.03017 -38.23996 -36.36703 -35.34297 -33.83792 -32.97605 -32.75811 -31.68307 -30.85330 -28.51586 -26.92220 -26.38933 -24.80556 -24.11571 -23.89472 -22.92672 -22.16542 -20.90048 -20.10912 -18.72281 -18.09860 -17.39597 -17.10868 -16.68226 -16.30224 -16.04504 -15.78151 -15.35489 -14.98053 -14.59071 -14.38557 -14.04678 -13.96122 -13.49716 -13.40543 -13.20949 -13.10881 -12.90005 -12.85744 -12.48817 -12.44386 -11.98652 -11.92717 -11.68960 -11.47639 -11.39778 -11.21296 -11.16686 -11.11587 -10.90231 -10.81051 -10.64762 -10.60222 -10.48103 -10.22594 -9.99866 -9.64168 -8.97781 -8.81249 -8.65929 -6.84225 -5.70599 -2.98621 0.93397 1.59160 1.95619 2.38243 2.75167 3.45643 3.50304 3.52321 3.80767 3.90668 4.09118 4.16476 4.42849 4.44542 4.58921 4.63327 4.67937 4.72924 4.83137 4.93442 5.02084 5.07431 5.11563 5.17196 5.23539 5.40877 5.44371 5.48504 5.57426 5.60514 5.63754 5.67153 5.77547 5.80267 5.91567 5.99516 6.04780 6.17658 6.23648 6.34368 6.38832 6.52180 6.58827 7.00518 7.09852 7.25691 7.73762 7.99828 8.29574 8.48625 9.59313 10.20603 10.55211 11.52326 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011200 B = 0.002849 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.509116 B = 9824.176175 C =11888.792626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 H 0.089 0.911 4 C -0.116 4.116 5 C -0.138 4.138 6 C 0.105 3.895 7 N -0.603 5.603 8 C 0.517 3.483 9 O -0.514 6.514 10 C -0.158 4.158 11 C 0.128 3.872 12 N -0.306 5.306 13 C 0.163 3.837 14 N -0.310 5.310 15 N -0.079 5.079 16 N -0.093 5.093 17 C 0.157 3.843 18 H 0.072 0.928 19 C -0.119 4.119 20 C 0.148 3.852 21 N -0.731 5.731 22 C -0.237 4.237 23 H 0.068 0.932 24 C -0.016 4.016 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.236 0.764 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.011 0.989 47 H 0.016 0.984 48 H 0.385 0.615 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.575 -18.550 -13.716 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 H 0.107 0.893 4 C -0.153 4.153 5 C -0.176 4.176 6 C -0.018 4.018 7 N -0.336 5.336 8 C 0.303 3.697 9 O -0.390 6.390 10 C -0.199 4.199 11 C 0.007 3.993 12 N -0.108 5.108 13 C -0.136 4.136 14 N -0.159 5.159 15 N -0.073 5.073 16 N -0.080 5.080 17 C 0.054 3.946 18 H 0.090 0.910 19 C -0.156 4.156 20 C 0.020 3.980 21 N -0.375 5.375 22 C -0.368 4.368 23 H 0.086 0.914 24 C -0.212 4.212 25 N -0.581 5.581 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.252 0.748 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.029 0.971 47 H 0.034 0.966 48 H 0.219 0.781 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.709 -18.722 -14.106 23.597 hybrid contribution 0.679 1.458 0.950 1.868 sum 3.388 -17.264 -13.156 21.969 Atomic orbital electron populations 1.21888 0.94709 1.01478 1.02324 1.21569 0.96949 1.00095 0.93770 0.89290 1.21570 1.00426 0.95158 0.98167 1.22037 1.01892 0.96489 0.97149 1.21869 1.00420 0.94831 0.84658 1.48089 1.55979 1.11674 1.17890 1.20041 0.78476 0.87433 0.83710 1.90910 1.56370 1.63547 1.28131 1.21985 1.02322 0.96360 0.99226 1.22076 1.01766 0.75315 1.00138 1.48842 1.32300 1.12825 1.16883 1.27805 1.02476 0.83026 1.00297 1.75017 1.10589 1.24559 1.05704 1.78655 1.16885 1.02071 1.09704 1.78870 1.09278 1.07696 1.12108 1.21381 0.98650 0.78160 0.96361 0.91008 1.22300 1.01619 0.95450 0.96253 1.20790 0.95933 0.91251 0.90032 1.42340 1.68082 1.08686 1.18351 1.19231 1.29753 0.86362 1.01458 0.91357 1.24738 1.01327 0.97927 0.97181 1.69675 1.43332 1.34708 1.10429 0.86210 0.77681 0.85256 0.77179 1.21797 1.21806 1.20841 0.91355 0.93077 0.93015 0.91616 0.91856 0.90879 0.90950 0.91072 0.90029 0.88203 0.87140 0.86312 0.85598 0.74830 0.90917 0.88990 0.97107 0.96640 0.78142 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.19 37.16 0.30 -1.40 16 2 C -0.10 -1.14 2.25 -90.50 -0.20 -1.34 16 3 H 0.09 1.07 6.86 -51.93 -0.36 0.71 16 4 C -0.12 -0.92 5.43 -26.69 -0.14 -1.07 16 5 C -0.14 -0.89 5.75 -26.38 -0.15 -1.05 16 6 C 0.11 0.67 6.38 -3.49 -0.02 0.65 16 7 N -0.60 -5.79 2.40 -164.96 -0.40 -6.19 16 8 C 0.52 5.29 7.53 -10.99 -0.08 5.21 16 9 O -0.51 -7.33 11.53 5.56 0.06 -7.26 16 10 C -0.16 -1.04 4.20 -27.88 -0.12 -1.15 16 11 C 0.13 0.84 5.77 -4.04 -0.02 0.81 16 12 N -0.31 -2.46 3.44 -62.55 -0.22 -2.67 16 13 C 0.16 1.18 12.79 -90.39 -1.16 0.02 16 14 N -0.31 -3.45 12.36 29.59 0.37 -3.09 16 15 N -0.08 -1.00 13.43 60.35 0.81 -0.19 16 16 N -0.09 -1.03 13.08 60.35 0.79 -0.24 16 17 C 0.16 1.90 2.74 -67.60 -0.18 1.72 16 18 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 19 C -0.12 -1.97 2.76 -26.73 -0.07 -2.05 16 20 C 0.15 3.01 5.69 -4.04 -0.02 2.99 16 21 N -0.73 -19.18 5.60 -59.91 -0.34 -19.52 16 22 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 23 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 24 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 25 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 26 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 30 H 0.07 0.99 6.16 -51.93 -0.32 0.67 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.56 5.97 -51.93 -0.31 0.25 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.53 6.33 -51.93 -0.33 0.20 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.38 5.93 -51.93 -0.31 0.07 16 39 H 0.10 0.49 7.71 -51.93 -0.40 0.09 16 40 H 0.11 0.71 7.92 -51.93 -0.41 0.29 16 41 H 0.12 0.89 8.10 -51.93 -0.42 0.47 16 42 H 0.13 0.61 8.04 -51.93 -0.42 0.19 16 43 H 0.24 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.07 1.31 5.52 -51.93 -0.29 1.02 16 45 H 0.09 1.74 6.24 -51.93 -0.32 1.41 16 46 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 47 H 0.02 0.32 6.64 -51.93 -0.34 -0.03 16 48 H 0.38 10.80 7.67 -40.82 -0.31 10.48 16 49 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 381.01 15.07 5.74 5.74 Total: -1.00 -36.12 381.01 -7.07 -43.19 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.47 Total: 4.80 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.13 Total: -4.16 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: 1.74 Total: -60.03 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.06 Total: -7.26 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.12 -7.07 -43.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316680336.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.855 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds