Wall clock time and date at job start Tue Mar 31 2020 21:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.49658 * 2 1 4 4 C 1.53038 * 109.49545 * 239.90687 * 2 1 3 5 5 C 1.53042 * 109.53996 * 301.41350 * 4 2 1 6 6 C 1.53626 * 109.23701 * 298.51113 * 5 4 2 7 7 N 1.46925 * 108.54446 * 54.86049 * 6 5 4 8 8 C 1.34777 * 120.63332 * 126.36063 * 7 6 5 9 9 O 1.21278 * 119.99807 * 174.36405 * 8 7 6 10 10 C 1.50699 * 119.99888 * 354.36661 * 8 7 6 11 11 C 1.53002 * 109.47036 * 179.97438 * 10 8 7 12 12 N 1.46503 * 109.47122 * 179.97438 * 11 10 8 13 13 C 1.34595 * 126.43476 * 125.00196 * 12 11 10 14 14 N 1.31069 * 106.67785 * 180.02562 * 13 12 11 15 15 N 1.28849 * 107.99089 * 0.02562 * 14 13 12 16 16 N 1.28738 * 109.39289 * 359.73017 * 15 14 13 17 17 C 1.46931 * 118.73524 * 306.08876 * 7 6 5 18 18 H 1.08996 * 109.58966 * 293.92916 * 17 7 6 19 19 C 1.52997 * 109.58310 * 173.64683 * 17 7 6 20 20 C 1.53003 * 109.46822 * 181.87226 * 19 17 7 21 21 N 1.46500 * 109.47281 * 185.10963 * 20 19 17 22 22 C 1.36934 * 120.00586 * 179.97438 * 21 20 19 23 23 H 1.08004 * 119.99622 * 359.97438 * 22 21 20 24 24 C 1.38809 * 120.00512 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99898 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99975 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47181 * 89.99760 * 26 24 22 28 28 H 1.48503 * 109.46993 * 209.99575 * 26 24 22 29 29 H 1.48494 * 109.47147 * 329.99413 * 26 24 22 30 30 H 1.09000 * 109.47349 * 299.93268 * 1 2 3 31 31 H 1.09004 * 109.46790 * 59.93706 * 1 2 3 32 32 H 1.09003 * 109.46847 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46276 * 61.43790 * 4 2 1 34 34 H 1.09000 * 109.45856 * 181.39327 * 4 2 1 35 35 H 1.08991 * 109.49876 * 58.58888 * 5 4 2 36 36 H 1.08997 * 109.49641 * 178.68980 * 5 4 2 37 37 H 1.08994 * 109.74221 * 295.11680 * 6 5 4 38 38 H 1.09004 * 109.65764 * 174.54602 * 6 5 4 39 39 H 1.08999 * 109.47215 * 59.99986 * 10 8 7 40 40 H 1.09000 * 109.47209 * 299.99792 * 10 8 7 41 41 H 1.08999 * 109.46642 * 60.00233 * 11 10 8 42 42 H 1.09000 * 109.47439 * 300.00248 * 11 10 8 43 43 H 1.08002 * 126.66240 * 359.96993 * 13 12 11 44 44 H 1.08997 * 109.47478 * 301.86986 * 19 17 7 45 45 H 1.08996 * 109.47654 * 61.87560 * 19 17 7 46 46 H 1.09003 * 109.47153 * 305.10813 * 20 19 17 47 47 H 1.08995 * 109.47210 * 65.10727 * 20 19 17 48 48 H 0.97006 * 119.99999 * 359.97438 * 21 20 19 49 49 H 0.96999 * 119.99929 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7233 -1.2482 5 6 1.5030 -2.1561 -1.2656 6 6 2.0190 -2.9054 -0.0277 7 7 1.6516 -2.1379 1.1700 8 6 0.9748 -2.7216 2.1789 9 8 0.7665 -2.1081 3.2041 10 6 0.4768 -4.1364 2.0328 11 6 -0.2524 -4.5549 3.3111 12 7 -0.7370 -5.9301 3.1690 13 6 -0.4800 -6.9580 3.9990 14 7 -1.1009 -8.0025 3.5076 15 7 -1.7073 -7.6353 2.4317 16 7 -1.4938 -6.3824 2.2271 17 6 2.0414 -0.7235 1.2497 18 1 3.1274 -0.6460 1.3007 19 6 1.4229 -0.0907 2.4978 20 6 1.7919 1.3932 2.5534 21 7 1.3038 1.9711 3.8080 22 6 1.5191 3.2955 4.0813 23 1 2.0492 3.9140 3.3721 24 6 1.0571 3.8430 5.2703 25 7 0.4115 3.0892 6.1348 26 14 1.3503 5.6499 5.6427 27 1 0.2157 6.4533 5.1207 28 1 1.4582 5.8414 7.1113 29 1 2.6101 6.0913 4.9921 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6988 -0.1963 -2.1388 34 1 3.1305 -0.7447 -1.2351 35 1 0.4133 -2.1358 -1.2537 36 1 1.8481 -2.6633 -2.1665 37 1 3.1033 -3.0022 -0.0814 38 1 1.5635 -3.8947 0.0183 39 1 1.3220 -4.8032 1.8623 40 1 -0.2086 -4.1949 1.1874 41 1 -1.0975 -3.8881 3.4821 42 1 0.4333 -4.4964 4.1564 43 1 0.1219 -6.9283 4.8952 44 1 0.3385 -0.1941 2.4584 45 1 1.8037 -0.5932 3.3869 46 1 2.8754 1.5003 2.5014 47 1 1.3345 1.9131 1.7117 48 1 0.8280 1.4156 4.4452 49 1 0.0883 3.4718 6.9655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316680336.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:48 Heat of formation + Delta-G solvation = 82.542170 kcal Electronic energy + Delta-G solvation = -29957.602793 eV Core-core repulsion = 25957.428290 eV Total energy + Delta-G solvation = -4000.174502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.17573 -41.88360 -39.07885 -37.13543 -36.88111 -35.01311 -34.13592 -33.52140 -32.68633 -32.21827 -29.84109 -27.97923 -27.12433 -26.03978 -25.10763 -24.79931 -24.01592 -23.24512 -22.08059 -20.95821 -19.46217 -19.26365 -18.66918 -18.06800 -17.55344 -17.16830 -16.78414 -16.66533 -16.45582 -16.25992 -15.72299 -15.32858 -15.14216 -15.02464 -14.76968 -14.69891 -14.30907 -14.05127 -13.97274 -13.57919 -13.52658 -13.21848 -13.08166 -12.93288 -12.85816 -12.58420 -12.50646 -12.37286 -12.31002 -12.19695 -12.09352 -11.91455 -11.82635 -11.75688 -11.67962 -11.36218 -11.32457 -11.21076 -10.90949 -10.02628 -9.51241 -8.99526 -7.94902 -5.24426 0.27576 0.98364 1.22577 1.45065 1.47910 1.56324 1.59804 2.00219 2.55407 3.23870 3.37391 3.37730 3.52145 3.54740 3.80525 3.81303 3.86909 3.92293 4.08635 4.10575 4.22144 4.26484 4.35316 4.41248 4.47602 4.52811 4.59011 4.61472 4.62909 4.70303 4.77617 4.80289 4.84498 4.86163 4.91748 4.98857 5.13159 5.22029 5.23319 5.26069 5.32485 5.43846 5.45826 5.53328 5.55124 5.76874 6.26954 6.45545 7.19441 7.32097 7.56490 8.10234 8.33446 9.29014 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011200 B = 0.002849 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.509116 B = 9824.176175 C =11888.792626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.135 4.135 6 C 0.101 3.899 7 N -0.601 5.601 8 C 0.513 3.487 9 O -0.562 6.562 10 C -0.144 4.144 11 C 0.129 3.871 12 N -0.301 5.301 13 C 0.181 3.819 14 N -0.343 5.343 15 N -0.111 5.111 16 N -0.109 5.109 17 C 0.163 3.837 18 H 0.077 0.923 19 C -0.095 4.095 20 C 0.148 3.852 21 N -0.747 5.747 22 C -0.246 4.246 23 H 0.076 0.924 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.976 3.024 27 H -0.286 1.286 28 H -0.294 1.294 29 H -0.268 1.268 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.147 0.853 43 H 0.283 0.717 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.014 0.986 47 H 0.020 0.980 48 H 0.371 0.629 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.223 -19.355 -15.406 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.172 4.172 6 C -0.020 4.020 7 N -0.334 5.334 8 C 0.301 3.699 9 O -0.441 6.441 10 C -0.184 4.184 11 C 0.008 3.992 12 N -0.103 5.103 13 C -0.116 4.116 14 N -0.192 5.192 15 N -0.105 5.105 16 N -0.096 5.096 17 C 0.060 3.940 18 H 0.095 0.905 19 C -0.133 4.133 20 C 0.021 3.979 21 N -0.389 5.389 22 C -0.378 4.378 23 H 0.094 0.906 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.805 3.195 27 H -0.213 1.213 28 H -0.220 1.220 29 H -0.192 1.192 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.145 0.855 40 H 0.135 0.865 41 H 0.124 0.876 42 H 0.165 0.835 43 H 0.298 0.702 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.032 0.968 47 H 0.038 0.962 48 H 0.202 0.798 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.387 -19.547 -15.877 25.562 hybrid contribution 0.194 1.712 1.456 2.256 sum 4.580 -17.835 -14.421 23.389 Atomic orbital electron populations 1.21817 0.95480 1.01582 1.00918 1.21528 0.96178 0.99650 0.94843 0.90835 1.21538 1.01016 0.95882 0.96348 1.22040 1.01430 0.95544 0.98225 1.22174 1.01673 0.95307 0.82881 1.48152 1.55526 1.10672 1.19010 1.20631 0.77713 0.88580 0.82968 1.90900 1.58126 1.65042 1.30046 1.21881 1.03201 0.93963 0.99367 1.22160 1.01661 0.74318 1.01020 1.48902 1.31676 1.13286 1.16464 1.28655 1.00923 0.81574 1.00493 1.74950 1.11863 1.26369 1.05992 1.78633 1.18203 1.02833 1.10877 1.78804 1.10100 1.07394 1.13285 1.21120 0.98455 0.79914 0.94543 0.90498 1.21990 1.00536 0.92877 0.97921 1.20970 0.95630 0.93648 0.87653 1.42606 1.68169 1.08167 1.19923 1.19667 1.29022 0.87527 1.01568 0.90637 1.25638 1.01682 1.02582 0.97217 1.69850 1.44826 1.36673 1.10817 0.85097 0.78070 0.79715 0.76632 1.21330 1.22047 1.19228 0.95072 0.92044 0.92176 0.90910 0.90828 0.91598 0.88371 0.89502 0.87637 0.85511 0.86521 0.87649 0.83536 0.70197 0.92797 0.91289 0.96805 0.96218 0.79771 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.19 71.98 0.59 -2.67 16 2 C -0.10 -2.14 2.25 -10.72 -0.02 -2.16 16 3 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 4 C -0.11 -1.45 5.43 30.62 0.17 -1.28 16 5 C -0.13 -1.26 5.75 30.82 0.18 -1.08 16 6 C 0.10 0.92 6.38 86.51 0.55 1.48 16 7 N -0.60 -10.51 2.40 -794.21 -1.91 -12.42 16 8 C 0.51 9.96 7.53 87.66 0.66 10.62 16 9 O -0.56 -16.42 11.53 -3.02 -0.03 -16.45 16 10 C -0.14 -1.55 4.20 29.85 0.13 -1.43 16 11 C 0.13 1.47 5.77 86.38 0.50 1.97 16 12 N -0.30 -4.29 3.44 -351.81 -1.21 -5.50 16 13 C 0.18 2.21 12.79 180.27 2.31 4.52 16 14 N -0.34 -7.28 12.36 -60.30 -0.75 -8.02 16 15 N -0.11 -2.77 13.43 37.01 0.50 -2.28 16 16 N -0.11 -2.29 13.08 37.02 0.48 -1.81 16 17 C 0.16 3.86 2.74 44.97 0.12 3.99 16 18 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 19 C -0.10 -3.30 2.76 30.59 0.08 -3.22 16 20 C 0.15 6.20 5.69 86.38 0.49 6.69 16 21 N -0.75 -40.62 5.60 -343.45 -1.92 -42.54 16 22 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 23 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 24 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 25 N -0.97 -61.70 13.06 21.65 0.28 -61.42 16 26 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 28 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 29 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 30 H 0.03 0.94 6.16 -2.39 -0.01 0.92 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.06 1.27 5.97 -2.39 -0.01 1.25 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.75 6.33 -2.39 -0.02 0.73 16 36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.11 0.51 5.93 -2.39 -0.01 0.50 16 39 H 0.13 0.74 7.71 -2.39 -0.02 0.72 16 40 H 0.12 1.19 7.92 -2.39 -0.02 1.18 16 41 H 0.11 1.55 8.10 -2.39 -0.02 1.53 16 42 H 0.15 1.10 8.04 -2.39 -0.02 1.08 16 43 H 0.28 0.18 8.06 -2.91 -0.02 0.15 16 44 H 0.05 2.06 5.52 -2.39 -0.01 2.05 16 45 H 0.07 2.73 6.24 -2.39 -0.01 2.72 16 46 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.02 0.82 6.64 -2.39 -0.02 0.81 16 48 H 0.37 21.87 7.67 -92.70 -0.71 21.16 16 49 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -82.48 381.01 4.79 -77.69 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.26 Total: 23.85 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 7.06 Total: -0.34 kcal Atomic # 7 Polarization: -129.47 SS G_CDS: -4.52 Total: -133.99 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.03 Total: -16.45 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -82.48 4.79 -77.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316680336.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.234 kcal (2) G-P(sol) polarization free energy of solvation -82.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds