Wall clock time and date at job start Tue Mar 31 2020 21:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.52077 * 2 1 4 4 C 1.53037 * 109.49404 * 239.92528 * 2 1 3 5 5 C 1.53041 * 109.53975 * 178.68132 * 4 2 1 6 6 C 1.53197 * 109.31027 * 61.36285 * 5 4 2 7 7 N 1.46923 * 108.77468 * 305.36688 * 6 5 4 8 8 C 1.34780 * 120.63043 * 233.62895 * 7 6 5 9 9 O 1.21281 * 119.99710 * 186.40791 * 8 7 6 10 10 C 1.50702 * 120.00088 * 6.40694 * 8 7 6 11 11 C 1.52993 * 109.47017 * 180.02562 * 10 8 7 12 12 N 1.46501 * 109.47118 * 180.02562 * 11 10 8 13 13 C 1.34599 * 126.43689 * 124.99435 * 12 11 10 14 14 N 1.31077 * 106.67473 * 180.02562 * 13 12 11 15 15 N 1.28831 * 107.99260 * 0.02562 * 14 13 12 16 16 N 1.28742 * 109.40148 * 359.73568 * 15 14 13 17 17 C 1.46931 * 118.73907 * 53.61073 * 7 6 5 18 18 H 1.08999 * 109.70549 * 66.24732 * 17 7 6 19 19 C 1.53002 * 109.58494 * 186.60185 * 17 7 6 20 20 C 1.53003 * 109.47224 * 65.84094 * 19 17 7 21 21 N 1.46499 * 109.47453 * 175.73529 * 20 19 17 22 22 C 1.36929 * 120.00210 * 179.97438 * 21 20 19 23 23 H 1.07997 * 119.99823 * 0.02562 * 22 21 20 24 24 C 1.38819 * 120.00128 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99553 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00083 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47260 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47088 * 240.00183 * 26 24 22 29 29 H 1.48500 * 109.47281 * 120.00003 * 26 24 22 30 30 H 1.09007 * 109.46741 * 299.91382 * 1 2 3 31 31 H 1.09000 * 109.46965 * 59.91356 * 1 2 3 32 32 H 1.08996 * 109.47038 * 179.91352 * 1 2 3 33 33 H 1.09003 * 109.46307 * 298.69999 * 4 2 1 34 34 H 1.09001 * 109.46441 * 58.65988 * 4 2 1 35 35 H 1.08998 * 109.50077 * 181.30975 * 5 4 2 36 36 H 1.09002 * 109.49648 * 301.38173 * 5 4 2 37 37 H 1.09006 * 109.58530 * 65.15336 * 6 5 4 38 38 H 1.08997 * 109.58531 * 185.43805 * 6 5 4 39 39 H 1.08994 * 109.46548 * 300.00129 * 10 8 7 40 40 H 1.09002 * 109.46756 * 59.99671 * 10 8 7 41 41 H 1.09002 * 109.47434 * 300.00126 * 11 10 8 42 42 H 1.09002 * 109.47635 * 60.00199 * 11 10 8 43 43 H 1.07995 * 126.66562 * 0.04690 * 13 12 11 44 44 H 1.08994 * 109.47501 * 305.83912 * 19 17 7 45 45 H 1.09002 * 109.46873 * 185.83501 * 19 17 7 46 46 H 1.08999 * 109.47031 * 55.73383 * 20 19 17 47 47 H 1.09000 * 109.47054 * 295.74139 * 20 19 17 48 48 H 0.97003 * 119.99780 * 0.02562 * 21 20 19 49 49 H 0.96995 * 120.00224 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0407 -0.7230 -1.2484 5 6 3.5708 -0.6949 -1.2662 6 6 4.1053 -1.4267 -0.0310 7 7 3.5047 -0.8292 1.1693 8 6 4.2813 -0.3858 2.1777 9 8 3.7738 -0.0021 3.2103 10 6 5.7801 -0.3667 2.0222 11 6 6.4188 0.1766 3.3019 12 7 7.8758 0.1957 3.1504 13 6 8.6827 1.2606 3.3142 14 7 9.9047 0.8452 3.0853 15 7 9.8510 -0.4089 2.7955 16 7 8.6271 -0.8059 2.8390 17 6 2.0413 -0.7239 1.2494 18 1 1.6033 -1.7208 1.2992 19 6 1.6518 0.0703 2.4978 20 6 2.1348 1.5150 2.3545 21 7 1.6741 2.3002 3.5023 22 6 1.9881 3.6299 3.5927 23 1 2.5751 4.1000 2.8175 24 6 1.5511 4.3740 4.6801 25 7 0.8354 3.8011 5.6245 26 14 1.9789 6.1881 4.8030 27 1 2.7858 6.5876 3.6220 28 1 2.7611 6.4294 6.0420 29 1 0.7295 6.9898 4.8422 30 1 -0.3633 0.5125 0.8908 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3633 -1.0276 -0.0016 33 1 1.6967 -1.7572 -1.2355 34 1 1.6581 -0.2243 -2.1390 35 1 3.9333 -1.1896 -2.1673 36 1 3.9159 0.3390 -1.2548 37 1 3.8375 -2.4819 -0.0871 38 1 5.1898 -1.3267 0.0121 39 1 6.1392 -1.3793 1.8389 40 1 6.0500 0.2722 1.1813 41 1 6.0596 1.1893 3.4856 42 1 6.1489 -0.4627 4.1425 43 1 8.3818 2.2624 3.5826 44 1 2.1142 -0.3819 3.3752 45 1 0.5679 0.0593 2.6119 46 1 1.7324 1.9432 1.4364 47 1 3.2240 1.5319 2.3163 48 1 1.1473 1.8778 4.1988 49 1 0.6136 2.8590 5.5609 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316680374.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:54 Heat of formation + Delta-G solvation = 121.822392 kcal Electronic energy + Delta-G solvation = -30674.890009 eV Core-core repulsion = 26676.418825 eV Total energy + Delta-G solvation = -3998.471184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.32914 -41.08852 -38.06814 -36.31042 -35.38532 -34.01090 -33.01024 -32.64474 -31.62863 -30.83958 -28.48909 -26.61943 -26.23424 -24.75811 -23.96869 -23.36922 -22.56331 -22.30564 -21.42006 -20.06865 -18.97961 -18.03966 -17.24176 -17.18769 -16.67795 -16.21083 -16.11795 -15.82771 -15.00230 -14.92758 -14.64714 -14.22255 -14.09495 -13.78458 -13.69186 -13.55084 -13.22041 -13.11644 -12.79408 -12.72606 -12.47672 -12.34637 -12.00476 -11.91186 -11.74343 -11.49449 -11.34090 -11.10470 -11.07211 -11.03355 -10.87127 -10.59514 -10.57280 -10.50403 -10.30476 -10.19298 -10.02667 -9.12832 -8.85665 -8.83943 -8.48233 -6.81915 -6.02878 -2.98909 1.07086 1.73973 2.08714 2.50742 2.83101 3.51393 3.58832 3.67595 3.96933 4.08206 4.25614 4.28611 4.48086 4.55790 4.62746 4.64369 4.71656 4.78278 4.89403 5.03522 5.07075 5.11845 5.26114 5.27593 5.31799 5.37521 5.47296 5.50599 5.54878 5.56277 5.63955 5.67005 5.74910 5.87077 5.88510 5.95437 6.01581 6.15097 6.20248 6.27416 6.35303 6.44181 6.60277 6.95663 7.10477 7.31947 7.86779 8.14769 8.42634 8.84033 9.35664 10.22131 10.39745 11.46639 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.006904 B = 0.004682 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4054.485899 B = 5979.040781 C = 9257.449901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.107 3.893 7 N -0.606 5.606 8 C 0.510 3.490 9 O -0.489 6.489 10 C -0.155 4.155 11 C 0.128 3.872 12 N -0.305 5.305 13 C 0.166 3.834 14 N -0.311 5.311 15 N -0.081 5.081 16 N -0.097 5.097 17 C 0.162 3.838 18 H 0.068 0.932 19 C -0.142 4.142 20 C 0.171 3.829 21 N -0.738 5.738 22 C -0.321 4.321 23 H 0.059 0.941 24 C -0.049 4.049 25 N -0.948 5.948 26 Si 1.082 2.918 27 H -0.297 1.297 28 H -0.294 1.294 29 H -0.294 1.294 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.129 0.871 42 H 0.116 0.884 43 H 0.237 0.763 44 H 0.109 0.891 45 H 0.054 0.946 46 H 0.003 0.997 47 H 0.027 0.973 48 H 0.364 0.636 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.095 -12.524 -13.946 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 H 0.104 0.896 4 C -0.152 4.152 5 C -0.175 4.175 6 C -0.016 4.016 7 N -0.341 5.341 8 C 0.297 3.703 9 O -0.364 6.364 10 C -0.196 4.196 11 C 0.007 3.993 12 N -0.107 5.107 13 C -0.132 4.132 14 N -0.160 5.160 15 N -0.075 5.075 16 N -0.083 5.083 17 C 0.059 3.941 18 H 0.086 0.914 19 C -0.179 4.179 20 C 0.044 3.956 21 N -0.383 5.383 22 C -0.453 4.453 23 H 0.077 0.923 24 C -0.246 4.246 25 N -0.595 5.595 26 Si 0.914 3.086 27 H -0.223 1.223 28 H -0.221 1.221 29 H -0.221 1.221 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.148 0.852 42 H 0.135 0.865 43 H 0.253 0.747 44 H 0.127 0.873 45 H 0.073 0.927 46 H 0.021 0.979 47 H 0.044 0.956 48 H 0.197 0.803 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.773 -11.796 -12.960 19.170 hybrid contribution -0.837 -0.781 -0.778 1.384 sum 6.936 -12.577 -13.738 19.875 Atomic orbital electron populations 1.21788 0.94300 1.01542 1.02628 1.21672 0.96354 1.01009 0.93843 0.89567 1.21599 0.94770 1.00718 0.98113 1.21929 0.96669 1.01472 0.97386 1.21746 0.98143 0.97204 0.84551 1.47967 1.06869 1.61313 1.17948 1.19970 0.87845 0.78276 0.84206 1.90894 1.73074 1.44586 1.27850 1.21951 0.94346 1.04794 0.98532 1.22096 0.70024 1.07338 0.99851 1.48831 1.11245 1.06669 1.43973 1.27861 0.86212 0.97413 1.01740 1.75011 1.19008 1.04834 1.17112 1.78614 1.09567 1.04150 1.15207 1.78827 0.98362 1.14078 1.17068 1.21302 0.77933 0.98711 0.96128 0.91390 1.22484 1.00047 0.97618 0.97773 1.20852 0.96671 0.88215 0.89901 1.42283 1.64728 1.07703 1.23574 1.20037 1.31196 0.86617 1.07421 0.92306 1.25668 0.99542 1.05776 0.93645 1.70784 1.40794 1.12916 1.34991 0.83188 0.75721 0.74815 0.74856 1.22341 1.22114 1.22130 0.91519 0.92601 0.92954 0.91972 0.91682 0.90802 0.91343 0.91192 0.89940 0.87441 0.88201 0.85243 0.86541 0.74726 0.87321 0.92743 0.97919 0.95554 0.80313 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.97 37.16 0.33 -1.27 16 2 C -0.11 -1.23 1.99 -90.50 -0.18 -1.41 16 3 H 0.09 1.19 5.93 -51.93 -0.31 0.88 16 4 C -0.11 -0.95 5.17 -26.69 -0.14 -1.09 16 5 C -0.14 -0.99 6.08 -26.61 -0.16 -1.15 16 6 C 0.11 0.78 6.34 -3.71 -0.02 0.76 16 7 N -0.61 -6.45 2.94 -165.22 -0.49 -6.94 16 8 C 0.51 6.12 6.29 -10.98 -0.07 6.05 16 9 O -0.49 -7.89 9.85 5.56 0.05 -7.84 16 10 C -0.16 -1.35 4.21 -27.89 -0.12 -1.46 16 11 C 0.13 1.17 5.77 -4.04 -0.02 1.15 16 12 N -0.31 -3.12 3.44 -62.55 -0.22 -3.34 16 13 C 0.17 1.63 12.79 -90.38 -1.16 0.47 16 14 N -0.31 -4.06 12.36 29.59 0.37 -3.69 16 15 N -0.08 -1.15 13.43 60.35 0.81 -0.34 16 16 N -0.10 -1.21 13.08 60.35 0.79 -0.42 16 17 C 0.16 1.97 2.66 -67.60 -0.18 1.79 16 18 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 19 C -0.14 -2.33 4.20 -26.73 -0.11 -2.44 16 20 C 0.17 3.46 4.94 -4.04 -0.02 3.44 16 21 N -0.74 -19.01 5.60 -59.91 -0.34 -19.35 16 22 C -0.32 -9.17 9.99 -15.06 -0.15 -9.32 16 23 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 24 C -0.05 -1.44 5.50 -17.43 -0.10 -1.54 16 25 N -0.95 -29.77 13.70 55.49 0.76 -29.01 16 26 Si 1.08 26.20 29.92 -169.99 -5.09 21.11 16 27 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 30 H 0.07 0.89 6.75 -51.93 -0.35 0.54 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.49 5.94 -51.93 -0.31 0.18 16 39 H 0.11 0.81 7.68 -51.93 -0.40 0.41 16 40 H 0.10 0.78 7.95 -51.93 -0.41 0.37 16 41 H 0.13 1.20 8.04 -51.93 -0.42 0.78 16 42 H 0.12 1.09 8.10 -51.93 -0.42 0.67 16 43 H 0.24 1.31 8.06 -52.49 -0.42 0.88 16 44 H 0.11 1.98 5.58 -53.72 -0.30 1.68 16 45 H 0.05 0.92 6.93 -51.93 -0.36 0.56 16 46 H 0.00 0.07 5.97 -51.93 -0.31 -0.24 16 47 H 0.03 0.55 5.04 -51.93 -0.26 0.29 16 48 H 0.36 9.80 6.50 -40.82 -0.27 9.53 16 49 H 0.26 7.96 6.77 -40.82 -0.28 7.68 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -36.29 378.72 -7.13 -43.42 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.40 Total: 6.71 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -2.09 Total: -6.02 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 1.69 Total: -63.08 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.05 Total: -7.84 kcal Atomic # 14 Polarization: 26.20 SS G_CDS: -5.09 Total: 21.11 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.29 -7.13 -43.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316680374.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.239 kcal (2) G-P(sol) polarization free energy of solvation -36.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds