Wall clock time and date at job start Tue Mar 31 2020 21:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.52077 * 2 1 4 4 C 1.53037 * 109.49404 * 239.92528 * 2 1 3 5 5 C 1.53041 * 109.53975 * 178.68132 * 4 2 1 6 6 C 1.53197 * 109.31027 * 61.36285 * 5 4 2 7 7 N 1.46923 * 108.77468 * 305.36688 * 6 5 4 8 8 C 1.34780 * 120.63043 * 233.62895 * 7 6 5 9 9 O 1.21281 * 119.99710 * 186.40791 * 8 7 6 10 10 C 1.50702 * 120.00088 * 6.40694 * 8 7 6 11 11 C 1.52993 * 109.47017 * 180.02562 * 10 8 7 12 12 N 1.46501 * 109.47118 * 180.02562 * 11 10 8 13 13 C 1.34599 * 126.43689 * 124.99435 * 12 11 10 14 14 N 1.31077 * 106.67473 * 180.02562 * 13 12 11 15 15 N 1.28831 * 107.99260 * 0.02562 * 14 13 12 16 16 N 1.28742 * 109.40148 * 359.73568 * 15 14 13 17 17 C 1.46931 * 118.73907 * 53.61073 * 7 6 5 18 18 H 1.08999 * 109.70549 * 66.24732 * 17 7 6 19 19 C 1.53002 * 109.58494 * 186.60185 * 17 7 6 20 20 C 1.53003 * 109.47224 * 65.84094 * 19 17 7 21 21 N 1.46499 * 109.47453 * 175.73529 * 20 19 17 22 22 C 1.36929 * 120.00210 * 179.97438 * 21 20 19 23 23 H 1.07997 * 119.99823 * 0.02562 * 22 21 20 24 24 C 1.38819 * 120.00128 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99553 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00083 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47260 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47088 * 240.00183 * 26 24 22 29 29 H 1.48500 * 109.47281 * 120.00003 * 26 24 22 30 30 H 1.09007 * 109.46741 * 299.91382 * 1 2 3 31 31 H 1.09000 * 109.46965 * 59.91356 * 1 2 3 32 32 H 1.08996 * 109.47038 * 179.91352 * 1 2 3 33 33 H 1.09003 * 109.46307 * 298.69999 * 4 2 1 34 34 H 1.09001 * 109.46441 * 58.65988 * 4 2 1 35 35 H 1.08998 * 109.50077 * 181.30975 * 5 4 2 36 36 H 1.09002 * 109.49648 * 301.38173 * 5 4 2 37 37 H 1.09006 * 109.58530 * 65.15336 * 6 5 4 38 38 H 1.08997 * 109.58531 * 185.43805 * 6 5 4 39 39 H 1.08994 * 109.46548 * 300.00129 * 10 8 7 40 40 H 1.09002 * 109.46756 * 59.99671 * 10 8 7 41 41 H 1.09002 * 109.47434 * 300.00126 * 11 10 8 42 42 H 1.09002 * 109.47635 * 60.00199 * 11 10 8 43 43 H 1.07995 * 126.66562 * 0.04690 * 13 12 11 44 44 H 1.08994 * 109.47501 * 305.83912 * 19 17 7 45 45 H 1.09002 * 109.46873 * 185.83501 * 19 17 7 46 46 H 1.08999 * 109.47031 * 55.73383 * 20 19 17 47 47 H 1.09000 * 109.47054 * 295.74139 * 20 19 17 48 48 H 0.97003 * 119.99780 * 0.02562 * 21 20 19 49 49 H 0.96995 * 120.00224 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0407 -0.7230 -1.2484 5 6 3.5708 -0.6949 -1.2662 6 6 4.1053 -1.4267 -0.0310 7 7 3.5047 -0.8292 1.1693 8 6 4.2813 -0.3858 2.1777 9 8 3.7738 -0.0021 3.2103 10 6 5.7801 -0.3667 2.0222 11 6 6.4188 0.1766 3.3019 12 7 7.8758 0.1957 3.1504 13 6 8.6827 1.2606 3.3142 14 7 9.9047 0.8452 3.0853 15 7 9.8510 -0.4089 2.7955 16 7 8.6271 -0.8059 2.8390 17 6 2.0413 -0.7239 1.2494 18 1 1.6033 -1.7208 1.2992 19 6 1.6518 0.0703 2.4978 20 6 2.1348 1.5150 2.3545 21 7 1.6741 2.3002 3.5023 22 6 1.9881 3.6299 3.5927 23 1 2.5751 4.1000 2.8175 24 6 1.5511 4.3740 4.6801 25 7 0.8354 3.8011 5.6245 26 14 1.9789 6.1881 4.8030 27 1 2.7858 6.5876 3.6220 28 1 2.7611 6.4294 6.0420 29 1 0.7295 6.9898 4.8422 30 1 -0.3633 0.5125 0.8908 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3633 -1.0276 -0.0016 33 1 1.6967 -1.7572 -1.2355 34 1 1.6581 -0.2243 -2.1390 35 1 3.9333 -1.1896 -2.1673 36 1 3.9159 0.3390 -1.2548 37 1 3.8375 -2.4819 -0.0871 38 1 5.1898 -1.3267 0.0121 39 1 6.1392 -1.3793 1.8389 40 1 6.0500 0.2722 1.1813 41 1 6.0596 1.1893 3.4856 42 1 6.1489 -0.4627 4.1425 43 1 8.3818 2.2624 3.5826 44 1 2.1142 -0.3819 3.3752 45 1 0.5679 0.0593 2.6119 46 1 1.7324 1.9432 1.4364 47 1 3.2240 1.5319 2.3163 48 1 1.1473 1.8778 4.1988 49 1 0.6136 2.8590 5.5609 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316680374.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:52 Heat of formation + Delta-G solvation = 97.474241 kcal Electronic energy + Delta-G solvation = -30675.945824 eV Core-core repulsion = 26676.418825 eV Total energy + Delta-G solvation = -3999.526999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.21673 -42.05470 -38.96748 -37.32914 -36.87975 -35.28962 -34.12751 -33.54969 -32.50587 -32.44189 -29.81532 -27.69463 -27.05537 -26.06699 -24.95507 -24.81033 -23.82352 -23.38831 -22.29959 -21.04817 -19.89850 -19.35776 -18.80227 -18.10449 -17.63995 -17.24156 -17.05028 -16.72448 -16.29380 -16.11759 -15.68302 -15.55971 -15.41614 -15.05074 -14.72931 -14.60247 -14.31076 -14.13335 -13.81877 -13.63517 -13.41519 -13.27407 -13.12473 -12.83796 -12.70314 -12.61206 -12.54648 -12.45146 -12.25242 -12.16402 -11.94197 -11.90608 -11.85001 -11.69483 -11.45724 -11.38780 -11.31280 -11.12129 -10.80329 -9.95816 -9.52829 -8.93750 -8.36597 -5.26594 0.22503 0.92773 1.17605 1.56611 1.58897 1.69073 1.80110 1.99603 2.72941 3.18963 3.35302 3.43942 3.48235 3.52156 3.73094 3.78777 3.81607 3.83310 4.00459 4.07653 4.18476 4.23750 4.29812 4.35359 4.43318 4.50159 4.52283 4.57421 4.59892 4.61650 4.74547 4.80720 4.82876 4.86264 4.89669 4.99382 5.08828 5.17264 5.21609 5.23572 5.30608 5.39265 5.43481 5.53928 5.59601 5.74837 6.43712 6.52016 7.16088 7.21589 7.51930 8.07505 8.21845 9.16206 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.006904 B = 0.004682 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4054.485899 B = 5979.040781 C = 9257.449901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 H 0.056 0.944 4 C -0.109 4.109 5 C -0.133 4.133 6 C 0.102 3.898 7 N -0.605 5.605 8 C 0.506 3.494 9 O -0.540 6.540 10 C -0.142 4.142 11 C 0.132 3.868 12 N -0.300 5.300 13 C 0.178 3.822 14 N -0.339 5.339 15 N -0.109 5.109 16 N -0.103 5.103 17 C 0.167 3.833 18 H 0.087 0.913 19 C -0.129 4.129 20 C 0.178 3.822 21 N -0.752 5.752 22 C -0.322 4.322 23 H 0.060 0.940 24 C -0.108 4.108 25 N -0.979 5.979 26 Si 1.131 2.869 27 H -0.271 1.271 28 H -0.289 1.289 29 H -0.293 1.293 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.112 0.888 43 H 0.274 0.726 44 H 0.093 0.907 45 H 0.041 0.959 46 H -0.004 1.004 47 H 0.030 0.970 48 H 0.354 0.646 49 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.061 -13.077 -16.260 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.074 0.926 4 C -0.147 4.147 5 C -0.171 4.171 6 C -0.020 4.020 7 N -0.338 5.338 8 C 0.294 3.706 9 O -0.419 6.419 10 C -0.183 4.183 11 C 0.011 3.989 12 N -0.102 5.102 13 C -0.120 4.120 14 N -0.187 5.187 15 N -0.103 5.103 16 N -0.091 5.091 17 C 0.064 3.936 18 H 0.104 0.896 19 C -0.166 4.166 20 C 0.053 3.947 21 N -0.395 5.395 22 C -0.453 4.453 23 H 0.078 0.922 24 C -0.298 4.298 25 N -0.628 5.628 26 Si 0.956 3.044 27 H -0.196 1.196 28 H -0.216 1.216 29 H -0.220 1.220 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.147 0.853 42 H 0.131 0.869 43 H 0.290 0.710 44 H 0.111 0.889 45 H 0.060 0.940 46 H 0.014 0.986 47 H 0.047 0.953 48 H 0.185 0.815 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 8.766 -12.397 -15.357 21.596 hybrid contribution -1.182 -0.659 -0.108 1.358 sum 7.584 -13.056 -15.466 21.614 Atomic orbital electron populations 1.21768 0.94423 1.02454 1.01425 1.21591 0.96251 0.99571 0.95039 0.92597 1.21571 0.95631 1.01149 0.96305 1.21930 0.95708 1.01055 0.98435 1.22058 0.99135 0.97966 0.82830 1.48089 1.06131 1.60743 1.18831 1.20512 0.89205 0.77232 0.83634 1.90882 1.74201 1.47012 1.29767 1.21861 0.91622 1.06150 0.98632 1.22085 0.69367 1.07317 1.00142 1.48868 1.11385 1.06455 1.43504 1.28565 0.85202 0.98444 0.99750 1.74958 1.20736 1.04704 1.18343 1.78595 1.10334 1.04905 1.16462 1.78765 0.98204 1.14776 1.17317 1.21165 0.79385 0.98775 0.94273 0.89560 1.22267 0.98874 0.95715 0.99754 1.20957 0.96511 0.89783 0.87494 1.42557 1.64715 1.07518 1.24749 1.20368 1.30069 0.87876 1.07034 0.92187 1.27164 0.99421 1.09789 0.93467 1.70914 1.43072 1.12339 1.36465 0.82577 0.75851 0.70040 0.75919 1.19558 1.21637 1.22002 0.94723 0.91777 0.90972 0.90298 0.91061 0.88072 0.92686 0.89192 0.88050 0.85662 0.86687 0.85305 0.86938 0.71011 0.88941 0.94017 0.98642 0.95285 0.81522 0.94784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.97 71.98 0.65 -2.42 16 2 C -0.11 -2.23 1.99 -10.72 -0.02 -2.26 16 3 H 0.06 1.53 5.93 -2.39 -0.01 1.52 16 4 C -0.11 -1.47 5.17 30.62 0.16 -1.32 16 5 C -0.13 -1.45 6.08 30.67 0.19 -1.27 16 6 C 0.10 1.11 6.34 86.36 0.55 1.66 16 7 N -0.60 -11.71 2.94 -795.01 -2.34 -14.05 16 8 C 0.51 11.57 6.29 87.66 0.55 12.12 16 9 O -0.54 -17.66 9.85 -3.03 -0.03 -17.69 16 10 C -0.14 -2.16 4.21 29.85 0.13 -2.04 16 11 C 0.13 2.24 5.77 86.38 0.50 2.74 16 12 N -0.30 -5.66 3.44 -351.82 -1.21 -6.87 16 13 C 0.18 3.18 12.79 180.27 2.31 5.48 16 14 N -0.34 -8.49 12.36 -60.29 -0.74 -9.24 16 15 N -0.11 -3.00 13.43 37.01 0.50 -2.50 16 16 N -0.10 -2.46 13.08 37.02 0.48 -1.98 16 17 C 0.17 3.89 2.66 44.97 0.12 4.01 16 18 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 19 C -0.13 -4.36 4.20 30.60 0.13 -4.23 16 20 C 0.18 7.44 4.94 86.38 0.43 7.87 16 21 N -0.75 -40.10 5.60 -343.45 -1.92 -42.02 16 22 C -0.32 -18.64 9.99 84.04 0.84 -17.80 16 23 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 24 C -0.11 -6.39 5.50 84.86 0.47 -5.92 16 25 N -0.98 -62.99 13.70 21.65 0.30 -62.69 16 26 Si 1.13 52.65 29.92 68.60 2.05 54.70 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 29 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 30 H 0.03 0.95 6.75 -2.38 -0.02 0.93 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.10 0.77 5.94 -2.39 -0.01 0.75 16 39 H 0.13 1.51 7.68 -2.39 -0.02 1.49 16 40 H 0.11 1.46 7.95 -2.39 -0.02 1.44 16 41 H 0.13 2.27 8.04 -2.39 -0.02 2.25 16 42 H 0.11 2.06 8.10 -2.39 -0.02 2.04 16 43 H 0.27 2.28 8.06 -2.91 -0.02 2.26 16 44 H 0.09 3.51 5.58 -30.76 -0.17 3.34 16 45 H 0.04 1.48 6.93 -2.39 -0.02 1.46 16 46 H 0.00 -0.17 5.97 -2.39 -0.01 -0.19 16 47 H 0.03 1.23 5.04 -2.39 -0.01 1.22 16 48 H 0.35 20.02 6.50 -92.71 -0.60 19.41 16 49 H 0.24 15.70 6.77 -92.71 -0.63 15.07 16 Total: -1.00 -81.66 378.72 4.42 -77.24 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.35 Total: 28.45 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 6.98 Total: -3.36 kcal Atomic # 7 Polarization: -134.41 SS G_CDS: -4.94 Total: -139.34 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.03 Total: -17.69 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 2.05 Total: 54.70 kcal Total: -81.66 4.42 -77.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316680374.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.710 kcal (2) G-P(sol) polarization free energy of solvation -81.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds