Wall clock time and date at job start Tue Mar 31 2020 21:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.49445 * 2 1 4 4 C 1.53040 * 109.52430 * 120.08349 * 2 1 3 5 5 C 1.53040 * 109.54107 * 181.33456 * 4 2 1 6 6 C 1.53625 * 109.23693 * 298.51055 * 5 4 2 7 7 N 1.46928 * 108.54488 * 54.85682 * 6 5 4 8 8 C 1.34779 * 120.63250 * 126.36913 * 7 6 5 9 9 O 1.21278 * 120.00147 * 173.96821 * 8 7 6 10 10 C 1.50698 * 119.99785 * 353.96522 * 8 7 6 11 11 C 1.52999 * 109.47197 * 180.02562 * 10 8 7 12 12 N 1.46496 * 109.47408 * 179.97438 * 11 10 8 13 13 C 1.34604 * 126.43859 * 125.00092 * 12 11 10 14 14 N 1.31064 * 106.67897 * 180.02562 * 13 12 11 15 15 N 1.28839 * 107.99481 * 359.97438 * 14 13 12 16 16 N 1.28743 * 109.39310 * 359.73686 * 15 14 13 17 17 C 1.46921 * 118.73639 * 306.09067 * 7 6 5 18 18 H 1.09001 * 109.59242 * 294.07574 * 17 7 6 19 19 C 1.53002 * 109.58784 * 173.79200 * 17 7 6 20 20 C 1.53001 * 109.47172 * 295.27107 * 19 17 7 21 21 N 1.46494 * 109.47124 * 173.22775 * 20 19 17 22 22 C 1.36943 * 120.00121 * 179.97438 * 21 20 19 23 23 H 1.08010 * 119.99681 * 359.97438 * 22 21 20 24 24 C 1.38804 * 120.00264 * 179.97438 * 22 21 20 25 25 N 1.31615 * 120.00125 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00150 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47391 * 89.99412 * 26 24 22 28 28 H 1.48504 * 109.47003 * 209.99804 * 26 24 22 29 29 H 1.48506 * 109.46805 * 329.99279 * 26 24 22 30 30 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47423 * 300.06061 * 1 2 3 32 32 H 1.09004 * 109.47437 * 60.06445 * 1 2 3 33 33 H 1.09008 * 109.45708 * 301.34993 * 4 2 1 34 34 H 1.09002 * 109.46231 * 61.32373 * 4 2 1 35 35 H 1.09005 * 109.49746 * 58.58136 * 5 4 2 36 36 H 1.08989 * 109.49986 * 178.65024 * 5 4 2 37 37 H 1.09000 * 109.74226 * 295.11315 * 6 5 4 38 38 H 1.09005 * 109.66335 * 174.54581 * 6 5 4 39 39 H 1.08996 * 109.47028 * 60.00019 * 10 8 7 40 40 H 1.08994 * 109.47443 * 300.00431 * 10 8 7 41 41 H 1.09004 * 109.47389 * 300.00517 * 11 10 8 42 42 H 1.09006 * 109.47215 * 59.99974 * 11 10 8 43 43 H 1.08003 * 126.65811 * 359.96971 * 13 12 11 44 44 H 1.08998 * 109.47278 * 55.27077 * 19 17 7 45 45 H 1.08996 * 109.47242 * 175.26879 * 19 17 7 46 46 H 1.09001 * 109.46854 * 293.22967 * 20 19 17 47 47 H 1.08998 * 109.47180 * 53.22327 * 20 19 17 48 48 H 0.96995 * 120.00519 * 359.97438 * 21 20 19 49 49 H 0.97003 * 120.00819 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 3.5715 -0.6942 1.2654 6 6 4.1057 -1.4306 0.0275 7 7 3.5047 -0.8281 -1.1702 8 6 4.2807 -0.3849 -2.1791 9 8 3.7722 0.0095 -3.2071 10 6 5.7802 -0.3794 -2.0298 11 6 6.4181 0.1677 -3.3083 12 7 7.8758 0.1736 -3.1630 13 6 8.7640 -0.4097 -3.9891 14 7 9.9535 -0.1652 -3.4959 15 7 9.8038 0.5324 -2.4231 16 7 8.5498 0.7439 -2.2222 17 6 2.0413 -0.7234 -1.2498 18 1 1.6056 -1.7214 -1.2982 19 6 1.6509 0.0678 -2.4998 20 6 2.1576 1.5058 -2.3721 21 7 1.9276 2.2182 -3.6313 22 6 2.3021 3.5297 -3.7543 23 1 2.7666 4.0389 -2.9227 24 6 2.0846 4.2046 -4.9476 25 7 2.4441 5.4652 -5.0656 26 14 1.2806 3.3241 -6.3856 27 1 -0.1926 3.4940 -6.3089 28 1 1.7797 3.9000 -7.6602 29 1 1.6158 1.8785 -6.3308 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5147 0.8894 32 1 -0.3634 0.5128 -0.8906 33 1 1.6588 -0.2246 2.1389 34 1 1.6980 -1.7574 1.2349 35 1 3.9161 0.3398 1.2535 36 1 3.9345 -1.1883 2.1666 37 1 3.8350 -2.4851 0.0811 38 1 5.1902 -1.3315 -0.0187 39 1 6.1316 -1.3961 -1.8543 40 1 6.0591 0.2519 -1.1862 41 1 6.1393 -0.4633 -4.1523 42 1 6.0667 1.1846 -3.4833 43 1 8.5400 -0.9712 -4.8842 44 1 2.0969 -0.3979 -3.3786 45 1 0.5658 0.0727 -2.6025 46 1 1.6227 2.0093 -1.5668 47 1 3.2246 1.4967 -2.1494 48 1 1.5101 1.7611 -4.3780 49 1 2.2918 5.9371 -5.8994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316680375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:58 Heat of formation + Delta-G solvation = 125.360361 kcal Electronic energy + Delta-G solvation = -30798.459123 eV Core-core repulsion = 26800.141357 eV Total energy + Delta-G solvation = -3998.317766 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.27236 -41.07973 -38.02396 -36.26405 -35.32838 -33.91365 -32.89943 -32.58958 -31.58015 -31.10769 -28.85017 -26.78609 -26.24637 -24.94573 -23.92207 -23.38002 -22.51642 -21.80314 -21.43678 -20.02377 -19.00837 -18.05337 -17.35463 -17.20050 -16.72937 -16.18499 -16.00123 -15.76971 -15.04968 -14.84876 -14.67235 -14.18371 -14.13009 -13.64650 -13.56731 -13.44524 -13.24690 -12.92119 -12.72984 -12.59045 -12.52424 -12.25089 -12.10930 -11.88000 -11.77109 -11.47385 -11.40442 -11.28911 -11.13821 -10.98703 -10.91868 -10.77302 -10.61889 -10.46121 -10.45044 -10.22643 -9.96462 -9.50853 -8.88268 -8.81116 -8.51053 -7.02959 -5.67707 -2.99282 1.13786 1.79632 2.14031 2.54241 2.85249 3.43166 3.47756 3.50365 4.01657 4.07103 4.26026 4.32663 4.50797 4.60814 4.65238 4.66490 4.68031 4.77456 4.89737 5.03728 5.10268 5.15293 5.25686 5.31827 5.34825 5.40358 5.46813 5.49911 5.54929 5.61214 5.61961 5.63967 5.75832 5.84304 5.91110 5.98261 6.00318 6.07028 6.17154 6.21688 6.30976 6.40434 6.56389 6.93209 7.05365 7.32246 8.10170 8.17238 8.48835 8.52616 9.34286 10.08030 10.30346 11.51489 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.006972 B = 0.005048 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4014.859773 B = 5545.686743 C = 8756.362340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.114 4.114 5 C -0.137 4.137 6 C 0.107 3.893 7 N -0.608 5.608 8 C 0.512 3.488 9 O -0.487 6.487 10 C -0.155 4.155 11 C 0.127 3.873 12 N -0.303 5.303 13 C 0.160 3.840 14 N -0.312 5.312 15 N -0.081 5.081 16 N -0.089 5.089 17 C 0.163 3.837 18 H 0.068 0.932 19 C -0.141 4.141 20 C 0.176 3.824 21 N -0.747 5.747 22 C -0.230 4.230 23 H 0.084 0.916 24 C -0.001 4.001 25 N -0.940 5.940 26 Si 0.883 3.117 27 H -0.287 1.287 28 H -0.294 1.294 29 H -0.276 1.276 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.234 0.766 44 H 0.106 0.894 45 H 0.054 0.946 46 H 0.008 0.992 47 H 0.027 0.973 48 H 0.359 0.641 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 -20.898 10.950 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 H 0.104 0.896 4 C -0.151 4.151 5 C -0.175 4.175 6 C -0.016 4.016 7 N -0.343 5.343 8 C 0.298 3.702 9 O -0.362 6.362 10 C -0.196 4.196 11 C 0.006 3.994 12 N -0.105 5.105 13 C -0.139 4.139 14 N -0.160 5.160 15 N -0.075 5.075 16 N -0.076 5.076 17 C 0.060 3.940 18 H 0.086 0.914 19 C -0.179 4.179 20 C 0.049 3.951 21 N -0.392 5.392 22 C -0.361 4.361 23 H 0.102 0.898 24 C -0.195 4.195 25 N -0.589 5.589 26 Si 0.714 3.286 27 H -0.214 1.214 28 H -0.220 1.220 29 H -0.202 1.202 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.250 0.750 44 H 0.124 0.876 45 H 0.073 0.927 46 H 0.025 0.975 47 H 0.045 0.955 48 H 0.191 0.809 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.771 -19.911 11.370 23.237 hybrid contribution -1.345 -0.833 -1.589 2.242 sum 2.426 -20.744 9.782 23.062 Atomic orbital electron populations 1.21795 0.94356 1.01534 1.02603 1.21652 0.96259 1.01051 0.93895 0.89578 1.21590 0.94860 1.00608 0.98084 1.22004 0.96549 1.01668 0.97286 1.21831 0.98166 0.96935 0.84643 1.47982 1.06799 1.61361 1.18139 1.19958 0.87897 0.78203 0.84143 1.90939 1.73073 1.43990 1.28169 1.21943 0.94295 1.03932 0.99394 1.22114 0.70135 1.07440 0.99761 1.48838 1.11102 1.33627 1.16958 1.27746 0.84844 1.00929 1.00380 1.74980 1.21008 1.14270 1.05784 1.78639 1.07203 1.11833 1.09869 1.78892 1.00623 1.15933 1.12145 1.21279 0.78108 0.98628 0.96016 0.91438 1.22472 0.99835 0.97778 0.97771 1.20720 0.97201 0.88659 0.88525 1.42574 1.74465 1.10607 1.11527 1.19044 1.32253 0.85765 0.99006 0.89769 1.24629 1.01606 0.95796 0.97512 1.69706 1.53690 1.09264 1.26281 0.86539 0.79428 0.79309 0.83299 1.21362 1.22045 1.20169 0.92978 0.92529 0.91582 0.91645 0.92054 0.91062 0.90860 0.91327 0.89941 0.88524 0.87180 0.85875 0.85671 0.74991 0.87574 0.92744 0.97483 0.95497 0.80889 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.97 37.16 0.33 -1.12 16 2 C -0.11 -1.15 2.02 -90.50 -0.18 -1.33 16 3 H 0.09 1.13 6.21 -51.93 -0.32 0.81 16 4 C -0.11 -0.90 5.17 -26.69 -0.14 -1.04 16 5 C -0.14 -0.98 6.10 -26.39 -0.16 -1.14 16 6 C 0.11 0.75 6.38 -3.48 -0.02 0.73 16 7 N -0.61 -6.18 2.92 -164.96 -0.48 -6.66 16 8 C 0.51 6.00 6.13 -10.99 -0.07 5.93 16 9 O -0.49 -7.66 9.89 5.56 0.05 -7.61 16 10 C -0.15 -1.36 4.20 -27.88 -0.12 -1.47 16 11 C 0.13 1.21 5.77 -4.04 -0.02 1.19 16 12 N -0.30 -3.26 3.44 -62.55 -0.22 -3.47 16 13 C 0.16 1.51 12.79 -90.39 -1.16 0.36 16 14 N -0.31 -4.12 12.36 29.59 0.37 -3.75 16 15 N -0.08 -1.22 13.43 60.35 0.81 -0.41 16 16 N -0.09 -1.23 13.08 60.35 0.79 -0.44 16 17 C 0.16 1.84 2.65 -67.60 -0.18 1.66 16 18 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 19 C -0.14 -2.16 4.22 -26.73 -0.11 -2.27 16 20 C 0.18 3.45 4.37 -4.04 -0.02 3.43 16 21 N -0.75 -18.30 5.37 -59.91 -0.32 -18.62 16 22 C -0.23 -6.69 10.47 -15.06 -0.16 -6.84 16 23 H 0.08 2.64 8.06 -52.48 -0.42 2.21 16 24 C 0.00 -0.02 5.50 -17.43 -0.10 -0.11 16 25 N -0.94 -30.25 13.97 55.49 0.78 -29.47 16 26 Si 0.88 22.76 27.74 -169.99 -4.71 18.04 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 29 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.78 6.73 -51.93 -0.35 0.43 16 33 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.40 8.14 -51.94 -0.42 -0.02 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.47 5.93 -51.93 -0.31 0.16 16 39 H 0.10 0.62 7.70 -51.93 -0.40 0.22 16 40 H 0.11 1.01 7.93 -51.93 -0.41 0.59 16 41 H 0.12 0.91 8.04 -51.93 -0.42 0.49 16 42 H 0.13 1.55 8.10 -51.93 -0.42 1.13 16 43 H 0.23 0.99 8.06 -52.48 -0.42 0.57 16 44 H 0.11 1.79 5.70 -53.12 -0.30 1.49 16 45 H 0.05 0.82 6.88 -51.93 -0.36 0.46 16 46 H 0.01 0.15 6.65 -51.93 -0.35 -0.19 16 47 H 0.03 0.55 5.13 -51.93 -0.27 0.28 16 48 H 0.36 8.75 5.53 -40.82 -0.23 8.53 16 49 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -37.08 377.73 -6.86 -43.94 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.52 Total: 4.80 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.10 Total: -2.04 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: 1.72 Total: -62.83 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.05 Total: -7.61 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.71 Total: 18.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.08 -6.86 -43.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316680375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.301 kcal (2) G-P(sol) polarization free energy of solvation -37.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds