Wall clock time and date at job start Tue Mar 31 2020 21:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.49445 * 2 1 4 4 C 1.53040 * 109.52430 * 120.08349 * 2 1 3 5 5 C 1.53040 * 109.54107 * 181.33456 * 4 2 1 6 6 C 1.53625 * 109.23693 * 298.51055 * 5 4 2 7 7 N 1.46928 * 108.54488 * 54.85682 * 6 5 4 8 8 C 1.34779 * 120.63250 * 126.36913 * 7 6 5 9 9 O 1.21278 * 120.00147 * 173.96821 * 8 7 6 10 10 C 1.50698 * 119.99785 * 353.96522 * 8 7 6 11 11 C 1.52999 * 109.47197 * 180.02562 * 10 8 7 12 12 N 1.46496 * 109.47408 * 179.97438 * 11 10 8 13 13 C 1.34604 * 126.43859 * 125.00092 * 12 11 10 14 14 N 1.31064 * 106.67897 * 180.02562 * 13 12 11 15 15 N 1.28839 * 107.99481 * 359.97438 * 14 13 12 16 16 N 1.28743 * 109.39310 * 359.73686 * 15 14 13 17 17 C 1.46921 * 118.73639 * 306.09067 * 7 6 5 18 18 H 1.09001 * 109.59242 * 294.07574 * 17 7 6 19 19 C 1.53002 * 109.58784 * 173.79200 * 17 7 6 20 20 C 1.53001 * 109.47172 * 295.27107 * 19 17 7 21 21 N 1.46494 * 109.47124 * 173.22775 * 20 19 17 22 22 C 1.36943 * 120.00121 * 179.97438 * 21 20 19 23 23 H 1.08010 * 119.99681 * 359.97438 * 22 21 20 24 24 C 1.38804 * 120.00264 * 179.97438 * 22 21 20 25 25 N 1.31615 * 120.00125 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00150 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47391 * 89.99412 * 26 24 22 28 28 H 1.48504 * 109.47003 * 209.99804 * 26 24 22 29 29 H 1.48506 * 109.46805 * 329.99279 * 26 24 22 30 30 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47423 * 300.06061 * 1 2 3 32 32 H 1.09004 * 109.47437 * 60.06445 * 1 2 3 33 33 H 1.09008 * 109.45708 * 301.34993 * 4 2 1 34 34 H 1.09002 * 109.46231 * 61.32373 * 4 2 1 35 35 H 1.09005 * 109.49746 * 58.58136 * 5 4 2 36 36 H 1.08989 * 109.49986 * 178.65024 * 5 4 2 37 37 H 1.09000 * 109.74226 * 295.11315 * 6 5 4 38 38 H 1.09005 * 109.66335 * 174.54581 * 6 5 4 39 39 H 1.08996 * 109.47028 * 60.00019 * 10 8 7 40 40 H 1.08994 * 109.47443 * 300.00431 * 10 8 7 41 41 H 1.09004 * 109.47389 * 300.00517 * 11 10 8 42 42 H 1.09006 * 109.47215 * 59.99974 * 11 10 8 43 43 H 1.08003 * 126.65811 * 359.96971 * 13 12 11 44 44 H 1.08998 * 109.47278 * 55.27077 * 19 17 7 45 45 H 1.08996 * 109.47242 * 175.26879 * 19 17 7 46 46 H 1.09001 * 109.46854 * 293.22967 * 20 19 17 47 47 H 1.08998 * 109.47180 * 53.22327 * 20 19 17 48 48 H 0.96995 * 120.00519 * 359.97438 * 21 20 19 49 49 H 0.97003 * 120.00819 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 3.5715 -0.6942 1.2654 6 6 4.1057 -1.4306 0.0275 7 7 3.5047 -0.8281 -1.1702 8 6 4.2807 -0.3849 -2.1791 9 8 3.7722 0.0095 -3.2071 10 6 5.7802 -0.3794 -2.0298 11 6 6.4181 0.1677 -3.3083 12 7 7.8758 0.1736 -3.1630 13 6 8.7640 -0.4097 -3.9891 14 7 9.9535 -0.1652 -3.4959 15 7 9.8038 0.5324 -2.4231 16 7 8.5498 0.7439 -2.2222 17 6 2.0413 -0.7234 -1.2498 18 1 1.6056 -1.7214 -1.2982 19 6 1.6509 0.0678 -2.4998 20 6 2.1576 1.5058 -2.3721 21 7 1.9276 2.2182 -3.6313 22 6 2.3021 3.5297 -3.7543 23 1 2.7666 4.0389 -2.9227 24 6 2.0846 4.2046 -4.9476 25 7 2.4441 5.4652 -5.0656 26 14 1.2806 3.3241 -6.3856 27 1 -0.1926 3.4940 -6.3089 28 1 1.7797 3.9000 -7.6602 29 1 1.6158 1.8785 -6.3308 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5147 0.8894 32 1 -0.3634 0.5128 -0.8906 33 1 1.6588 -0.2246 2.1389 34 1 1.6980 -1.7574 1.2349 35 1 3.9161 0.3398 1.2535 36 1 3.9345 -1.1883 2.1666 37 1 3.8350 -2.4851 0.0811 38 1 5.1902 -1.3315 -0.0187 39 1 6.1316 -1.3961 -1.8543 40 1 6.0591 0.2519 -1.1862 41 1 6.1393 -0.4633 -4.1523 42 1 6.0667 1.1846 -3.4833 43 1 8.5400 -0.9712 -4.8842 44 1 2.0969 -0.3979 -3.3786 45 1 0.5658 0.0727 -2.6025 46 1 1.6227 2.0093 -1.5668 47 1 3.2246 1.4967 -2.1494 48 1 1.5101 1.7611 -4.3780 49 1 2.2918 5.9371 -5.8994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316680375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:57 Heat of formation + Delta-G solvation = 99.359194 kcal Electronic energy + Delta-G solvation = -30799.586618 eV Core-core repulsion = 26800.141357 eV Total energy + Delta-G solvation = -3999.445261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -45.18877 -41.99533 -38.87656 -37.27271 -36.77177 -35.13082 -34.07810 -33.53056 -32.94168 -32.40057 -30.12014 -27.85477 -27.01298 -26.15914 -24.82917 -24.64556 -23.50273 -23.35578 -22.29745 -21.00532 -20.02662 -19.48082 -18.75162 -18.08601 -17.62864 -17.15933 -16.84953 -16.69309 -16.58842 -15.87251 -15.69572 -15.50553 -15.00267 -14.92940 -14.78192 -14.56021 -14.31886 -14.18057 -13.81349 -13.60883 -13.49178 -13.33353 -13.18424 -13.00698 -12.89583 -12.60259 -12.51979 -12.36104 -12.28207 -12.20735 -12.04924 -11.87455 -11.84323 -11.77254 -11.61420 -11.38876 -11.36638 -11.17931 -10.86752 -9.90409 -9.47209 -9.12732 -8.01559 -5.31024 0.27012 0.98149 1.21186 1.35948 1.39309 1.48045 1.65501 2.06830 2.49218 3.24610 3.29997 3.40110 3.50905 3.54788 3.73969 3.83415 3.86253 3.87558 4.00613 4.11062 4.21181 4.29883 4.34718 4.37955 4.47933 4.53345 4.56509 4.63183 4.66281 4.66453 4.79686 4.85610 4.87215 4.91673 4.94827 5.02919 5.13917 5.22172 5.26074 5.27891 5.36138 5.40934 5.49520 5.58636 5.74973 5.79963 6.23846 6.48931 7.11398 7.28316 7.55070 7.92433 8.11787 9.20959 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.006972 B = 0.005048 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4014.859773 B = 5545.686743 C = 8756.362340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.049 0.951 4 C -0.108 4.108 5 C -0.136 4.136 6 C 0.104 3.896 7 N -0.606 5.606 8 C 0.507 3.493 9 O -0.535 6.535 10 C -0.143 4.143 11 C 0.130 3.870 12 N -0.301 5.301 13 C 0.181 3.819 14 N -0.342 5.342 15 N -0.111 5.111 16 N -0.113 5.113 17 C 0.167 3.833 18 H 0.095 0.905 19 C -0.129 4.129 20 C 0.181 3.819 21 N -0.748 5.748 22 C -0.221 4.221 23 H 0.045 0.955 24 C -0.068 4.068 25 N -0.989 5.989 26 Si 0.958 3.042 27 H -0.279 1.279 28 H -0.296 1.296 29 H -0.253 1.253 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.152 0.848 42 H 0.090 0.910 43 H 0.286 0.714 44 H 0.098 0.902 45 H 0.055 0.945 46 H -0.007 1.007 47 H 0.022 0.978 48 H 0.362 0.638 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.406 -25.103 11.084 27.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 H 0.068 0.932 4 C -0.146 4.146 5 C -0.174 4.174 6 C -0.018 4.018 7 N -0.340 5.340 8 C 0.295 3.705 9 O -0.413 6.413 10 C -0.184 4.184 11 C 0.010 3.990 12 N -0.103 5.103 13 C -0.116 4.116 14 N -0.190 5.190 15 N -0.105 5.105 16 N -0.100 5.100 17 C 0.064 3.936 18 H 0.112 0.888 19 C -0.166 4.166 20 C 0.055 3.945 21 N -0.393 5.393 22 C -0.353 4.353 23 H 0.063 0.937 24 C -0.258 4.258 25 N -0.641 5.641 26 Si 0.786 3.214 27 H -0.205 1.205 28 H -0.223 1.223 29 H -0.178 1.178 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.149 0.851 40 H 0.123 0.877 41 H 0.170 0.830 42 H 0.108 0.892 43 H 0.301 0.699 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.011 0.989 47 H 0.039 0.961 48 H 0.195 0.805 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.132 -24.171 11.578 26.984 hybrid contribution -1.140 0.507 -1.532 1.976 sum 1.992 -23.665 10.045 25.786 Atomic orbital electron populations 1.21775 0.93989 1.02673 1.01627 1.21594 0.96587 0.99346 0.95186 0.93213 1.21560 0.95312 1.01299 0.96399 1.22010 0.96036 1.00775 0.98591 1.22118 0.98940 0.97912 0.82812 1.48101 1.06333 1.60747 1.18807 1.20404 0.89047 0.77270 0.83752 1.90910 1.74086 1.46235 1.30051 1.21856 0.92134 1.05710 0.98660 1.22123 0.69446 1.06070 1.01383 1.48898 1.11417 1.33322 1.16664 1.28678 0.83362 0.99110 1.00482 1.74916 1.23001 1.15156 1.05959 1.78616 1.07833 1.12984 1.11089 1.78842 1.00631 1.16914 1.13588 1.21212 0.79169 0.99116 0.94137 0.88756 1.22285 0.99540 0.94973 0.99823 1.20828 0.96771 0.90975 0.85893 1.42601 1.74143 1.09176 1.13338 1.18973 1.30929 0.87583 0.97775 0.93724 1.25467 1.02999 0.96617 1.00744 1.69899 1.55770 1.11305 1.27129 0.85350 0.78330 0.79035 0.78728 1.20520 1.22270 1.17796 0.90692 0.92138 0.93982 0.91422 0.89920 0.93311 0.88328 0.88667 0.88473 0.85090 0.87739 0.83029 0.89207 0.69920 0.88400 0.92658 0.98896 0.96056 0.80524 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.97 71.98 0.65 -2.03 16 2 C -0.11 -2.13 2.02 -10.72 -0.02 -2.15 16 3 H 0.05 1.35 6.21 -2.39 -0.01 1.33 16 4 C -0.11 -1.40 5.17 30.62 0.16 -1.24 16 5 C -0.14 -1.57 6.10 30.82 0.19 -1.38 16 6 C 0.10 1.07 6.38 86.51 0.55 1.62 16 7 N -0.61 -10.98 2.92 -794.19 -2.32 -13.30 16 8 C 0.51 11.22 6.13 87.66 0.54 11.76 16 9 O -0.53 -16.55 9.89 -3.02 -0.03 -16.58 16 10 C -0.14 -2.26 4.20 29.85 0.13 -2.14 16 11 C 0.13 2.36 5.77 86.38 0.50 2.86 16 12 N -0.30 -6.08 3.44 -351.82 -1.21 -7.29 16 13 C 0.18 3.02 12.79 180.27 2.31 5.32 16 14 N -0.34 -8.69 12.36 -60.29 -0.74 -9.43 16 15 N -0.11 -3.33 13.43 37.01 0.50 -2.83 16 16 N -0.11 -3.09 13.08 37.02 0.48 -2.60 16 17 C 0.17 3.44 2.65 44.98 0.12 3.56 16 18 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 19 C -0.13 -3.85 4.22 30.60 0.13 -3.73 16 20 C 0.18 7.30 4.37 86.38 0.38 7.67 16 21 N -0.75 -37.31 5.37 -343.46 -1.84 -39.15 16 22 C -0.22 -13.34 10.47 84.03 0.88 -12.46 16 23 H 0.04 2.98 8.06 -2.91 -0.02 2.96 16 24 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 25 N -0.99 -65.85 13.97 21.65 0.30 -65.55 16 26 Si 0.96 47.56 27.74 68.60 1.90 49.46 16 27 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 29 H -0.25 -11.52 6.52 99.48 0.65 -10.87 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.04 0.98 6.73 -2.39 -0.02 0.96 16 33 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 38 H 0.10 0.75 5.93 -2.38 -0.01 0.74 16 39 H 0.13 1.19 7.70 -2.39 -0.02 1.17 16 40 H 0.10 1.82 7.93 -2.39 -0.02 1.80 16 41 H 0.15 1.86 8.04 -2.39 -0.02 1.85 16 42 H 0.09 2.32 8.10 -2.38 -0.02 2.30 16 43 H 0.29 1.18 8.06 -2.91 -0.02 1.15 16 44 H 0.10 3.20 5.70 -21.30 -0.12 3.08 16 45 H 0.05 1.62 6.88 -2.39 -0.02 1.60 16 46 H -0.01 -0.29 6.65 -2.39 -0.02 -0.30 16 47 H 0.02 0.91 5.13 -2.39 -0.01 0.89 16 48 H 0.36 17.48 5.53 -92.71 -0.51 16.97 16 49 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -86.07 377.73 4.29 -81.78 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.29 Total: 21.52 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 6.96 Total: 3.98 kcal Atomic # 7 Polarization: -135.33 SS G_CDS: -4.83 Total: -140.16 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.03 Total: -16.58 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.90 Total: 49.46 kcal Total: -86.07 4.29 -81.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316680375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.136 kcal (2) G-P(sol) polarization free energy of solvation -86.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds