Wall clock time and date at job start Tue Mar 31 2020 21:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.52778 * 2 1 4 4 C 1.53044 * 109.49701 * 120.08384 * 2 1 3 5 5 C 1.53035 * 109.54003 * 58.58393 * 4 2 1 6 6 C 1.53185 * 109.31428 * 61.36374 * 5 4 2 7 7 N 1.46925 * 108.77845 * 305.36788 * 6 5 4 8 8 C 1.34781 * 120.63151 * 233.58310 * 7 6 5 9 9 O 1.21281 * 120.00159 * 174.85699 * 8 7 6 10 10 C 1.50703 * 119.99674 * 354.86058 * 8 7 6 11 11 C 1.53002 * 109.46660 * 179.97438 * 10 8 7 12 12 N 1.46497 * 109.46823 * 179.97438 * 11 10 8 13 13 C 1.34607 * 126.43498 * 124.99747 * 12 11 10 14 14 N 1.31076 * 106.67604 * 180.02562 * 13 12 11 15 15 N 1.28838 * 107.99211 * 0.02562 * 14 13 12 16 16 N 1.28738 * 109.39889 * 359.73346 * 15 14 13 17 17 C 1.46924 * 118.73769 * 53.85695 * 7 6 5 18 18 H 1.09003 * 109.58717 * 65.92946 * 17 7 6 19 19 C 1.53007 * 109.58587 * 186.35187 * 17 7 6 20 20 C 1.52995 * 109.46749 * 180.92855 * 19 17 7 21 21 N 1.46503 * 109.46987 * 174.74784 * 20 19 17 22 22 C 1.36940 * 120.00126 * 180.02562 * 21 20 19 23 23 H 1.07992 * 120.00078 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99740 * 179.97438 * 22 21 20 25 25 N 1.31622 * 120.00306 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99979 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46710 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47086 * 119.99988 * 26 24 22 29 29 H 1.48496 * 109.47204 * 240.00314 * 26 24 22 30 30 H 1.09003 * 109.47159 * 299.92274 * 1 2 3 31 31 H 1.09005 * 109.46963 * 59.91848 * 1 2 3 32 32 H 1.08999 * 109.47405 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.45716 * 298.56163 * 4 2 1 34 34 H 1.09000 * 109.44924 * 178.59613 * 4 2 1 35 35 H 1.09001 * 109.49703 * 301.41563 * 5 4 2 36 36 H 1.09004 * 109.49716 * 181.32103 * 5 4 2 37 37 H 1.09001 * 109.58864 * 185.57560 * 6 5 4 38 38 H 1.09005 * 109.58603 * 65.15309 * 6 5 4 39 39 H 1.08999 * 109.47330 * 59.99889 * 10 8 7 40 40 H 1.09001 * 109.46977 * 299.99469 * 10 8 7 41 41 H 1.09001 * 109.47025 * 299.99480 * 11 10 8 42 42 H 1.08999 * 109.47307 * 59.99915 * 11 10 8 43 43 H 1.07993 * 126.66128 * 359.96674 * 13 12 11 44 44 H 1.08994 * 109.46802 * 300.92960 * 19 17 7 45 45 H 1.09002 * 109.46815 * 60.92799 * 19 17 7 46 46 H 1.08997 * 109.47505 * 294.74054 * 20 19 17 47 47 H 1.09000 * 109.47545 * 54.74807 * 20 19 17 48 48 H 0.97003 * 119.99630 * 359.97438 * 21 20 19 49 49 H 0.96996 * 119.99987 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7232 1.2483 5 6 1.5029 -2.1558 1.2660 6 6 2.0138 -2.9040 0.0308 7 7 1.6514 -2.1382 -1.1696 8 6 0.9746 -2.7221 -2.1783 9 8 0.5999 -2.0581 -3.1215 10 6 0.6835 -4.2001 -2.1342 11 6 -0.0911 -4.6049 -3.3900 12 7 -0.3736 -6.0418 -3.3474 13 6 -1.5836 -6.6221 -3.4521 14 7 -1.3895 -7.9153 -3.3633 15 7 -0.1263 -8.1187 -3.2115 16 7 0.4911 -6.9890 -3.2067 17 6 2.0461 -0.7254 -1.2520 18 1 3.1327 -0.6516 -1.2985 19 6 1.4323 -0.0935 -2.5030 20 6 1.8638 1.3713 -2.5985 21 7 1.3806 1.9415 -3.8585 22 6 1.6483 3.2489 -4.1656 23 1 2.2152 3.8597 -3.4788 24 6 1.1909 3.7889 -5.3598 25 7 0.4995 3.0446 -6.1967 26 14 1.5554 5.5726 -5.7784 27 1 2.3429 6.1878 -4.6800 28 1 2.3347 5.6354 -7.0409 29 1 0.2788 6.3122 -5.9473 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6987 -0.1958 2.1389 34 1 3.1304 -0.7446 1.2350 35 1 0.4132 -2.1355 1.2541 36 1 1.8479 -2.6628 2.1671 37 1 1.5552 -3.8919 -0.0137 38 1 3.0978 -3.0043 0.0867 39 1 0.0866 -4.4266 -1.2507 40 1 1.6213 -4.7539 -2.0910 41 1 -1.0289 -4.0510 -3.4328 42 1 0.5054 -4.3783 -4.2737 43 1 -2.5306 -6.1196 -3.5827 44 1 1.7744 -0.6315 -3.3870 45 1 0.3454 -0.1489 -2.4420 46 1 1.4428 1.9294 -1.7622 47 1 2.9516 1.4325 -2.5655 48 1 0.8717 1.3927 -4.4756 49 1 0.1802 3.4219 -7.0312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316680376.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:02 Heat of formation + Delta-G solvation = 106.969169 kcal Electronic energy + Delta-G solvation = -29924.910017 eV Core-core repulsion = 25925.794749 eV Total energy + Delta-G solvation = -3999.115268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.46685 -41.03016 -38.22820 -36.36812 -35.33495 -33.85564 -32.98662 -32.75859 -31.67322 -30.87544 -28.53969 -26.91579 -26.40886 -24.80585 -24.11430 -23.88506 -22.92585 -22.15835 -20.90705 -20.12397 -18.74728 -18.08701 -17.38042 -17.10841 -16.61311 -16.30704 -16.09239 -15.86541 -15.37810 -14.92974 -14.63118 -14.35925 -14.15561 -13.72753 -13.63449 -13.32528 -13.22815 -13.08767 -12.93263 -12.91218 -12.51246 -12.45682 -11.99345 -11.92443 -11.70060 -11.47836 -11.38567 -11.25721 -11.16241 -11.11890 -10.89911 -10.83310 -10.65495 -10.62969 -10.45254 -10.22502 -9.97505 -9.64817 -8.99444 -8.82830 -8.61748 -6.84298 -5.70879 -2.98874 0.93301 1.59203 1.95624 2.38709 2.74776 3.45222 3.50347 3.52908 3.80529 3.90860 4.09497 4.16873 4.39934 4.44952 4.59580 4.62572 4.66837 4.73091 4.81161 4.93272 5.01499 5.07245 5.11710 5.17609 5.22651 5.40698 5.43467 5.48155 5.55620 5.59911 5.62151 5.66355 5.75456 5.80306 5.91248 5.98014 6.02867 6.17170 6.23010 6.33721 6.37500 6.51362 6.58886 7.01417 7.10335 7.24737 7.74223 7.99263 8.29573 8.48333 9.59137 10.20421 10.55056 11.52089 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.002847 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.036013 B = 9832.200122 C =11937.068150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.106 3.894 7 N -0.603 5.603 8 C 0.516 3.484 9 O -0.513 6.513 10 C -0.158 4.158 11 C 0.128 3.872 12 N -0.306 5.306 13 C 0.163 3.837 14 N -0.310 5.310 15 N -0.079 5.079 16 N -0.093 5.093 17 C 0.156 3.844 18 H 0.073 0.927 19 C -0.115 4.115 20 C 0.147 3.853 21 N -0.731 5.731 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.016 4.016 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.236 0.764 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.016 0.984 47 H 0.011 0.989 48 H 0.385 0.615 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 -17.111 16.072 23.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 H 0.106 0.894 4 C -0.153 4.153 5 C -0.175 4.175 6 C -0.018 4.018 7 N -0.336 5.336 8 C 0.302 3.698 9 O -0.389 6.389 10 C -0.199 4.199 11 C 0.007 3.993 12 N -0.109 5.109 13 C -0.136 4.136 14 N -0.159 5.159 15 N -0.073 5.073 16 N -0.080 5.080 17 C 0.054 3.946 18 H 0.091 0.909 19 C -0.152 4.152 20 C 0.019 3.981 21 N -0.375 5.375 22 C -0.367 4.367 23 H 0.087 0.913 24 C -0.212 4.212 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.252 0.748 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.033 0.967 47 H 0.028 0.972 48 H 0.219 0.781 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.338 -17.745 15.722 23.711 hybrid contribution -0.421 1.786 -0.424 1.883 sum -0.759 -15.959 15.298 22.121 Atomic orbital electron populations 1.21861 0.94736 1.01402 1.02222 1.21639 0.96889 1.00077 0.93787 0.89375 1.21572 1.00491 0.95114 0.98159 1.21957 1.01782 0.96590 0.97187 1.21771 1.00646 0.94779 0.84554 1.48073 1.56027 1.11866 1.17650 1.20042 0.78560 0.88395 0.82778 1.90930 1.50496 1.63475 1.33955 1.21990 1.03459 0.95839 0.98597 1.22075 1.04803 0.71407 1.01005 1.48845 1.05651 1.10367 1.45988 1.27809 0.93217 0.90493 1.02075 1.75016 1.09819 1.12938 1.18088 1.78650 0.98313 1.15392 1.14962 1.78871 1.18972 0.92341 1.17784 1.21504 0.98545 0.78203 0.96385 0.90926 1.22296 1.01834 0.95433 0.95687 1.20795 0.95869 0.91520 0.89918 1.42348 1.65578 1.10751 1.18784 1.19278 1.28019 0.87774 1.01654 0.91300 1.24740 1.01090 0.98077 0.97301 1.69685 1.41950 1.35254 1.11236 0.86141 0.77357 0.84980 0.77882 1.20629 1.21926 1.21923 0.93163 0.91349 0.93087 0.91644 0.91803 0.91051 0.90906 0.90076 0.91053 0.88203 0.87149 0.85607 0.86308 0.74833 0.89648 0.90323 0.96666 0.97154 0.78135 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.21 37.15 0.30 -1.33 16 2 C -0.10 -1.12 2.34 -90.28 -0.21 -1.33 16 3 H 0.09 1.05 6.93 -51.93 -0.36 0.69 16 4 C -0.12 -0.91 5.43 -26.69 -0.14 -1.05 16 5 C -0.14 -0.86 5.74 -26.62 -0.15 -1.02 16 6 C 0.11 0.68 6.32 -3.72 -0.02 0.65 16 7 N -0.60 -5.78 2.40 -164.96 -0.40 -6.17 16 8 C 0.52 5.27 7.61 -10.98 -0.08 5.18 16 9 O -0.51 -7.29 11.39 5.56 0.06 -7.23 16 10 C -0.16 -1.03 4.25 -27.88 -0.12 -1.15 16 11 C 0.13 0.84 5.77 -4.04 -0.02 0.81 16 12 N -0.31 -2.46 3.44 -62.55 -0.22 -2.67 16 13 C 0.16 1.18 12.79 -90.38 -1.16 0.03 16 14 N -0.31 -3.45 12.36 29.59 0.37 -3.09 16 15 N -0.08 -1.00 13.43 60.35 0.81 -0.19 16 16 N -0.09 -1.03 13.08 60.35 0.79 -0.24 16 17 C 0.16 1.89 2.72 -67.37 -0.18 1.71 16 18 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.11 -1.91 2.81 -26.73 -0.08 -1.98 16 20 C 0.15 2.99 5.81 -4.04 -0.02 2.97 16 21 N -0.73 -19.17 5.60 -59.91 -0.34 -19.51 16 22 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 25 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 26 Si 0.90 22.73 29.55 -169.99 -5.02 17.71 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.96 6.36 -51.93 -0.33 0.63 16 32 H 0.05 0.53 5.97 -51.93 -0.31 0.22 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.49 6.33 -51.93 -0.33 0.16 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.38 5.96 -51.93 -0.31 0.07 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.50 7.48 -51.93 -0.39 0.11 16 40 H 0.11 0.69 8.11 -51.93 -0.42 0.27 16 41 H 0.13 0.62 8.04 -51.93 -0.42 0.20 16 42 H 0.12 0.88 8.10 -51.93 -0.42 0.46 16 43 H 0.24 0.54 8.06 -52.49 -0.42 0.11 16 44 H 0.09 1.61 6.37 -51.93 -0.33 1.28 16 45 H 0.08 1.40 5.24 -51.93 -0.27 1.13 16 46 H 0.02 0.31 6.91 -51.93 -0.36 -0.05 16 47 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 48 H 0.38 10.79 7.67 -40.82 -0.31 10.48 16 49 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -36.11 381.57 -7.09 -43.20 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.49 Total: 4.55 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -2.14 Total: -4.00 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: 1.74 Total: -59.98 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: 0.06 Total: -7.23 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.11 -7.09 -43.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316680376.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.172 kcal (2) G-P(sol) polarization free energy of solvation -36.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds