Wall clock time and date at job start Tue Mar 31 2020 21:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.52778 * 2 1 4 4 C 1.53044 * 109.49701 * 120.08384 * 2 1 3 5 5 C 1.53035 * 109.54003 * 58.58393 * 4 2 1 6 6 C 1.53185 * 109.31428 * 61.36374 * 5 4 2 7 7 N 1.46925 * 108.77845 * 305.36788 * 6 5 4 8 8 C 1.34781 * 120.63151 * 233.58310 * 7 6 5 9 9 O 1.21281 * 120.00159 * 174.85699 * 8 7 6 10 10 C 1.50703 * 119.99674 * 354.86058 * 8 7 6 11 11 C 1.53002 * 109.46660 * 179.97438 * 10 8 7 12 12 N 1.46497 * 109.46823 * 179.97438 * 11 10 8 13 13 C 1.34607 * 126.43498 * 124.99747 * 12 11 10 14 14 N 1.31076 * 106.67604 * 180.02562 * 13 12 11 15 15 N 1.28838 * 107.99211 * 0.02562 * 14 13 12 16 16 N 1.28738 * 109.39889 * 359.73346 * 15 14 13 17 17 C 1.46924 * 118.73769 * 53.85695 * 7 6 5 18 18 H 1.09003 * 109.58717 * 65.92946 * 17 7 6 19 19 C 1.53007 * 109.58587 * 186.35187 * 17 7 6 20 20 C 1.52995 * 109.46749 * 180.92855 * 19 17 7 21 21 N 1.46503 * 109.46987 * 174.74784 * 20 19 17 22 22 C 1.36940 * 120.00126 * 180.02562 * 21 20 19 23 23 H 1.07992 * 120.00078 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99740 * 179.97438 * 22 21 20 25 25 N 1.31622 * 120.00306 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99979 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46710 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47086 * 119.99988 * 26 24 22 29 29 H 1.48496 * 109.47204 * 240.00314 * 26 24 22 30 30 H 1.09003 * 109.47159 * 299.92274 * 1 2 3 31 31 H 1.09005 * 109.46963 * 59.91848 * 1 2 3 32 32 H 1.08999 * 109.47405 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.45716 * 298.56163 * 4 2 1 34 34 H 1.09000 * 109.44924 * 178.59613 * 4 2 1 35 35 H 1.09001 * 109.49703 * 301.41563 * 5 4 2 36 36 H 1.09004 * 109.49716 * 181.32103 * 5 4 2 37 37 H 1.09001 * 109.58864 * 185.57560 * 6 5 4 38 38 H 1.09005 * 109.58603 * 65.15309 * 6 5 4 39 39 H 1.08999 * 109.47330 * 59.99889 * 10 8 7 40 40 H 1.09001 * 109.46977 * 299.99469 * 10 8 7 41 41 H 1.09001 * 109.47025 * 299.99480 * 11 10 8 42 42 H 1.08999 * 109.47307 * 59.99915 * 11 10 8 43 43 H 1.07993 * 126.66128 * 359.96674 * 13 12 11 44 44 H 1.08994 * 109.46802 * 300.92960 * 19 17 7 45 45 H 1.09002 * 109.46815 * 60.92799 * 19 17 7 46 46 H 1.08997 * 109.47505 * 294.74054 * 20 19 17 47 47 H 1.09000 * 109.47545 * 54.74807 * 20 19 17 48 48 H 0.97003 * 119.99630 * 359.97438 * 21 20 19 49 49 H 0.96996 * 119.99987 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7232 1.2483 5 6 1.5029 -2.1558 1.2660 6 6 2.0138 -2.9040 0.0308 7 7 1.6514 -2.1382 -1.1696 8 6 0.9746 -2.7221 -2.1783 9 8 0.5999 -2.0581 -3.1215 10 6 0.6835 -4.2001 -2.1342 11 6 -0.0911 -4.6049 -3.3900 12 7 -0.3736 -6.0418 -3.3474 13 6 -1.5836 -6.6221 -3.4521 14 7 -1.3895 -7.9153 -3.3633 15 7 -0.1263 -8.1187 -3.2115 16 7 0.4911 -6.9890 -3.2067 17 6 2.0461 -0.7254 -1.2520 18 1 3.1327 -0.6516 -1.2985 19 6 1.4323 -0.0935 -2.5030 20 6 1.8638 1.3713 -2.5985 21 7 1.3806 1.9415 -3.8585 22 6 1.6483 3.2489 -4.1656 23 1 2.2152 3.8597 -3.4788 24 6 1.1909 3.7889 -5.3598 25 7 0.4995 3.0446 -6.1967 26 14 1.5554 5.5726 -5.7784 27 1 2.3429 6.1878 -4.6800 28 1 2.3347 5.6354 -7.0409 29 1 0.2788 6.3122 -5.9473 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6987 -0.1958 2.1389 34 1 3.1304 -0.7446 1.2350 35 1 0.4132 -2.1355 1.2541 36 1 1.8479 -2.6628 2.1671 37 1 1.5552 -3.8919 -0.0137 38 1 3.0978 -3.0043 0.0867 39 1 0.0866 -4.4266 -1.2507 40 1 1.6213 -4.7539 -2.0910 41 1 -1.0289 -4.0510 -3.4328 42 1 0.5054 -4.3783 -4.2737 43 1 -2.5306 -6.1196 -3.5827 44 1 1.7744 -0.6315 -3.3870 45 1 0.3454 -0.1489 -2.4420 46 1 1.4428 1.9294 -1.7622 47 1 2.9516 1.4325 -2.5655 48 1 0.8717 1.3927 -4.4756 49 1 0.1802 3.4219 -7.0312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316680376.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:01 Heat of formation + Delta-G solvation = 82.921645 kcal Electronic energy + Delta-G solvation = -29925.952796 eV Core-core repulsion = 25925.794749 eV Total energy + Delta-G solvation = -4000.158047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.17503 -41.87798 -39.05396 -37.13929 -36.87788 -35.00802 -34.15111 -33.52000 -32.68771 -32.21579 -29.86387 -27.95159 -27.13998 -26.03933 -25.09578 -24.79755 -23.99886 -23.24025 -22.08640 -20.96258 -19.47991 -19.26416 -18.64740 -18.06504 -17.46425 -17.12637 -16.95161 -16.63840 -16.48751 -16.25230 -15.68202 -15.31942 -15.21266 -15.01241 -14.76851 -14.58068 -14.31713 -14.15019 -13.87052 -13.65100 -13.50215 -13.23562 -13.07890 -12.93495 -12.87234 -12.61087 -12.47005 -12.38758 -12.28696 -12.19586 -12.07237 -11.91238 -11.82814 -11.75236 -11.66546 -11.35922 -11.31086 -11.20761 -10.90900 -10.04759 -9.48189 -8.99645 -7.95108 -5.24615 0.27407 0.98370 1.22469 1.45171 1.46992 1.57045 1.60567 1.99724 2.55225 3.23645 3.37520 3.37658 3.52026 3.55470 3.80339 3.81382 3.85020 3.93604 4.08865 4.11582 4.21800 4.26658 4.35127 4.42475 4.47993 4.53539 4.59609 4.61886 4.63129 4.71064 4.79274 4.80560 4.83943 4.86015 4.92807 4.99251 5.13296 5.22936 5.23307 5.26705 5.32471 5.43934 5.46809 5.53631 5.55878 5.77327 6.26912 6.45505 7.19329 7.32064 7.56436 8.10092 8.33362 9.28958 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.002847 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.036013 B = 9832.200122 C =11937.068150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.072 0.928 4 C -0.111 4.111 5 C -0.133 4.133 6 C 0.101 3.899 7 N -0.601 5.601 8 C 0.512 3.488 9 O -0.561 6.561 10 C -0.143 4.143 11 C 0.129 3.871 12 N -0.301 5.301 13 C 0.181 3.819 14 N -0.343 5.343 15 N -0.111 5.111 16 N -0.108 5.108 17 C 0.162 3.838 18 H 0.075 0.925 19 C -0.091 4.091 20 C 0.147 3.853 21 N -0.746 5.746 22 C -0.245 4.245 23 H 0.076 0.924 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.976 3.024 27 H -0.265 1.265 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.145 0.855 42 H 0.107 0.893 43 H 0.282 0.718 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.021 0.979 47 H 0.012 0.988 48 H 0.371 0.629 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.842 -17.507 18.464 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.090 0.910 4 C -0.149 4.149 5 C -0.171 4.171 6 C -0.021 4.021 7 N -0.333 5.333 8 C 0.300 3.700 9 O -0.440 6.440 10 C -0.184 4.184 11 C 0.008 3.992 12 N -0.103 5.103 13 C -0.117 4.117 14 N -0.192 5.192 15 N -0.105 5.105 16 N -0.096 5.096 17 C 0.058 3.942 18 H 0.093 0.907 19 C -0.129 4.129 20 C 0.020 3.980 21 N -0.388 5.388 22 C -0.377 4.377 23 H 0.094 0.906 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.805 3.195 27 H -0.189 1.189 28 H -0.220 1.220 29 H -0.218 1.218 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.144 0.856 40 H 0.136 0.864 41 H 0.163 0.837 42 H 0.125 0.875 43 H 0.297 0.703 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.039 0.961 47 H 0.030 0.970 48 H 0.203 0.797 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.153 -18.164 18.190 25.707 hybrid contribution -0.474 1.926 -1.131 2.284 sum -0.628 -16.237 17.059 23.560 Atomic orbital electron populations 1.21788 0.95187 1.01676 1.00930 1.21596 0.96399 0.99522 0.94682 0.91010 1.21544 1.00930 0.95962 0.96425 1.21956 1.01558 0.95484 0.98058 1.22076 1.01716 0.95366 0.82925 1.48138 1.55544 1.10856 1.18800 1.20633 0.77664 0.89722 0.81979 1.90921 1.52492 1.64900 1.35680 1.21883 1.04275 0.92627 0.99591 1.22159 1.05758 0.70638 1.00604 1.48906 1.05632 1.10342 1.45435 1.28650 0.94250 0.89501 0.99271 1.74950 1.09473 1.15127 1.19603 1.78628 0.99188 1.16340 1.16386 1.78805 1.19810 0.92616 1.18326 1.21241 0.98230 0.80006 0.94727 0.90735 1.21986 1.00927 0.92798 0.97217 1.20979 0.95549 0.93927 0.87570 1.42611 1.65612 1.10238 1.20389 1.19699 1.27334 0.88872 1.01762 0.90646 1.25636 1.01493 1.02609 0.97398 1.69855 1.43452 1.37218 1.11624 0.85034 0.77109 0.79665 0.77723 1.18890 1.21964 1.21847 0.92009 0.94971 0.92025 0.90798 0.91078 0.91330 0.88344 0.87592 0.89914 0.85633 0.86413 0.83671 0.87514 0.70255 0.92207 0.91840 0.96122 0.97050 0.79742 0.94027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.21 71.98 0.59 -2.44 16 2 C -0.10 -2.09 2.34 -10.57 -0.02 -2.11 16 3 H 0.07 1.68 6.93 -2.39 -0.02 1.67 16 4 C -0.11 -1.42 5.43 30.62 0.17 -1.25 16 5 C -0.13 -1.15 5.74 30.67 0.18 -0.97 16 6 C 0.10 0.93 6.32 86.36 0.55 1.47 16 7 N -0.60 -10.52 2.40 -794.20 -1.91 -12.42 16 8 C 0.51 9.91 7.61 87.66 0.67 10.58 16 9 O -0.56 -16.34 11.39 -3.03 -0.03 -16.38 16 10 C -0.14 -1.54 4.25 29.85 0.13 -1.41 16 11 C 0.13 1.47 5.77 86.38 0.50 1.97 16 12 N -0.30 -4.29 3.44 -351.82 -1.21 -5.50 16 13 C 0.18 2.22 12.79 180.26 2.31 4.53 16 14 N -0.34 -7.28 12.36 -60.29 -0.74 -8.02 16 15 N -0.11 -2.77 13.43 37.01 0.50 -2.27 16 16 N -0.11 -2.28 13.08 37.02 0.48 -1.80 16 17 C 0.16 3.83 2.72 45.12 0.12 3.96 16 18 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 19 C -0.09 -3.16 2.81 30.59 0.09 -3.07 16 20 C 0.15 6.16 5.81 86.38 0.50 6.66 16 21 N -0.75 -40.59 5.60 -343.46 -1.92 -42.51 16 22 C -0.24 -14.28 9.99 84.03 0.84 -13.44 16 23 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 24 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 25 N -0.97 -61.61 13.06 21.65 0.28 -61.33 16 26 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 27 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 28 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.03 0.93 6.36 -2.38 -0.02 0.91 16 32 H 0.06 1.19 5.97 -2.39 -0.01 1.18 16 33 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.67 6.33 -2.39 -0.02 0.66 16 36 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.11 0.50 5.96 -2.39 -0.01 0.49 16 38 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.13 0.75 7.48 -2.39 -0.02 0.74 16 40 H 0.12 1.17 8.11 -2.39 -0.02 1.15 16 41 H 0.15 1.12 8.04 -2.39 -0.02 1.10 16 42 H 0.11 1.54 8.10 -2.39 -0.02 1.52 16 43 H 0.28 0.23 8.06 -2.91 -0.02 0.21 16 44 H 0.06 2.39 6.37 -2.39 -0.02 2.37 16 45 H 0.06 2.39 5.24 -2.39 -0.01 2.38 16 46 H 0.02 0.86 6.91 -2.39 -0.02 0.84 16 47 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.37 21.86 7.67 -92.71 -0.71 21.15 16 49 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -82.31 381.57 4.80 -77.51 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.26 Total: 23.28 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 7.07 Total: 0.21 kcal Atomic # 7 Polarization: -129.33 SS G_CDS: -4.52 Total: -133.85 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.03 Total: -16.38 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -82.31 4.80 -77.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316680376.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.427 kcal (2) G-P(sol) polarization free energy of solvation -82.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds