Wall clock time and date at job start Tue Mar 31 2020 19:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99947 * 2 1 4 4 H 1.48507 * 109.47078 * 239.99810 * 3 2 1 5 5 H 1.48496 * 109.47320 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47092 * 120.00159 * 3 2 1 7 7 C 1.38808 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99923 * 197.01591 * 7 2 1 9 9 N 1.36931 * 120.00245 * 17.02169 * 7 2 1 10 10 C 1.47080 * 120.88216 * 206.59130 * 9 7 2 11 11 C 1.53243 * 108.51748 * 231.15883 * 10 9 7 12 12 N 1.46900 * 109.33839 * 306.16229 * 11 10 9 13 13 C 1.46903 * 110.99911 * 187.25224 * 12 11 10 14 14 C 1.53005 * 109.46735 * 170.00279 * 13 12 11 15 15 C 1.53005 * 109.46761 * 180.02562 * 14 13 12 16 16 N 1.46502 * 109.47114 * 180.02562 * 15 14 13 17 17 C 1.34770 * 120.00065 * 179.97438 * 16 15 14 18 18 O 1.21281 * 120.00055 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99877 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.46927 * 180.02562 * 19 17 16 21 21 N 1.46500 * 109.46880 * 179.97438 * 20 19 17 22 22 C 1.35313 * 125.86715 * 124.99794 * 21 20 19 23 23 C 1.35346 * 106.17913 * 179.97438 * 22 21 20 24 24 N 1.33775 * 106.49469 * 359.97438 * 23 22 21 25 25 N 1.28639 * 108.88337 * 0.02562 * 24 23 22 26 26 C 1.46902 * 111.26869 * 63.11152 * 12 11 10 27 27 C 1.47084 * 120.88273 * 26.55582 * 9 7 2 28 28 H 0.97002 * 119.99902 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.63429 * 111.44657 * 10 9 7 30 30 H 1.09000 * 109.78661 * 350.95427 * 10 9 7 31 31 H 1.09004 * 109.49286 * 186.20854 * 11 10 9 32 32 H 1.08996 * 109.49783 * 66.12741 * 11 10 9 33 33 H 1.08997 * 109.46850 * 50.00642 * 13 12 11 34 34 H 1.08995 * 109.47825 * 290.00324 * 13 12 11 35 35 H 1.08997 * 109.47156 * 60.00550 * 14 13 12 36 36 H 1.08997 * 109.46973 * 299.99998 * 14 13 12 37 37 H 1.08997 * 109.47231 * 60.00113 * 15 14 13 38 38 H 1.09003 * 109.46785 * 299.99913 * 15 14 13 39 39 H 0.97002 * 119.99235 * 359.97438 * 16 15 14 40 40 H 1.08997 * 109.47043 * 60.00383 * 19 17 16 41 41 H 1.09003 * 109.47347 * 299.99955 * 19 17 16 42 42 H 1.08997 * 109.47231 * 60.00150 * 20 19 17 43 43 H 1.09003 * 109.46785 * 299.99950 * 20 19 17 44 44 H 1.08005 * 126.91380 * 359.97438 * 22 21 20 45 45 H 1.07997 * 126.75671 * 179.97438 * 23 22 21 46 46 H 1.08997 * 109.49615 * 56.84488 * 26 12 11 47 47 H 1.08997 * 109.49547 * 176.93390 * 26 12 11 48 48 H 1.09003 * 109.63016 * 248.55131 * 27 9 7 49 49 H 1.08995 * 109.62276 * 9.13512 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2743 9 7 1.3706 -2.3622 -0.3461 10 6 1.8308 -3.6608 0.1686 11 6 2.0023 -4.6201 -1.0141 12 7 0.7546 -4.6656 -1.7883 13 6 0.8182 -5.7007 -2.8287 14 6 -0.5695 -5.8905 -3.4447 15 6 -0.5034 -6.9691 -4.5279 16 7 -1.8319 -7.1504 -5.1182 17 6 -2.0152 -8.0550 -6.1002 18 8 -1.0803 -8.7186 -6.4957 19 6 -3.3820 -8.2419 -6.7070 20 6 -3.3159 -9.3203 -7.7903 21 7 -4.6447 -9.5024 -8.3798 22 6 -4.9469 -9.4151 -9.6958 23 6 -6.2760 -9.6514 -9.7940 24 7 -6.7160 -9.8694 -8.5496 25 7 -5.7250 -9.7738 -7.7349 26 6 0.4400 -3.3537 -2.3696 27 6 0.2045 -2.3426 -1.2424 28 1 -0.4850 0.8401 -0.0004 29 1 1.0920 -4.0627 0.8619 30 1 2.7849 -3.5375 0.6812 31 1 2.2362 -5.6177 -0.6424 32 1 2.8136 -4.2697 -1.6521 33 1 1.1511 -6.6399 -2.3870 34 1 1.5209 -5.3945 -3.6036 35 1 -0.9024 -4.9513 -3.8865 36 1 -1.2721 -6.1968 -2.6698 37 1 -0.1706 -7.9081 -4.0858 38 1 0.1994 -6.6630 -5.3029 39 1 -2.5796 -6.6193 -4.8021 40 1 -3.7149 -7.3027 -7.1487 41 1 -4.0847 -8.5483 -5.9322 42 1 -2.9831 -10.2594 -7.3483 43 1 -2.6130 -9.0143 -8.5652 44 1 -4.2649 -9.2002 -10.5052 45 1 -6.8654 -9.6619 -10.6988 46 1 1.2731 -3.0208 -2.9885 47 1 -0.4590 -3.4329 -2.9808 48 1 -0.6907 -2.6178 -0.6847 49 1 0.0842 -1.3450 -1.6646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316956451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:35 Heat of formation + Delta-G solvation = 92.528505 kcal Electronic energy + Delta-G solvation = -27776.196088 eV Core-core repulsion = 23776.454626 eV Total energy + Delta-G solvation = -3999.741462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.65587 -40.22537 -38.33660 -36.19619 -35.57533 -34.45558 -32.35298 -31.59453 -31.38237 -30.39632 -29.96288 -27.18429 -25.87387 -24.25480 -23.11635 -22.94644 -22.44911 -21.84872 -21.28377 -20.44143 -19.13131 -18.37824 -17.21864 -16.87839 -16.81977 -16.38887 -16.18392 -15.51648 -15.27934 -15.12524 -14.66940 -14.50638 -14.29613 -13.93674 -13.86720 -13.61813 -13.45728 -13.21839 -13.05914 -12.99284 -12.37471 -12.18986 -11.93884 -11.89510 -11.64701 -11.36844 -11.32021 -11.07355 -10.94574 -10.74533 -10.66152 -10.48000 -10.34717 -10.29824 -10.06640 -9.82049 -9.76268 -9.63230 -9.46048 -8.52966 -7.87550 -6.69227 -5.80609 -3.21607 1.15335 1.78249 2.13334 2.18271 2.78545 3.36349 3.42168 3.43197 3.80141 4.02146 4.10141 4.23849 4.29377 4.48100 4.57860 4.63548 4.78718 4.82308 4.87699 4.97653 5.04369 5.09680 5.30841 5.35572 5.39553 5.42314 5.52423 5.64403 5.73102 5.84500 5.90333 5.94065 6.04989 6.09196 6.12135 6.14078 6.20404 6.31241 6.51262 6.65957 6.90486 7.02580 7.21455 7.55999 7.60559 7.67019 7.71989 7.78998 8.08879 8.41084 9.18982 9.82357 10.40831 11.28264 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022041 B = 0.001531 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.063264 B =18288.001731 C =19056.113570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.148 3.852 11 C 0.045 3.955 12 N -0.533 5.533 13 C 0.059 3.941 14 C -0.129 4.129 15 C 0.120 3.880 16 N -0.723 5.723 17 C 0.520 3.480 18 O -0.544 6.544 19 C -0.157 4.157 20 C 0.132 3.868 21 N -0.292 5.292 22 C -0.048 4.048 23 C -0.053 4.053 24 N -0.272 5.272 25 N -0.085 5.085 26 C 0.033 3.967 27 C 0.178 3.822 28 H 0.254 0.746 29 H 0.025 0.975 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.405 0.595 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.192 0.808 45 H 0.190 0.810 46 H 0.024 0.976 47 H 0.061 0.939 48 H 0.026 0.974 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.792 -18.040 -18.465 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.085 4.085 12 N -0.258 5.258 13 C -0.071 4.071 14 C -0.167 4.167 15 C -0.004 4.004 16 N -0.374 5.374 17 C 0.305 3.695 18 O -0.421 6.421 19 C -0.197 4.197 20 C 0.011 3.989 21 N -0.086 5.086 22 C -0.199 4.199 23 C -0.210 4.210 24 N -0.138 5.138 25 N -0.065 5.065 26 C -0.096 4.096 27 C 0.052 3.948 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.240 0.760 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.134 0.866 44 H 0.209 0.791 45 H 0.207 0.793 46 H 0.042 0.958 47 H 0.080 0.920 48 H 0.044 0.956 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.183 -18.731 -16.987 26.287 hybrid contribution 1.326 1.629 -1.530 2.599 sum -5.856 -17.102 -18.517 25.878 Atomic orbital electron populations 1.70020 1.05200 1.25581 1.54049 1.25015 0.95309 0.98334 1.01031 0.86364 0.78899 0.83371 0.78103 1.21144 1.21604 1.20861 1.19160 0.92586 0.84826 1.41685 0.91693 1.44107 1.34138 1.01249 1.52358 1.20974 0.97799 0.86485 0.92589 1.22615 0.89510 0.99427 0.96905 1.61956 1.34439 1.05827 1.23571 1.21935 0.94989 0.96377 0.93750 1.21810 0.99259 0.98267 0.97372 1.21405 0.83418 0.99624 0.95923 1.46000 1.12862 1.40500 1.38071 1.20148 0.89820 0.79736 0.79751 1.90749 1.43346 1.46336 1.61701 1.21887 0.96945 1.00962 0.99954 1.21840 0.77624 1.01686 0.97796 1.47563 1.09992 1.44888 1.06132 1.23764 0.98939 1.09489 0.87686 1.23671 0.93114 1.06608 0.97646 1.75151 1.21400 1.16791 1.00408 1.78313 0.88342 1.18182 1.21702 1.22957 0.98623 0.89426 0.98623 1.20864 0.88963 0.96558 0.88438 0.93572 0.95677 0.92620 0.92015 0.95435 0.91165 0.95331 0.90934 0.90258 0.91164 0.91379 0.76030 0.87782 0.86758 0.87168 0.86588 0.79147 0.79280 0.95780 0.92029 0.95611 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.98 11.15 55.49 0.62 -25.36 16 2 C 0.00 0.04 4.94 -17.43 -0.09 -0.04 16 3 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.92 9.63 -15.06 -0.15 -7.07 16 8 H 0.07 1.74 7.88 -52.48 -0.41 1.33 16 9 N -0.60 -14.92 3.04 -172.01 -0.52 -15.45 16 10 C 0.15 3.11 6.69 -3.60 -0.02 3.09 16 11 C 0.04 0.78 5.62 -3.70 -0.02 0.76 16 12 N -0.53 -8.93 4.63 -234.31 -1.08 -10.01 16 13 C 0.06 0.74 4.96 -3.82 -0.02 0.72 16 14 C -0.13 -1.31 5.26 -26.73 -0.14 -1.45 16 15 C 0.12 1.07 5.67 -4.04 -0.02 1.05 16 16 N -0.72 -5.34 5.56 -60.29 -0.33 -5.67 16 17 C 0.52 4.13 7.83 -10.99 -0.09 4.05 16 18 O -0.54 -6.19 15.98 5.56 0.09 -6.10 16 19 C -0.16 -0.82 5.83 -27.88 -0.16 -0.98 16 20 C 0.13 0.69 5.74 -4.04 -0.02 0.67 16 21 N -0.29 -2.07 3.44 -61.26 -0.21 -2.29 16 22 C -0.05 -0.26 11.57 -17.05 -0.20 -0.46 16 23 C -0.05 -0.37 12.05 -17.74 -0.21 -0.58 16 24 N -0.27 -2.91 12.41 30.23 0.38 -2.54 16 25 N -0.09 -0.88 12.91 60.35 0.78 -0.10 16 26 C 0.03 0.61 5.46 -3.70 -0.02 0.59 16 27 C 0.18 4.20 5.42 -3.60 -0.02 4.18 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 31 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.82 7.97 -51.93 -0.41 0.40 16 34 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 35 H 0.07 0.76 6.40 -51.93 -0.33 0.43 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.41 2.16 8.47 -40.82 -0.35 1.81 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.11 0.59 8.12 -51.93 -0.42 0.17 16 42 H 0.11 0.62 8.10 -51.93 -0.42 0.20 16 43 H 0.12 0.43 8.03 -51.93 -0.42 0.02 16 44 H 0.19 0.28 8.06 -52.48 -0.42 -0.14 16 45 H 0.19 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 1.00 6.16 -51.93 -0.32 0.68 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 2.30 6.12 -51.93 -0.32 1.98 16 LS Contribution 397.58 15.07 5.99 5.99 Total: -1.00 -34.70 397.58 -8.52 -43.23 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -8.02 Total: -2.70 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -1.18 Total: 4.53 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.38 Total: -61.41 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: 0.09 Total: -6.10 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.70 -8.52 -43.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316956451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.754 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds