Wall clock time and date at job start Tue Mar 31 2020 19:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99947 * 2 1 4 4 H 1.48507 * 109.47078 * 239.99810 * 3 2 1 5 5 H 1.48496 * 109.47320 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47092 * 120.00159 * 3 2 1 7 7 C 1.38808 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99923 * 197.01591 * 7 2 1 9 9 N 1.36931 * 120.00245 * 17.02169 * 7 2 1 10 10 C 1.47080 * 120.88216 * 206.59130 * 9 7 2 11 11 C 1.53243 * 108.51748 * 231.15883 * 10 9 7 12 12 N 1.46900 * 109.33839 * 306.16229 * 11 10 9 13 13 C 1.46903 * 110.99911 * 187.25224 * 12 11 10 14 14 C 1.53005 * 109.46735 * 170.00279 * 13 12 11 15 15 C 1.53005 * 109.46761 * 180.02562 * 14 13 12 16 16 N 1.46502 * 109.47114 * 180.02562 * 15 14 13 17 17 C 1.34770 * 120.00065 * 179.97438 * 16 15 14 18 18 O 1.21281 * 120.00055 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99877 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.46927 * 180.02562 * 19 17 16 21 21 N 1.46500 * 109.46880 * 179.97438 * 20 19 17 22 22 C 1.35313 * 125.86715 * 124.99794 * 21 20 19 23 23 C 1.35346 * 106.17913 * 179.97438 * 22 21 20 24 24 N 1.33775 * 106.49469 * 359.97438 * 23 22 21 25 25 N 1.28639 * 108.88337 * 0.02562 * 24 23 22 26 26 C 1.46902 * 111.26869 * 63.11152 * 12 11 10 27 27 C 1.47084 * 120.88273 * 26.55582 * 9 7 2 28 28 H 0.97002 * 119.99902 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.63429 * 111.44657 * 10 9 7 30 30 H 1.09000 * 109.78661 * 350.95427 * 10 9 7 31 31 H 1.09004 * 109.49286 * 186.20854 * 11 10 9 32 32 H 1.08996 * 109.49783 * 66.12741 * 11 10 9 33 33 H 1.08997 * 109.46850 * 50.00642 * 13 12 11 34 34 H 1.08995 * 109.47825 * 290.00324 * 13 12 11 35 35 H 1.08997 * 109.47156 * 60.00550 * 14 13 12 36 36 H 1.08997 * 109.46973 * 299.99998 * 14 13 12 37 37 H 1.08997 * 109.47231 * 60.00113 * 15 14 13 38 38 H 1.09003 * 109.46785 * 299.99913 * 15 14 13 39 39 H 0.97002 * 119.99235 * 359.97438 * 16 15 14 40 40 H 1.08997 * 109.47043 * 60.00383 * 19 17 16 41 41 H 1.09003 * 109.47347 * 299.99955 * 19 17 16 42 42 H 1.08997 * 109.47231 * 60.00150 * 20 19 17 43 43 H 1.09003 * 109.46785 * 299.99950 * 20 19 17 44 44 H 1.08005 * 126.91380 * 359.97438 * 22 21 20 45 45 H 1.07997 * 126.75671 * 179.97438 * 23 22 21 46 46 H 1.08997 * 109.49615 * 56.84488 * 26 12 11 47 47 H 1.08997 * 109.49547 * 176.93390 * 26 12 11 48 48 H 1.09003 * 109.63016 * 248.55131 * 27 9 7 49 49 H 1.08995 * 109.62276 * 9.13512 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2743 9 7 1.3706 -2.3622 -0.3461 10 6 1.8308 -3.6608 0.1686 11 6 2.0023 -4.6201 -1.0141 12 7 0.7546 -4.6656 -1.7883 13 6 0.8182 -5.7007 -2.8287 14 6 -0.5695 -5.8905 -3.4447 15 6 -0.5034 -6.9691 -4.5279 16 7 -1.8319 -7.1504 -5.1182 17 6 -2.0152 -8.0550 -6.1002 18 8 -1.0803 -8.7186 -6.4957 19 6 -3.3820 -8.2419 -6.7070 20 6 -3.3159 -9.3203 -7.7903 21 7 -4.6447 -9.5024 -8.3798 22 6 -4.9469 -9.4151 -9.6958 23 6 -6.2760 -9.6514 -9.7940 24 7 -6.7160 -9.8694 -8.5496 25 7 -5.7250 -9.7738 -7.7349 26 6 0.4400 -3.3537 -2.3696 27 6 0.2045 -2.3426 -1.2424 28 1 -0.4850 0.8401 -0.0004 29 1 1.0920 -4.0627 0.8619 30 1 2.7849 -3.5375 0.6812 31 1 2.2362 -5.6177 -0.6424 32 1 2.8136 -4.2697 -1.6521 33 1 1.1511 -6.6399 -2.3870 34 1 1.5209 -5.3945 -3.6036 35 1 -0.9024 -4.9513 -3.8865 36 1 -1.2721 -6.1968 -2.6698 37 1 -0.1706 -7.9081 -4.0858 38 1 0.1994 -6.6630 -5.3029 39 1 -2.5796 -6.6193 -4.8021 40 1 -3.7149 -7.3027 -7.1487 41 1 -4.0847 -8.5483 -5.9322 42 1 -2.9831 -10.2594 -7.3483 43 1 -2.6130 -9.0143 -8.5652 44 1 -4.2649 -9.2002 -10.5052 45 1 -6.8654 -9.6619 -10.6988 46 1 1.2731 -3.0208 -2.9885 47 1 -0.4590 -3.4329 -2.9808 48 1 -0.6907 -2.6178 -0.6847 49 1 0.0842 -1.3450 -1.6646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316956451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:33 Heat of formation + Delta-G solvation = 66.533725 kcal Electronic energy + Delta-G solvation = -27777.323306 eV Core-core repulsion = 23776.454626 eV Total energy + Delta-G solvation = -4000.868681 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -44.17862 -40.88719 -39.77108 -37.15376 -36.25814 -35.79205 -33.70612 -32.52388 -31.94676 -31.63366 -31.50139 -28.57245 -26.80623 -25.48447 -24.43254 -23.98745 -23.57634 -22.41185 -22.21501 -21.18236 -20.80239 -18.87332 -18.73860 -17.76048 -17.41078 -17.17473 -17.03961 -16.69959 -16.28875 -16.03229 -15.78443 -15.59183 -15.33810 -15.23541 -15.17848 -14.85223 -14.71450 -14.37113 -14.17227 -13.67379 -13.36866 -13.32590 -12.94137 -12.82956 -12.78565 -12.60354 -12.53435 -12.43976 -12.32535 -12.08842 -11.95364 -11.85654 -11.76846 -11.49057 -11.34123 -11.21965 -10.97337 -10.58325 -10.32022 -10.14055 -9.25697 -8.67989 -7.88194 -5.32562 0.66625 1.33640 1.46398 1.48275 1.52124 1.55361 1.64764 2.19279 2.50420 3.01665 3.27166 3.39202 3.61575 3.68454 3.69558 3.82345 3.95910 4.06660 4.18310 4.24237 4.27754 4.35042 4.35227 4.38781 4.46730 4.50052 4.62452 4.64697 4.65446 4.68302 4.70562 4.81619 4.88187 4.89846 5.03886 5.16036 5.21810 5.26265 5.29738 5.38045 5.40783 5.60469 5.65094 5.69084 6.19147 6.29958 6.37347 6.45274 7.13011 7.13287 7.53516 7.84145 8.37943 9.18379 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022041 B = 0.001531 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.063264 B =18288.001731 C =19056.113570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.615 5.615 10 C 0.142 3.858 11 C 0.055 3.945 12 N -0.542 5.542 13 C 0.059 3.941 14 C -0.117 4.117 15 C 0.129 3.871 16 N -0.718 5.718 17 C 0.523 3.477 18 O -0.579 6.579 19 C -0.145 4.145 20 C 0.131 3.869 21 N -0.290 5.290 22 C -0.033 4.033 23 C -0.066 4.066 24 N -0.314 5.314 25 N -0.125 5.125 26 C 0.051 3.949 27 C 0.184 3.816 28 H 0.251 0.749 29 H 0.016 0.984 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.022 0.978 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.416 0.584 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.104 0.896 43 H 0.136 0.864 44 H 0.233 0.767 45 H 0.216 0.784 46 H 0.015 0.985 47 H 0.087 0.913 48 H -0.001 1.001 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.010 -18.851 -20.257 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.397 4.397 8 H 0.084 0.916 9 N -0.339 5.339 10 C 0.017 3.983 11 C -0.074 4.074 12 N -0.266 5.266 13 C -0.069 4.069 14 C -0.155 4.155 15 C 0.005 3.995 16 N -0.370 5.370 17 C 0.310 3.690 18 O -0.459 6.459 19 C -0.186 4.186 20 C 0.010 3.990 21 N -0.084 5.084 22 C -0.185 4.185 23 C -0.224 4.224 24 N -0.180 5.180 25 N -0.104 5.104 26 C -0.079 4.079 27 C 0.058 3.942 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.040 0.960 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.253 0.747 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.122 0.878 43 H 0.154 0.846 44 H 0.250 0.750 45 H 0.233 0.767 46 H 0.033 0.967 47 H 0.105 0.895 48 H 0.017 0.983 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.408 -19.566 -18.755 27.850 hybrid contribution 1.107 1.824 -0.973 2.345 sum -5.301 -17.742 -19.727 27.057 Atomic orbital electron populations 1.70179 1.06594 1.25939 1.55365 1.25774 0.96084 1.01416 1.01271 0.85334 0.77566 0.79206 0.78290 1.20524 1.21896 1.20130 1.19505 0.92906 0.86101 1.41193 0.91606 1.44403 1.34297 1.02112 1.53108 1.21136 0.97412 0.85614 0.94173 1.22456 0.89619 0.99928 0.95420 1.61899 1.34202 1.05504 1.25039 1.22028 0.96613 0.95433 0.92830 1.21660 0.97745 0.98554 0.97522 1.21199 0.84094 0.98916 0.95336 1.45946 1.12739 1.40489 1.37811 1.20501 0.90291 0.78952 0.79300 1.90736 1.44687 1.47647 1.62831 1.21791 0.95064 1.01762 0.99937 1.21957 0.77122 1.01458 0.98473 1.47721 1.09796 1.44043 1.06810 1.24453 0.99061 1.07158 0.87782 1.24258 0.94313 1.06397 0.97428 1.75087 1.22517 1.18213 1.02145 1.78255 0.89232 1.20375 1.22548 1.22615 0.99477 0.89312 0.96460 1.20645 0.87776 0.96442 0.89339 0.94035 0.96602 0.92292 0.88676 0.95980 0.89463 0.95071 0.91138 0.90173 0.91443 0.91927 0.74723 0.86195 0.86710 0.87811 0.84583 0.75037 0.76734 0.96678 0.89509 0.98301 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 11.15 21.65 0.24 -54.95 16 2 C -0.05 -2.80 4.94 84.86 0.42 -2.38 16 3 Si 0.97 44.67 29.59 68.60 2.03 46.69 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.27 -14.80 9.63 84.03 0.81 -13.99 16 8 H 0.07 3.55 7.88 -2.91 -0.02 3.52 16 9 N -0.61 -31.29 3.04 -698.12 -2.12 -33.41 16 10 C 0.14 5.93 6.69 86.35 0.58 6.51 16 11 C 0.05 1.81 5.62 86.38 0.49 2.30 16 12 N -0.54 -17.14 4.63 -895.23 -4.15 -21.29 16 13 C 0.06 1.33 4.96 86.30 0.43 1.76 16 14 C -0.12 -2.08 5.26 30.60 0.16 -1.92 16 15 C 0.13 2.02 5.67 86.38 0.49 2.51 16 16 N -0.72 -9.13 5.56 -463.05 -2.57 -11.70 16 17 C 0.52 7.38 7.83 87.66 0.69 8.06 16 18 O -0.58 -12.34 15.98 -3.03 -0.05 -12.39 16 19 C -0.15 -1.25 5.83 29.85 0.17 -1.08 16 20 C 0.13 1.14 5.74 86.38 0.50 1.64 16 21 N -0.29 -3.67 3.44 -347.72 -1.20 -4.86 16 22 C -0.03 -0.28 11.57 83.49 0.97 0.69 16 23 C -0.07 -0.82 12.05 83.73 1.01 0.19 16 24 N -0.31 -6.69 12.41 -58.26 -0.72 -7.41 16 25 N -0.12 -2.52 12.91 37.02 0.48 -2.04 16 26 C 0.05 1.84 5.46 86.38 0.47 2.32 16 27 C 0.18 8.88 5.42 86.35 0.47 9.35 16 28 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 2.36 7.96 -2.39 -0.02 2.34 16 31 H 0.10 2.52 7.99 -2.38 -0.02 2.50 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 1.72 7.97 -2.39 -0.02 1.70 16 34 H 0.03 0.71 8.12 -2.39 -0.02 0.70 16 35 H 0.07 1.31 6.40 -2.39 -0.02 1.29 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.42 3.50 8.47 -92.71 -0.79 2.72 16 40 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.11 1.04 8.12 -2.39 -0.02 1.02 16 42 H 0.10 1.07 8.10 -2.39 -0.02 1.05 16 43 H 0.14 0.65 8.03 -2.39 -0.02 0.63 16 44 H 0.23 -0.29 8.06 -2.91 -0.02 -0.32 16 45 H 0.22 1.14 8.06 -2.91 -0.02 1.12 16 46 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.09 2.70 6.16 -2.39 -0.01 2.69 16 48 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 49 H 0.06 3.01 6.12 -2.39 -0.01 3.00 16 Total: -1.00 -77.68 397.58 -0.25 -77.93 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.16 Total: 7.45 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 7.64 Total: 15.97 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -10.04 Total: -135.67 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.05 Total: -12.39 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -77.68 -0.25 -77.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316956451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.469 kcal (2) G-P(sol) polarization free energy of solvation -77.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds