Wall clock time and date at job start Tue Mar 31 2020 20:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47101 * 2 1 4 4 C 1.52999 * 109.47057 * 239.99901 * 2 1 3 5 5 N 1.46494 * 109.47251 * 120.00010 * 2 1 3 6 6 N 1.28722 * 125.32019 * 359.97438 * 5 2 1 7 7 N 1.28978 * 108.99251 * 179.97438 * 6 5 2 8 8 C 1.34188 * 107.25210 * 359.97438 * 7 6 5 9 9 C 1.48001 * 126.70253 * 179.97438 * 8 7 6 10 10 O 1.21543 * 120.00033 * 180.02562 * 9 8 7 11 11 N 1.34773 * 119.99984 * 0.29870 * 9 8 7 12 12 C 1.46505 * 120.00095 * 179.72370 * 11 9 8 13 13 C 1.53005 * 109.46904 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46696 * 180.02562 * 13 12 11 15 15 H 1.08995 * 110.63921 * 305.69830 * 14 13 12 16 16 C 1.55159 * 110.71790 * 182.55535 * 14 13 12 17 17 C 1.54909 * 101.58328 * 206.13630 * 16 14 13 18 18 N 1.47423 * 104.82974 * 37.00760 * 17 16 14 19 19 C 1.36936 * 125.64541 * 155.90948 * 18 17 16 20 20 H 1.08006 * 119.99963 * 179.97438 * 19 18 17 21 21 C 1.38815 * 120.00210 * 359.97438 * 19 18 17 22 22 N 1.31622 * 119.99617 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99985 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47359 * 60.00329 * 23 21 19 25 25 H 1.48506 * 109.47038 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47307 * 299.99698 * 23 21 19 27 27 C 1.47321 * 108.74023 * 335.71516 * 18 17 16 28 28 N 1.28864 * 125.32383 * 180.26435 * 5 2 1 29 29 H 1.09001 * 109.46933 * 299.99949 * 1 2 3 30 30 H 1.09000 * 109.46944 * 59.99908 * 1 2 3 31 31 H 1.09000 * 109.46997 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47149 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47297 * 299.99877 * 3 2 1 34 34 H 1.08998 * 109.47405 * 59.99723 * 3 2 1 35 35 H 1.09000 * 109.47460 * 300.00014 * 4 2 1 36 36 H 1.09000 * 109.47087 * 60.00278 * 4 2 1 37 37 H 1.09001 * 109.47127 * 179.97438 * 4 2 1 38 38 H 0.97000 * 120.00112 * 359.72805 * 11 9 8 39 39 H 1.09003 * 109.46699 * 299.99996 * 12 11 9 40 40 H 1.08993 * 109.47199 * 60.00009 * 12 11 9 41 41 H 1.09003 * 109.46508 * 299.99548 * 13 12 11 42 42 H 1.08993 * 109.47679 * 59.99698 * 13 12 11 43 43 H 1.09006 * 111.00075 * 324.20952 * 16 14 13 44 44 H 1.08999 * 111.00291 * 88.01843 * 16 14 13 45 45 H 1.08995 * 110.37024 * 155.84655 * 17 16 14 46 46 H 1.09007 * 110.36233 * 278.06274 * 17 16 14 47 47 H 0.97002 * 119.99397 * 179.97438 * 22 21 19 48 48 H 1.08994 * 110.06781 * 241.87028 * 27 18 17 49 49 H 1.08999 * 109.84531 * 120.60895 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1961 6 7 1.2763 -1.2160 2.1072 7 7 2.0307 -1.7397 3.0128 8 6 3.3029 -1.5276 2.6423 9 6 4.5190 -1.9500 3.3725 10 8 5.6183 -1.6916 2.9231 11 7 4.4074 -2.6261 4.5331 12 6 5.6111 -3.0495 5.2528 13 6 5.2079 -3.7923 6.5283 14 6 6.4650 -4.2340 7.2802 15 1 7.1182 -4.8147 6.6289 16 6 6.0896 -5.0469 8.5474 17 6 7.3202 -4.7958 9.4540 18 7 7.7020 -3.3960 9.1928 19 6 8.3992 -2.5860 10.0488 20 1 8.6311 -1.5705 9.7630 21 6 8.8081 -3.0698 11.2840 22 7 8.5251 -4.3071 11.6326 23 14 9.7586 -1.9645 12.4520 24 1 8.9358 -0.7747 12.7874 25 1 10.0759 -2.7137 13.6944 26 1 11.0204 -1.5268 11.8027 27 6 7.2136 -3.0137 7.8565 28 7 3.2580 -0.8624 1.5034 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 3.5301 -2.8324 4.8918 39 1 6.2000 -3.7116 4.6179 40 1 6.2050 -2.1739 5.5143 41 1 4.6188 -3.1305 7.1632 42 1 4.6141 -4.6681 6.2665 43 1 5.1805 -4.6578 9.0060 44 1 5.9845 -6.1066 8.3148 45 1 7.0521 -4.9265 10.5024 46 1 8.1338 -5.4693 9.1843 47 1 8.8111 -4.6453 12.4956 48 1 8.0531 -2.7551 7.2113 49 1 6.5327 -2.1666 7.9398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317790643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:07 Heat of formation + Delta-G solvation = 109.162737 kcal Electronic energy + Delta-G solvation = -28368.913925 eV Core-core repulsion = 24369.893777 eV Total energy + Delta-G solvation = -3999.020148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.77337 -39.79607 -38.15337 -37.75453 -35.36191 -33.87935 -33.18881 -32.68686 -30.80584 -28.99796 -28.30276 -28.23461 -26.97177 -25.48241 -24.86243 -24.31810 -22.27896 -21.37124 -20.93722 -20.04935 -19.39405 -18.21277 -17.75902 -17.14215 -16.84887 -16.08329 -15.76709 -15.09238 -14.92490 -14.73261 -14.57585 -14.44540 -14.19747 -13.64162 -13.63279 -13.55127 -13.17293 -13.04847 -12.59593 -12.52729 -12.49251 -12.25439 -12.20422 -11.92374 -11.82529 -11.68473 -11.54120 -11.40359 -11.34661 -11.04897 -10.87345 -10.71690 -10.70034 -10.57753 -10.13165 -9.98344 -9.88355 -9.70590 -9.42426 -9.23316 -8.58922 -6.76331 -5.59318 -3.00459 0.69635 1.16759 1.27209 2.59720 2.89673 3.44569 3.48419 3.49894 3.51656 3.74190 3.82811 3.94056 4.25168 4.54353 4.72908 4.75512 4.76431 4.89135 4.92388 4.96301 4.97540 4.97836 5.12321 5.21351 5.31653 5.34095 5.40964 5.51696 5.52878 5.61915 5.66145 5.73571 5.78599 5.89324 6.04915 6.13551 6.25422 6.33450 6.44106 6.66011 6.68988 6.82150 7.03229 7.17999 7.58727 7.68731 7.78308 7.92018 7.93482 8.42971 9.28660 9.89598 10.55249 11.44476 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026195 B = 0.001736 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.652406 B =16128.420047 C =16550.207667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.161 4.161 5 N -0.125 5.125 6 N -0.055 5.055 7 N -0.257 5.257 8 C 0.127 3.873 9 C 0.614 3.386 10 O -0.508 6.508 11 N -0.703 5.703 12 C 0.118 3.882 13 C -0.117 4.117 14 C -0.097 4.097 15 H 0.073 0.927 16 C -0.138 4.138 17 C 0.151 3.849 18 N -0.605 5.605 19 C -0.220 4.220 20 H 0.076 0.924 21 C -0.014 4.014 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.138 3.862 28 N -0.245 5.245 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.410 0.590 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.105 0.895 46 H 0.010 0.990 47 H 0.252 0.748 48 H 0.020 0.980 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.191 6.326 -26.606 33.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 C -0.220 4.220 4 C -0.219 4.219 5 N -0.040 5.040 6 N -0.047 5.047 7 N -0.132 5.132 8 C -0.157 4.157 9 C 0.393 3.607 10 O -0.379 6.379 11 N -0.355 5.355 12 C -0.004 4.004 13 C -0.156 4.156 14 C -0.117 4.117 15 H 0.091 0.909 16 C -0.177 4.177 17 C 0.026 3.974 18 N -0.331 5.331 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.209 4.209 22 N -0.572 5.572 23 Si 0.745 3.255 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.213 1.213 27 C 0.012 3.988 28 N -0.098 5.098 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.246 0.754 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.123 0.877 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.038 0.962 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -18.865 6.589 -26.837 33.459 hybrid contribution 0.581 0.420 0.791 1.067 sum -18.285 7.009 -26.046 32.586 Atomic orbital electron populations 1.22118 0.89700 1.04782 1.04547 1.21552 0.96675 0.92922 0.79295 1.22271 1.03612 0.91773 1.04301 1.22268 1.03587 1.01128 0.94923 1.50771 1.00916 1.34185 1.18087 1.78878 1.21576 1.08842 0.95451 1.76137 1.00080 1.17604 1.19333 1.25366 0.94579 1.02180 0.93542 1.16104 0.84606 0.79040 0.80975 1.90875 1.25257 1.54833 1.66939 1.45794 1.11753 1.55980 1.21998 1.21677 0.85790 1.00064 0.92892 1.21816 0.98956 0.99948 0.94843 1.22095 0.95076 0.97977 0.96533 0.90876 1.23040 1.00856 0.97847 0.95959 1.21915 0.90661 0.84522 1.00262 1.44582 1.64886 1.10475 1.13204 1.19052 1.26548 0.94030 0.95266 0.90613 1.24784 1.01485 0.96636 0.97963 1.69799 1.51233 1.14416 1.21790 0.86155 0.79707 0.79359 0.80297 1.21215 1.21604 1.21272 1.21439 0.95226 0.94277 0.87844 1.74995 1.02699 1.16852 1.15240 0.90428 0.88997 0.90454 0.90141 0.88861 0.91206 0.91244 0.88862 0.90163 0.75405 0.90801 0.90291 0.90875 0.91317 0.92142 0.92465 0.87700 0.97184 0.93779 0.96159 0.95839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 7.90 37.16 0.29 -0.21 16 2 C 0.18 0.93 1.30 -131.82 -0.17 0.76 16 3 C -0.16 -0.68 8.66 37.15 0.32 -0.35 16 4 C -0.16 -0.64 8.66 37.16 0.32 -0.32 16 5 N -0.12 -1.20 3.72 0.52 0.00 -1.19 16 6 N -0.05 -0.60 12.21 60.35 0.74 0.14 16 7 N -0.26 -3.16 12.26 32.10 0.39 -2.76 16 8 C 0.13 1.67 8.14 -156.24 -1.27 0.40 16 9 C 0.61 8.63 7.84 -12.26 -0.10 8.53 16 10 O -0.51 -8.72 17.10 5.33 0.09 -8.63 16 11 N -0.70 -8.41 5.55 -61.19 -0.34 -8.75 16 12 C 0.12 1.51 5.54 -4.04 -0.02 1.49 16 13 C -0.12 -1.51 4.72 -26.73 -0.13 -1.63 16 14 C -0.10 -1.63 2.95 -88.78 -0.26 -1.89 16 15 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 16 C -0.14 -2.57 6.54 -24.58 -0.16 -2.73 16 17 C 0.15 3.72 5.89 -2.53 -0.01 3.70 16 18 N -0.61 -15.83 3.40 -169.83 -0.58 -16.41 16 19 C -0.22 -6.29 10.28 -15.06 -0.15 -6.45 16 20 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 21 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 22 N -0.92 -27.34 10.09 55.49 0.56 -26.78 16 23 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.14 2.90 6.13 -2.90 -0.02 2.88 16 28 N -0.24 -3.00 11.85 32.11 0.38 -2.62 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.41 4.12 8.22 -40.82 -0.34 3.79 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 41 H 0.07 0.96 8.00 -51.93 -0.42 0.54 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.10 8.05 -51.93 -0.42 0.69 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 46 H 0.01 0.27 8.14 -51.92 -0.42 -0.16 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -34.68 400.79 -7.35 -42.03 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -8.16 Total: -2.22 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.46 Total: 3.68 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 1.16 Total: -58.38 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.68 -7.35 -42.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317790643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.194 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds